메뉴 건너뛰기




Volumn 12, Issue 4, 2012, Pages 335-337

RaxmlGUI: A graphical front-end for RAxML

Author keywords

Graphical user interface; Maximum likelihood; Phylogenetic analyses; Python; Rapid bootstrap; RAxML

Indexed keywords

ACCURACY ASSESSMENT; ALGORITHM; AUTOMATION; DATA SET; GRAPHICAL METHOD; MOLECULAR ANALYSIS; PHYLOGENETICS; SOFTWARE;

EID: 84860434973     PISSN: 14396092     EISSN: 16181077     Source Type: Journal    
DOI: 10.1007/s13127-011-0056-0     Document Type: Article
Times cited : (2792)

References (14)
  • 1
    • 78650445809 scopus 로고    scopus 로고
    • Recent trends in molecular phylogenetic analysis: Where to next?
    • Blair, C., & Murphy, R. W. (2011). Recent trends in molecular phylogenetic analysis: where to next? Journal of Heredity, 102, 130-138.
    • (2011) Journal of Heredity , vol.102 , pp. 130-138
    • Blair, C.1    Murphy, R.W.2
  • 2
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon, S., Duyfayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology, 59, 307-321.
    • (2010) Systematic Biology , vol.59 , pp. 307-321
    • Guindon, S.1    Duyfayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 3
    • 84870537452 scopus 로고    scopus 로고
    • Preparing RAxML for the SPEC MPI benchmark suite
    • S. Wagner, M. Steinmetz, A. Bode, & M. M. Müller Eds., Garching/Munich 2009, Berlin: Springer
    • Ott, M., & Stamatakis, A. (2010). Preparing RAxML for the SPEC MPI Benchmark Suite. In S. Wagner, M. Steinmetz, A. Bode, & M. M. Müller (Eds.), High Performance Computing in Science and Engineering, Garching/Munich 2009, Part 8 (pp. 757-768). Berlin: Springer.
    • (2010) High Performance Computing in Science and Engineering , Issue.PART 8 , pp. 757-768
    • Ott, M.1    Stamatakis, A.2
  • 4
    • 79955812119 scopus 로고    scopus 로고
    • Uncovering hidden phylogenetic consensus in large datasets. IEEE/ACM transactions on computational biology and bioinformatics, 03 Feb. 2011
    • Pattengale, N. D., Aberer, A. J., Swenson, K. M., Stamatakis, A., & Moret, B. M. E. (2011). Uncovering hidden phylogenetic consensus in large datasets. IEEE/ACM transactions on computational biology and bioinformatics, 03 Feb. 2011. IEEE computer Society Digital Library. IEEE Computer Society, http://doi.ieeecomputersociety.org/10.1109/TCBB.2011.28
    • (2011) IEEE Computer Society Digital Library. IEEE Computer Society
    • Pattengale, N.D.1    Aberer, A.J.2    Swenson, K.M.3    Stamatakis, A.4    Moret, B.M.E.5
  • 7
    • 0010902174 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods and combining nonnested models with applications to phylogenetic tree selection
    • Shimodaira, H. (2001). Multiple comparisons of log-likelihoods and combining nonnested models with applications to phylogenetic tree selection. Communications in Statistics - Theory and Methods, 30, 1751-1772.
    • (2001) Communications in Statistics - Theory and Methods , vol.30 , pp. 1751-1772
    • Shimodaira, H.1
  • 8
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. (2006a). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 10
    • 81855164300 scopus 로고    scopus 로고
    • Accessed 8 December 2010
    • Stamatakis, A. (2008). The RAxML 7.0.4 manual. http://icwww.epfl.ch/ ~stamatak/index-Dateien/countManual7.0.4.php. Accessed 8 December 2010.
    • (2008) The RAxML 7.0.4 Manual
    • Stamatakis, A.1
  • 11
    • 77954199422 scopus 로고    scopus 로고
    • Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data
    • ISMB 2010
    • Stamatakis, A., & Alachiotis, N. (2010). Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data. Bioinformatics, 26, ISMB 2010, i132-i139.
    • (2010) Bioinformatics , vol.26
    • Stamatakis, A.1    Alachiotis, N.2
  • 12
    • 34548446701 scopus 로고    scopus 로고
    • Exploring new search algorithms and hardware for phylogenetics: RAxML meets the IBM cell
    • doi:10.1007/s11265-007-0067-4
    • Stamatakis, A., Blagojevic, F., Nikolopoulos, D. S., & Antonopoulos, C. D. (2007). Exploring new search algorithms and hardware for phylogenetics: RAxML meets the IBM cell. Journal of VLSI Signal Processing, 48, 271-286. doi:10.1007/s11265-007-0067-4
    • (2007) Journal of VLSI Signal Processing , vol.48 , pp. 271-286
    • Stamatakis, A.1    Blagojevic, F.2    Nikolopoulos, D.S.3    Antonopoulos, C.D.4
  • 13
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML web servers
    • Stamatakis, A., Hoover, P., & Rougemont, J. (2008). A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology, 57, 758-771.
    • (2008) Systematic Biology , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 14
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • Yang, Z. (1994). Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. Journal of Molecular Evolution, 39, 306-314.
    • (1994) Journal of Molecular Evolution , vol.39 , pp. 306-314
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.