Infectious endogenous retroviruses in cats and emergence of recombinant viruses

Journal of Virology

Volumn 86, Issue 16, 2012, Pages 8634-8644

  Anai, Yukari ^a   Ochi, Haruyo ^a   Watanabe, Shinya ^a   Nakagawa, So ^b,c   Kawamura, Maki ^a   Gojobori, Takashi ^b   Nishigaki, Kazuo ^a  

^a YAMAGUCHI UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF GENETICS   (Japan)

^c HARVARD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CAT; DNA SEQUENCE; ENDOGENOUS RETROVIRUS; FELINE LEUKEMIA VIRUS; GENE INSERTION; GENE LOCUS; GENETIC POLYMORPHISM; HETEROZYGOTE; HOMOZYGOTE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; RETROVIRUS INFECTION; SEQUENCE HOMOLOGY; VIRUS CHARACTERIZATION; VIRUS DETECTION; VIRUS DNA CELL DNA INTERACTION; VIRUS ENTRY; VIRUS INFECTIVITY; VIRUS MORPHOLOGY; VIRUS RECOMBINANT; VIRUS TRANSMISSION;

ANIMALS; CATS; CLUSTER ANALYSIS; DNA, VIRAL; ENDOGENOUS RETROVIRUSES; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; RECOMBINATION, GENETIC; RETROVIRIDAE INFECTIONS; SEQUENCE ANALYSIS, DNA;

EID: 84865079289     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.00280-12     Document Type: Article

References (44)

