-
1
-
-
0023613529
-
Normal modes of vibration in bovine pancreatic inhibitor and its mechanical properties
-
Nishikawa, T., Go, N. Normal modes of vibration in bovine pancreatic inhibitor and its mechanical properties. Proteins 2:308-329, 1987.
-
(1987)
Proteins
, vol.2
, pp. 308-329
-
-
Nishikawa, T.1
Go, N.2
-
2
-
-
0000453761
-
Domain motions in proteins
-
Schulz, G.E. Domain motions in proteins. Curr. Opin. Struct. Biol. 1:883-888, 1991.
-
(1991)
Curr. Opin. Struct. Biol.
, vol.1
, pp. 883-888
-
-
Schulz, G.E.1
-
3
-
-
0028335096
-
Structural mechanisms for domain movements in proteins
-
Gerstein, M., Lesk, A.M., Chothia, C. Structural mechanisms for domain movements in proteins. Biochemistry 33:6739-6749, 1994.
-
(1994)
Biochemistry
, vol.33
, pp. 6739-6749
-
-
Gerstein, M.1
Lesk, A.M.2
Chothia, C.3
-
4
-
-
0025047629
-
A mutant T4 lysozyme displays five different crystal conformations
-
Faber, H.R., Matthews, B.W. A mutant T4 lysozyme displays five different crystal conformations. Nature 348:263-266, 1990.
-
(1990)
Nature
, vol.348
, pp. 263-266
-
-
Faber, H.R.1
Matthews, B.W.2
-
5
-
-
0020771265
-
Dynamics of a small globular protein in terms of low-frequency vibrational modes
-
Go, N., Noguti, T., Nishikawa, T. Dynamics of a small globular protein in terms of low-frequency vibrational modes. Proc. Natl. Acad. Sci. U.S.A. 80:3696-3700, 1983.
-
(1983)
Proc. Natl. Acad. Sci. U.S.A.
, vol.80
, pp. 3696-3700
-
-
Go, N.1
Noguti, T.2
Nishikawa, T.3
-
6
-
-
0000991642
-
Harmonic dynamics of proteins: Normal modes and fluctuations in bovine pancreatic trypsin inhibitor
-
Brooks, B., Karplus, M. Harmonic dynamics of proteins: Normal modes and fluctuations in bovine pancreatic trypsin inhibitor. Proc. Natl. Acad. Sci. U.S.A. 80:6571-6575, 1983.
-
(1983)
Proc. Natl. Acad. Sci. U.S.A.
, vol.80
, pp. 6571-6575
-
-
Brooks, B.1
Karplus, M.2
-
7
-
-
84990678054
-
The normal modes of a protein: Native bovine pancreatic trypsin inhibitor
-
Levitt, M., Sander, C., Stern, P.S. The normal modes of a protein: Native bovine pancreatic trypsin inhibitor. Int. J. Quant. Chem. 10:181-199, 1983.
-
(1983)
Int. J. Quant. Chem.
, vol.10
, pp. 181-199
-
-
Levitt, M.1
Sander, C.2
Stern, P.S.3
-
8
-
-
0028331255
-
Normal mode analysis of protein dynamics
-
Case, D.A. Normal mode analysis of protein dynamics. Curr. Opin. Struct. Biol. 4:285-290, 1994.
-
(1994)
Curr. Opin. Struct. Biol.
, vol.4
, pp. 285-290
-
-
Case, D.A.1
-
9
-
-
0000081668
-
Collective variable description of native protein dynamics
-
Hayward, S., Go, N. Collective variable description of native protein dynamics. Annu. Rev. Phys. Chem. 46:223-250, 1995.
-
(1995)
Annu. Rev. Phys. Chem.
