-
1
-
-
33750214531
-
The discovery of endogenous retroviruses
-
Weiss RA. 2006. The discovery of endogenous retroviruses. Retrovirology 3:67.
-
(2006)
Retrovirology
, vol.3
, pp. 67
-
-
Weiss, R.A.1
-
2
-
-
84861188188
-
Studies of endogenous retroviruses reveal a continuing evolutionary saga
-
Stoye JP. 2012. Studies of endogenous retroviruses reveal a continuing evolutionary saga. Nat. Rev. Microbiol. 10:395-406.
-
(2012)
Nat. Rev. Microbiol
, vol.10
, pp. 395-406
-
-
Stoye, J.P.1
-
3
-
-
0031887360
-
The origin and early evolution of birds
-
Padian K, Chiappe LM. 1998. The origin and early evolution of birds. Biol. Rev. 73:42.
-
(1998)
Biol. Rev
, vol.73
, pp. 42
-
-
Padian, K.1
Chiappe, L.M.2
-
4
-
-
79960900031
-
An archaeopteryx-like theropod from China and the origin of Avialae
-
Xu X, You H, Du K, Han F. 2011. An archaeopteryx-like theropod from China and the origin of Avialae. Nature 475:465-470.
-
(2011)
Nature
, vol.475
, pp. 465-470
-
-
Xu, X.1
You, H.2
Du, K.3
Han, F.4
-
5
-
-
0029145558
-
Reticuloendotheliosis viruses and derived vectors
-
Dornburg R. 1995. Reticuloendotheliosis viruses and derived vectors. Gene Ther. 2:301-310.
-
(1995)
Gene Ther
, vol.2
, pp. 301-310
-
-
Dornburg, R.1
-
6
-
-
55549093726
-
Biology and evolution of the endogenous koala retrovirus
-
Tarlinton R, Meers J, Young P. 2008. Biology and evolution of the endogenous koala retrovirus. Cell. Mol. Life Sci. 65:3413-3421.
-
(2008)
Cell. Mol. Life Sci
, vol.65
, pp. 3413-3421
-
-
Tarlinton, R.1
Meers, J.2
Young, P.3
-
7
-
-
84863664324
-
Phylogeny-directed search for murine leukemia virus-like retroviruses in vertebrate genomes and in patients suffering from myalgic encephalomyelitis/chronic fatigue syndrome and prostate cancer
-
Blomberg J, et al. 2011. Phylogeny-directed search for murine leukemia virus-like retroviruses in vertebrate genomes and in patients suffering from myalgic encephalomyelitis/chronic fatigue syndrome and prostate cancer. Adv. Virol. 2011:341294.
-
(2011)
Adv. Virol
, pp. 341294
-
-
Blomberg, J.1
-
8
-
-
0002075936
-
Retrotransponsons, endogenous retroviruses and the evolution of retroelements
-
In Coffin JM, Hughes SH, Varmus HE, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Boeke JD, Stoye JP. 1997. Retrotransponsons, endogenous retroviruses and the evolution of retroelements, p 343-435. In Coffin JM, Hughes SH, Varmus HE (ed), Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1997)
Retroviruses
, pp. 343-435
-
-
Boeke, J.D.1
Stoye, J.P.2
-
9
-
-
0026668650
-
Endogenous retroviral sequences are required for tissue-specific expression of human salivary amylase gene
-
Ting C-N, Rosenberg MP, Snow CM, Samuelson LC, Meisler MH. 1992. Endogenous retroviral sequences are required for tissue-specific expression of human salivary amylase gene. Genes Dev. 6:1457-1465.
-
(1992)
Genes Dev
, vol.6
, pp. 1457-1465
-
-
Ting, C.-N.1
Rosenberg, M.P.2
Snow, C.M.3
Samuelson, L.C.4
Meisler, M.H.5
-
10
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
International Chicken Genome Sequencing Consortium
-
International Chicken Genome Sequencing Consortium. 2004. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432:695-777.
-
(2004)
Nature
, vol.432
, pp. 695-777
-
-
-
11
-
-
77957903598
-
Multi-platform next-generation sequencing of the domestic turkey (Melearis gallopavo): Genome assembly and analysis
-
Dalloul RA, et al. 2010. Multi-platform next-generation sequencing of the domestic turkey (Melearis gallopavo): genome assembly and analysis. PLoS Biol. 8:e1000475.
