Unfolding and refolding of a protein by cholesterol and cyclodextrin: A single molecule study

Physical Chemistry Chemical Physics

Volumn 17, Issue 12, 2015, Pages 8017-8027

  Ghosh, Shirsendu ^a   Ghosh, Catherine ^a   Nandi, Somen ^a   Bhattacharyya, Kankan ^a  

^a DEPARTMENT OF MATERIALS SCIENCE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

BETA CYCLODEXTRIN; BETA CYCLODEXTRIN DERIVATIVE; CHOLESTEROL; SERUM ALBUMIN;

CHEMICAL PHENOMENA; CHEMISTRY; CIRCULAR DICHROISM; FLUORESCENCE RESONANCE ENERGY TRANSFER; HUMAN; HYDRODYNAMICS; METABOLISM; MOLECULAR DYNAMICS; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN TERTIARY STRUCTURE;

BETA-CYCLODEXTRINS; CHOLESTEROL; CIRCULAR DICHROISM; FLUORESCENCE RESONANCE ENERGY TRANSFER; HUMANS; HYDRODYNAMICS; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; MOLECULAR DYNAMICS SIMULATION; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; SERUM ALBUMIN;

EID: 84925003064     PISSN: 14639076     EISSN: None     Source Type: Journal    
DOI: 10.1039/c5cp00385g     Document Type: Article

References (71)