1. Benveniste RE, Todaro GJ. 1974. Evolution of C-type viral genes: inheritance of exogenously acquired viral genes. Nature 252:456-459.
2. Benveniste RE, Sherr CJ, Todaro GJ. 1975. Evolution of type C viral genes: origin of feline leukemia virus. Science 190:886-888.
3. Beyer W, Mohring R, Drescher B, Notzel U, Rosenthal S. 1987. Molecular cloning of an endogenous cat retroviral element (ECE 1)-a recombinant between RD-114 and FeLV-related sequences. Brief report. Arch. Virol. 96:297-301.
4. Boeke JD, Stoye JP. 1997. Retrotransposons, endogenous retroviruses, and the evolution of retroelements, p 343-436. In Coffin JM, Hughes SH, Varmus HE (ed), Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
5. Bonner TI, Todaro GJ. 1979. Carnivores have sequences in their cellular DNA distantly related to the primate endogenous virus, MAC-1. Virology 94:224-227.
6. Darriba D, Taboada GL, Doallo R, Posada D. 2011. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27:1164-1165.
7. Delviks-Frankenberry K, et al. 2011. Mechanisms and factors that influence high frequency retroviral recombination. Viruses 3:1650-1680.
8. Dimmic MW, Rest JS, Mindell DP, Goldstein RA. 2002. rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny. J. Mol. Evol. 55:65-73.
9. Dudley JP, Mertz JA, Bhadra S, Palmarini M, Kozak CA. 2011. Endogenous retroviruses and cancer, p. 119-162. In Dudley J (ed), Retroviruses and insights into cancer. Springer Press, New York, NY.
10. Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
11. Hardy WD, Jr. 1993. Feline oncoretroviruses, p 109-180. In Levy JA (ed), The Retroviridae, vol 2. Plenum Press, New York, NY.
12. Jarrett WF, Crawford EM, Martin WB, Davie F. 1964. A virus-like particle associated with leukemia (lymphosarcoma). Nature 202:567-569.
13. Johnson WE, et al. 2006. The late Miocene radiation of modern Felidae: a genetic assessment. Science 311:73-77.
14. Kato S, Matsuo K, Nishimura N, Takahashi N, Takano T. 1987. The entire sequence of baboon endogenous virus DNA: a chimeric structure of murine type C and simian type D retroviruses. Jpn. J. Genet. 62:127-137.
15. Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33: 511-518.
16. Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
17. Kitamura T, et al. 2003. Retrovirus-mediated gene transfer and expression cloning: powerful tools in functional genomics. Exp. Hematol. 31: 1007-1014.
18. Lander ES, et al. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
19. Le SQ, Gascuel O. 2008. An improved general amino acid replacement matrix. Mol. Biol. Evol. 25:1307-1320.
20. Lopez JV, Culver M, Stephens JC, Johnson WE, O'Brien SJ. 1997. Rates of nuclear and cytoplasmic mitochondrial DNA sequence divergence in mammals. Mol. Biol. Evol. 14:277-286.
21. Maksakova IA, Mager DL, Reiss D. 2008. Keeping active endogenous retroviral-like elements in check: the epigenetic perspective. Cell Mol. Life Sci. 65:3329-3347.
22. McAllister RM, et al. 1972. C-type virus released from cultured human rhabdomyosarcoma cells. Nat. New Biol. 235:3-6.
23. Mi S, et al. 2000. Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis. Nature 403:785-789.
24. Mullins JI, Casey JW, Nicolson MO, Burck KB, Davidson N. 1981. Sequence arrangement and biological activity of cloned feline leukemia virus proviruses from a virus-productive human cell line. J. Virol. 38:688-703.
25. Mura M, et al. 2004. Late viral interference induced by transdominant Gag of an endogenous retrovirus. Proc. Natl. Acad. Sci. U. S. A. 101: 11117-11122.
26. Nakamura Y, et al. 2010. An updated nation-wide epidemiological survey of feline immunodeficiency virus (FIV) infection in Japan. J. Vet. Med. Sci. 72:1051-1056.
27. Nishigaki K, et al. 2002. Analysis of the disease potential of a recombinant retrovirus containing Friend murine leukemia virus sequences and a unique long terminal repeat from feline leukemia virus. J. Virol. 76:1527-1532.
28. Okeoma CM, Ross SR. 2011. Genetics of host resistance to retroviruses and cancer, p 95-118. In Dudley J (ed), Retroviruses and insights into cancer. Springer Press, New York, NY.
29. Overbaugh J, Riedel N, Hoover EA, Mullins JI. 1988. Transduction of endogenous envelope genes by feline leukaemia virus in vitro. Nature 332:731-734.
30. Paprotka T, et al. 2011. Recombinant origin of the retrovirus XMRV. Science 333:97-101.
31. Polani S, Roca AL, Rosensteel BB, Kolokotronis SO, Bar-Gal GK. 2010. Evolutionary dynamics of endogenous feline leukemia virus proliferation among species of the domestic cat lineage. Virology 405:397-407.
32. Rannala B, Yang Z. 2007. Inferring speciation times under an episodic molecular clock. Syst. Biol. 56:453-466.
33. Riedel N, Hoover EA, Gasper PW, Nicolson MO, Mullins JI. 1986. Molecular analysis and pathogenesis of the feline aplastic anemia retrovirus, feline leukemia virus C-Sarma. J. Virol. 60:242-250.
34. Sambrook J, Russell DW. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
35. Sperber GO, Airola T, Jern P, Blomberg J. 2007. Automated recognition of retroviral sequences in genomic data-RetroTector. Nucleic Acids Res. 35:4964-4976.
36. Spodick DA, Ghosh AK, Parimoo S, Roy-Burman P. 1988. The long terminal repeat of feline endogenous RD-114 retroviral DNAs: analysis of transcription regulatory activity and nucleotide sequence. Virus Res. 9:263-283.
37. Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
38. Stewart MA, et al. 1986. Nucleotide sequences of a feline leukemia virus subgroup A envelope gene and long terminal repeat and evidence for the recombinational origin of subgroup B viruses. J. Virol. 58:825-834.
39. Todaro GJ, Benveniste RE, Sherwin SA, Sherr CJ. 1978. MAC-1, a new genetically transmitted type C virus of primates: "low frequency" activation from stumptail monkey cell cultures. Cell 13:775-782.
40. Umehara D, et al. 2010. Role of phosphatidylinositol 3-kinase in friend spleen focus-forming virus-induced erythroid disease. J. Virol. 84:7675-7682.
41. van der Kuyl AC, Dekker JT, Goudsmit J. 1999. Discovery of a new endogenous type C retrovirus (FcEV) in cats: evidence for RD-114 being an FcEV(Gag-Pol)/baboon endogenous virus BaEV(Env) recombinant. J. Virol. 73:7994-8002.
42. Waterston RH, et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562.
43. Wolf D, Goff SP. 2008. Host restriction factors blocking retroviral replication. Annu. Rev. Genet. 42:143-163.
44. Yoshinaka Y, Katoh I, Copeland TD, Oroszlan S. 1985. Murine leukemia virus protease is encoded by the gag-pol gene and is synthesized through suppression of an amber termination codon. Proc. Natl. Acad. Sci. U. S. A. 82:1618-1622.