-
(2010)
PLoS Biol
, vol.8
-
-
Dalloul, R.A.1
-
12
-
-
77950376512
-
The genome of a songbird
-
Warren WC, et al. 2010. The genome of a songbird. Nature 464:757-762.
-
(2010)
Nature
, vol.464
, pp. 757-762
-
-
Warren, W.C.1
-
13
-
-
0035143484
-
Calibration of avian molecular clocks
-
van Tuinen M, Hedges SB. 2001. Calibration of avian molecular clocks. Mol. Biol. Evol. 18:206-213.
-
(2001)
Mol. Biol. Evol
, vol.18
, pp. 206-213
-
-
van Tuinen, M.1
Hedges, S.B.2
-
14
-
-
0347093513
-
Calibration of galliform molecular clocks using multiple fossils and genetic partitions
-
van Tuinen M, Dyke GJ. 2004. Calibration of galliform molecular clocks using multiple fossils and genetic partitions. Mol. Phylogenet. Evol. 30: 74-86.
-
(2004)
Mol. Phylogenet. Evol
, vol.30
, pp. 74-86
-
-
van Tuinen, M.1
Dyke, G.J.2
-
15
-
-
37549035420
-
Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes
-
Kriegs JO, et al. 2007. Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes). BMC Evol. Biol. 7:190.
-
(2007)
BMC Evol. Biol
, vol.7
, pp. 190
-
-
Kriegs, J.O.1
-
16
-
-
81455129577
-
A revised nomenclature for transcribed human endogenous retroviral loci
-
Mayer J, Blomberg J, Seal RL. 2011. A revised nomenclature for transcribed human endogenous retroviral loci. Mob. DNA 2:7.
-
(2011)
Mob. DNA
, vol.2
, pp. 7
-
-
Mayer, J.1
Blomberg, J.2
Seal, R.L.3
-
17
-
-
70350223641
-
Classification and nomenclature of endogenous retroviral sequences (ERVs): Problems and recommendations
-
Blomberg J, Benachenhou F, Blikstad V, Sperber G, Mayer J. 2009. Classification and nomenclature of endogenous retroviral sequences (ERVs): problems and recommendations. Gene 448:115-123.
-
(2009)
Gene
, vol.448
, pp. 115-123
-
-
Blomberg, J.1
Benachenhou, F.2
Blikstad, V.3
Sperber, G.4
Mayer, J.5
-
18
-
-
4344614228
-
Complete nucleotide sequences of ALV-related endogenous retroviruses available from the draft chicken genome sequence
-
Borisenko L, Rynditch AV. 2004. Complete nucleotide sequences of ALV-related endogenous retroviruses available from the draft chicken genome sequence. Folia Biol. (Praha) 50:136-141.
-
(2004)
Folia Biol. (Praha)
, vol.50
, pp. 136-141
-
-
Borisenko, L.1
Rynditch, A.V.2
-
19
-
-
34548590461
-
Automated recognition of retroviral sequences in genomic data-RetroTector
-
Sperber GO, Airola T, Jern P, Blomberg J. 2007. Automated recognition of retroviral sequences in genomic data-RetroTector. Nucleic Acids Res. 35:4964-4976.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 4964-4976
-
-
Sperber, G.O.1
Airola, T.2
Jern, P.3
Blomberg, J.4
-
21
-
-
0018664046
-
Ten genetic loci in the chicken that contain structural genes for endogenous avian leukosis viruses
-
Astrin SM, et al. 1980. Ten genetic loci in the chicken that contain structural genes for endogenous avian leukosis viruses. Cold Spring Harb. Symp. Quant. Biol. 44:1105-1109.
-
(1980)
Cold Spring Harb. Symp. Quant. Biol
, vol.44
, pp. 1105-1109
-
-
Astrin, S.M.1
-
22
-
-
43749091058
-
Molecular characterization of full-length MLV-related endogenous retrovirus ChiRV1 from the chicken, Gallus gallus
-
Borysenko L, Stepanets V, Rynditch AV. 2008. Molecular characterization of full-length MLV-related endogenous retrovirus ChiRV1 from the chicken, Gallus gallus. Virology 376:199-204.
-
(2008)
Virology
, vol.376
, pp. 199-204
-
-
Borysenko, L.1
Stepanets, V.2
Rynditch, A.V.3
-
23
-
-
0035008098
-
Identification of a new gene family specifically expressed in chicken embryonic stem cells and early embryo
-
Acloque H, et al. 2001. Identification of a new gene family specifically expressed in chicken embryonic stem cells and early embryo. Mech. Dev. 103:79-91.