1. P. G. Wolynes, Protein Folding, Misfolding and Aggregation: Classical Themes and Novel Approaches, RSC Publishing, 1st edn, 2008, ch. 3, pp. 49-69
2. B. Jana F. Morcosa J. N. Onuchic Phys. Chem. Chem. Phys. 2014 16 6496 6507
3. B. Bagchi, Water in Biological and Chemical Processes, Cambridge University Press, 1st edn, 2013, ch. 6-8, pp. 79-132
4. B. Bagchi B. Jana Chem. Soc. Rev. 2010 39 1936 1954
5. R. P. Bywater J. Biomol. Struct. Dyn. 2013 31 351 362
6. V. N. Uversky J. R. Gillespie A. L. Fink Proteins: Struct., Funct., Genet. 2000 41 415 427
7. V. N. Uversky Cell. Mol. Life Sci. 2003 60 1852 1871
8. S. Hayward A. Kitao H. J. C. Berendsen Proteins: Struct., Funct., Genet. 1997 27 425 437
9. P. R. Banerjee A. A. Deniz Chem. Soc. Rev. 2014 43 1172 1188
10. J. Choi S. Kim T. Tachikawa M. Fujitsuka T. Majima Phys. Chem. Chem. Phys. 2011 13 5651 5658
11. J. Choi S. Kim T. Tachikawa M. Fujitsuka T. Majima J. Am. Chem. Soc. 2011 133 16146 16153
12. S. Basak K. Chattopadhyay Phys. Chem. Chem. Phys. 2014 16 11139 11149
13. S. Haldar K. Chattopadhyay J. Biol. Chem. 2012 287 11546 11555
14. K. Chattopadhyay S. Saffarian E. L. Elson C. Frieden Biophys. J. 2005 88 1413 1422
15. S. B. Lioi X. Wang M. R. Islam E. J. Danoff D. S. English Phys. Chem. Chem. Phys. 2009 11 9315 9325
16. K. A. Goodson Z. Wang A. R. Haeusler J. D. Kahn D. S. English J. Phys. Chem. B 2013 117 4713 4722
17. U. Anand S. Mukherjee Phys. Chem. Chem. Phys. 2013 15 9375 9383
18. U. Anand C. Jash S. Mukherjee Phys. Chem. Chem. Phys. 2011 13 20418 20426
19. R. Chowdhury S. Chattoraj S. Sen Mojumdar K. Bhattacharyya Phys. Chem. Chem. Phys. 2013 15 16286 16293
20. S. Sen Mojumdar R. Chowdhury S. Chattoraj K. Bhattacharyya J. Phys. Chem. B 2012 116 12189 12198
21. D. K. Sasmal T. Mondal S. Sen Mojumdar A. Choudhury R. Banerjee K. Bhattacharyya J. Phys. Chem. B 2011 115 13075 13083
22. T. A. Page N. D. Kraut P. M. Page G. A. Baker F. V. Bright J. Phys. Chem. B 2009 113 12825 12830
23. R. V. Rariy A. M. Klibanov Proc. Natl. Acad. Sci. U. S. A. 1997 94 13520 13523
24. S. Roy B. Jana B. Bagchi J. Chem. Phys. 2012 136 115103
25. S. Ghosh S. Chattoraj R. Chowdhury K. Bhattacharyya RSC Adv. 2014 4 14378 14384
26. S. Chattoraj A. K. Mandal K. Bhattacharyya J. Chem. Phys. 2014 140 115105
27. R. Ghosh S. Roy B. Bagchi J. Phys. Chem. B 2013 117 15625 15638
28. Z. Xia P. Das E. I. Shakhnovich R. Zhou J. Am. Chem. Soc. 2012 134 18266 18274
29. A. J. Gupta S. Haldar G. Miličić F. U. Hartl M. Hayer-Hartl J. Mol. Biol. 2014 426 2739 2754
30. F. U. Hartl A. Bracher M. Hayer-Hartl Nature 2011 475 324 332
31. H. Saibil Nat. Rev. Mol. Cell Biol. 2013 14 630 642
32. D. Rozema S. H. Gellman J. Am. Chem. Soc. 1995 117 2373 2374
33. C. A. López A. H. de Vries S. J. Marrink PLoS Comput. Biol. 2011 7 e1002020
34. F. Cavalieri E. Chiessi G. Paradossi Soft Matter 2007 3 718 724
35. G. M. Seddon R. P. Bywater Accelerated simulation of unfolding and refolding of a large single chain globular protein Open Biol. 2012 2 120087
36. G. M. Seddon R. P. Bywater Inactivation and reactivation of ribonuclease: a studied by computer simulation Open Biol. 2012 2 120088
37. Z. Petrasek P. Schwille Biophys. J. 2008 94 1437 1448
38. E. Sherman A. Itkin Y. Y. Kuttner E. Rhoades D. Amir E. Haas G. Haran Biophys. J. 2008 94 4819 4827
39. H. Yang G. Luo P. Karnchanaphanurach T. M. Louie I. Rech S. Cova L. Xun X. S. Xie Science 2003 302 262 266
40. H. Chen E. Rhoades J. S. Butler S. N. Loh W. W. Webb Proc. Natl. Acad. Sci. U. S. A. 2007 104 10459 10464
41. R. Yadav B. Sengupta P. Sen J. Phys. Chem. B 2014 118 5428 5438
42. S. Sen Mojumdar S. Ghosh T. Mondal K. Bhattacharyya Langmuir 2012 28 10230 10237
43. S. Ghosh A. K. Mandal A. K. Das T. Mondal K. Bhattacharyya Phys. Chem. Chem. Phys. 2012 14 9749 9757
44. E. M. S. Stennett M. A. Ciuba M. Levitus Chem. Soc. Rev. 2014 43 1057 1075
45. D. Charbonneau M. Beauregard H.-A. Tajmir-Riahi J. Phys. Chem. B 2009 113 1777 1784
46. I. Hasni P. Bourassa H.-A. Tajmir-Riahi J. Phys. Chem. B 2011 115 6683 6690
47. D. Charbonneau H.-A. Tajmir-Riahi J. Phys. Chem. B 2010 114 1148 1155
48. B. Sudhamalla M. Gokara N. Ahalawat D. G. Amooru R. Subramanyam J. Phys. Chem. B 2010 114 9054 9062
49. M. Rajapaksha J. Kaur M. Bose R. M. Whittal H. S. Bose Biochemistry 2013 52 7242 7253
50. A. W. Smith Biochim. Biophys. Acta 2012 1818 172 177
51. Y. D. Paila S. Tiwari A. Chattopadhyay Biochim. Biophys. Acta, Biomembr. 2009 1788 295 302
52. T. M. Fong M. G. McNamee Biochemistry 1987 26 3871 3880
53. J. Rossjohn S. C. Feil W. J. McKinstry R. K. Tweten M. W. Parker Cell 1997 89 685 692
54. Y. Yano K. Kondo R. Kitani A. Yamamoto K. Matsuzaki Biochemistry 2015 54 1371 1379
55. C. Kim Y.-L. Hsieh Colloids Surf., A 2001 187 385 397
56. R. Wang S. Sun E. Bekos F. V. Bright Anal. Chem. 1995 67 149 159
57. O. H. Lowry N. J. Rosebrough A. L. Farr R. J. Randall J. Biol. Chem. 1951 193 265 275
58. G. Bonnet O. Krichevsky A. Libchaber Proc. Natl. Acad. Sci. U. S. A. 1998 95 8602 8606
59. R. Leventis J. R. Silvius Biophys. J. 2001 81 2257 2267
60. J. Mascetti S. Castano D. Cavagnat B. Desbat Langmuir 2008 24 9616 9622
61. P. G. Yancey W. V. Rodrigueza E. P. C. Kilsdonk G. W. Stoudt W. J. Johnson M. C. Phillips G. H. Rothblat J. Biol. Chem. 1996 271 16026 16034
62. B. Dzikovski D. Tipikin V. Livshits K. Earleac J. Freed Phys. Chem. Chem. Phys. 2009 11 6676 6688
63. W.-X. Gu Y.-W. Yang J. Wen H. Lu H. Gao Polym. Chem. 2014 5 6344 6349
64. M. P. Beseničar A. Bavdek A. Kladnik P. Maček G. Anderluh Biochim. Biophys. Acta 2008 1778 175 184
65. A. Tsamaloukas H. Szadkowska P. J. Slotte H. Heerklotz Biophys. J. 2005 89 1109 1119
66. R. O. Williams V. Mahaguna M. Sriwongjanya Eur. J. Pharm. Biopharm. 1998 46 355 360
67. G. Deleage C. Geourjon CABIOS, Comput. Appl. Biosci. 1993 9 197 199
68. G. Markus F. Karush J. Am. Chem. Soc. 1957 79 134 139
69. M. E. Haberland J. A. Reynolds Proc. Natl. Acad. Sci. U. S. A. 1973 70 2313 2316
70. Y. Yu C. Chipot W. Cai X. Shao J. Phys. Chem. B 2006 110 6372 6378
71. S. Ghosh B. K. Paul N. Chattopadhyay J. Chem. Sci. 2014 126 931 944