-
(2001)
Mech. Dev
, vol.103
, pp. 79-91
-
-
Acloque, H.1
-
24
-
-
3242677400
-
FET-1: A novel W-linked, female specific gene up-regulated in the embryonic chicken ovary
-
Reed KJ, Sinclair AH. 2002. FET-1: a novel W-linked, female specific gene up-regulated in the embryonic chicken ovary. Mech. Dev. 119:S87-S90.
-
(2002)
Mech. Dev
, vol.119
-
-
Reed, K.J.1
Sinclair, A.H.2
-
25
-
-
68449102355
-
OVEX1, a novel chicken endogenous retrovirus with sex-specific and left-right asymmetrical expression in gonads
-
Carré-Eusèbe D, Coudouel N, Magre S. 2009. OVEX1, a novel chicken endogenous retrovirus with sex-specific and left-right asymmetrical expression in gonads. Retrovirology 6:59.
-
(2009)
Retrovirology
, vol.6
, pp. 59
-
-
Carré-Eusèbe, D.1
Coudouel, N.2
Magre, S.3
-
26
-
-
0032424919
-
Tumor cells expressing a retroviral envelope escape immune rejection in vivo
-
Mangeney M, Heidmann T. 1998. Tumor cells expressing a retroviral envelope escape immune rejection in vivo. Proc. Natl. Acad. Sci. U. S. A. 95:14920-14925.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A
, vol.95
, pp. 14920-14925
-
-
Mangeney, M.1
Heidmann, T.2
-
27
-
-
18144416157
-
Evolution and distribution of class II-related endogenous retroviruses
-
Gifford R, Kabat P, Martin J, Lynch C, Tristem M. 2005. Evolution and distribution of class II-related endogenous retroviruses. J. Virol. 79: 6478-6486.
-
(2005)
J. Virol
, vol.79
, pp. 6478-6486
-
-
Gifford, R.1
Kabat, P.2
Martin, J.3
Lynch, C.4
Tristem, M.5
-
28
-
-
0028829920
-
HPRS-103 (exogenous avian leuko-sis virus, subgroup J) has an env gene related to those of endogenous elements EAV-0 and E51 and an E element found previously only in sarcoma viruses
-
Bai J, Payne LN, Skinner MA. 1995. HPRS-103 (exogenous avian leuko-sis virus, subgroup J) has an env gene related to those of endogenous elements EAV-0 and E51 and an E element found previously only in sarcoma viruses. J. Virol. 69:779-784.
-
(1995)
J. Virol
, vol.69
, pp. 779-784
-
-
Bai, J.1
Payne, L.N.2
Skinner, M.A.3
-
29
-
-
84863146682
-
Molecular epidemiology of avian leukosis virus subgroup J in layer flocks in China
-
Gao Y, et al. 2012. Molecular epidemiology of avian leukosis virus subgroup J in layer flocks in China. J. Clin. Microbiol. 50:953-960.
-
(2012)
J. Clin. Microbiol
, vol.50
, pp. 953-960
-
-
Gao, Y.1
-
30
-
-
19344375031
-
Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences
-
Mitchell RS, et al. 2004. Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences. PLoS Biol. 2:e234.
-
(2004)
PLoS Biol
, vol.e234
, pp. 2
-
-
Mitchell, R.S.1
-
31
-
-
19944432437
-
The repetitive landscape of the chicken genome
-
Wicker T, et al. 2005. The repetitive landscape of the chicken genome. Genome Res. 15:126-136.
-
(2005)
Genome Res
, vol.15
, pp. 126-136
-
-
Wicker, T.1
-
32
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
33
-
-
80054976678
-
The evolution of gene expression levels in mammalian organs
-
Brawand D, et al. 2011. The evolution of gene expression levels in mammalian organs. Nature 478:343-347.
-
(2011)
Nature
, vol.478
, pp. 343-347
-
-
Brawand, D.1
-
34
-
-
62549134121
-
Genome-wide analysis of in vivo translation with nucleotide resolution using ribosome profiling
-
Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS. 2009. Genome-wide analysis of in vivo translation with nucleotide resolution using ribosome profiling. Science 324:218-223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
35
-
-
0026315967
-
Nonsense codons within the Rous sarcoma virus gag gene decrease the stabilityofunspliced viral RNA
-
Barker GF, Beemon K. 1991. Nonsense codons within the Rous sarcoma virus gag gene decrease the stabilityofunspliced viral RNA. Mol. Cell. Biol. 11:2760-2768.
-
(1991)
Mol. Cell. Biol
, vol.11
, pp. 2760-2768
-
-
Barker, G.F.1
Beemon, K.2
-
36
-
-
27344432183
-
Use of endogenous retroviral sequences (ERVs) and structural markers for retroviral phylogenetic inference and taxonomy
-
Jern P, Sperber GO, Blomberg J. 2005. Use of endogenous retroviral sequences (ERVs) and structural markers for retroviral phylogenetic inference and taxonomy. Retrovirology 2:50.
-
(2005)
Retrovirology
, vol.2
, pp. 50
-
-
Jern, P.1
Sperber, G.O.2
Blomberg, J.3
-
39
-
-
0035135091
-
Evolution and characterization of tetraonine endogenous retrovirus: A new virus related to avian sarcoma and leukosis viruses
-
Dimcheff DE, Krishnan M, Mindell DP. 2001. Evolution and characterization of tetraonine endogenous retrovirus: a new virus related to avian sarcoma and leukosis viruses. J. Virol. 75:2002-2009.
-
(2001)
J. Virol
, vol.75
, pp. 2002-2009
-
-
Dimcheff, D.E.1
Krishnan, M.2
Mindell, D.P.3
-
40
-
-
0034004489
-
Cospecia-tion and horizontal transmission of avian sarcoma and leukosis virus gag genes in galliform birds
-
Dimcheff DE, Drovetski SV, Krishnan M, Mindell DP. 2000. Cospecia-tion and horizontal transmission of avian sarcoma and leukosis virus gag genes in galliform birds. J. Virol. 74:3984-3995.
-
(2000)
J. Virol
, vol.74
, pp. 3984-3995
-
-
Dimcheff, D.E.1
Drovetski, S.V.2
Krishnan, M.3
Mindell, D.P.4
-
41
-
-
84862886541
-
The transposable element profile of the anolis genome: How a lizard can provide insights into the evolution of vertebrate genome size and structure
-
Tollis M, Boissinot S. 2011. The transposable element profile of the anolis genome: how a lizard can provide insights into the evolution of vertebrate genome size and structure. Mob. Genet. Elements 1:107-111.
-
(2011)
Mob. Genet Elements
, vol.1
, pp. 107-111
-
-
Tollis, M.1
Boissinot, S.2
-
42
-
-
24644489049
-
Integration targeting by avian sarcoma-leukosis virus and human immunodeficiency virus in the chicken genome
-
Barr SD, Leipzig J, Shinn P, Ecker JR, Bushman FD. 2005. Integration targeting by avian sarcoma-leukosis virus and human immunodeficiency virus in the chicken genome. J. Virol. 79:12035-12044.
-
(2005)
J. Virol
, vol.79
, pp. 12035-12044
-
-
Barr, S.D.1
Leipzig, J.2
Shinn, P.3
Ecker, J.R.4
Bushman, F.D.5
-
43
-
-
34249088350
-
Genome-wide transcription and the implications for genomic organization
-
Kapranov P, Willingham AT, Gingeras TR. 2007. Genome-wide transcription and the implications for genomic organization. Nat. Rev. Genet. 8:413-423.
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 413-423
-
-
Kapranov, P.1
Willingham, A.T.2
Gingeras, T.R.3
-
44
-
-
40749094018
-
Cohesin complex promotes transcrip-tional termination between convergent genes in S. pombe
-
Gullerova M, Proudfoot NJ. 2008. Cohesin complex promotes transcrip-tional termination between convergent genes in S. pombe. Cell 132:983-995.
-
(2008)
Cell
, vol.132
, pp. 983-995
-
-
Gullerova, M.1
Proudfoot, N.J.2
-
45
-
-
45949109669
-
MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences
-
Kumar S, Nei M, Dudley J, Tamura K. 2008. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 9:299-306.
-
(2008)
Brief. Bioinform
, vol.9
, pp. 299-306
-
-
Kumar, S.1
Nei, M.2
Dudley, J.3
Tamura, K.4
-
47
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25:1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
48
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, et al. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28:511-515.
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
|