, vol.46
, pp. 223-250
-
-
Hayward, S.1
Go, N.2
-
10
-
-
0026663419
-
Normal mode refinement: Crystallographic refinement of protein dynamic structure. I. Theory and test by simulated diffraction data
-
Kidera, A., Go, N. Normal mode refinement: Crystallographic refinement of protein dynamic structure. I. Theory and test by simulated diffraction data. J. Mol. Biol. 225:457-475, 1992.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 457-475
-
-
Kidera, A.1
Go, N.2
-
11
-
-
0026717834
-
Normal mode refinement: Crystallographic refinement of protein dynamic structure. II. Application to human lysozyme
-
Kidera, A., Inaka, K., Matsushima, M., Go, N. Normal mode refinement: Crystallographic refinement of protein dynamic structure. II. Application to human lysozyme. J. Mol. Biol. 225:477-486, 1992.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 477-486
-
-
Kidera, A.1
Inaka, K.2
Matsushima, M.3
Go, N.4
-
12
-
-
0028292635
-
Harmonic and anharmonic aspects in the dynamics of BPTI: A normal mode analysis and principal component analysis
-
Hayward, S., Kitao, A., Go, N. Harmonic and anharmonic aspects in the dynamics of BPTI: A normal mode analysis and principal component analysis. Protein Sci. 3:936-943, 1994.
-
(1994)
Protein Sci.
, vol.3
, pp. 936-943
-
-
Hayward, S.1
Kitao, A.2
Go, N.3
-
13
-
-
0028877423
-
Harmonicity and anharmonicity in protein dynamics: A normal mode analysis and principal component analysis
-
Hayward, S., Kitao, A., Go, N. Harmonicity and anharmonicity in protein dynamics: A normal mode analysis and principal component analysis. Proteins 23:177-186, 1995.
-
(1995)
Proteins
, vol.23
, pp. 177-186
-
-
Hayward, S.1
Kitao, A.2
Go, N.3
-
14
-
-
84986473952
-
Harmonic analysis of large systems. III. Comparison with molecular dynamics
-
Janezic, D., Venable, R.M., Brooks, B.R. Harmonic analysis of large systems. III. Comparison with molecular dynamics. J. Comp. Chem. 16:1554-1566, 1995.
-
(1995)
J. Comp. Chem.
, vol.16
, pp. 1554-1566
-
-
Janezic, D.1
Venable, R.M.2
Brooks, B.R.3
-
15
-
-
0021449809
-
Quasi-harmonic method for studying very low frequency modes in proteins
-
Levy, R.M., Srinivasan, A.R., Olson, W.K., McCammon, J.A. Quasi-harmonic method for studying very low frequency modes in proteins. Biopolymers 23:1099-1112, 1984.
-
(1984)
Biopolymers
, vol.23
, pp. 1099-1112
-
-
Levy, R.M.1
Srinivasan, A.R.2
Olson, W.K.3
McCammon, J.A.4
-
16
-
-
84986472098
-
Conformational dynamics of polypeptides and proteins in the dihredral angle space and in the cartesian coordinate space: Normal mode analysis of decaalanine
-
Kitao, A., Go, N. Conformational dynamics of polypeptides and proteins in the dihredral angle space and in the cartesian coordinate space: Normal mode analysis of decaalanine. J. Comp. Chem. 12:359-368, 1991.
-
(1991)
J. Comp. Chem.
, vol.12
, pp. 359-368
-
-
Kitao, A.1
Go, N.2
-
17
-
-
0000577041
-
Large-amplitude nonlinear motions in proteins
-
Garcia, A.E. Large-amplitude nonlinear motions in proteins. Phys. Rev. Lett. 68:2696-2699, 1992.
-
(1992)
Phys. Rev. Lett.
, vol.68
, pp. 2696-2699
-
-
Garcia, A.E.1
-
18
-
-
0027732618
-
Effect of solvent on collective motions in globular proteins
-
Hayward, S., Kitao, A., Hirata, R, Go, N. Effect of solvent on collective motions in globular proteins. J. Mol. Biol. 234:1207-1217, 1993.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 1207-1217
-
-
Hayward, S.1
Kitao, A.2
Hirata, R.3
Go, N.4
-
19
-
-
0027441950
-
Essential dynamics of proteins
-
Amadei, A., Linssen, A.B.M., Berendsen, H.J.C. Essential dynamics of proteins. Proteins 17:412-425, 1993.
-
(1993)
Proteins
, vol.17
, pp. 412-425
-
-
Amadei, A.1
Linssen, A.B.M.2
Berendsen, H.J.C.3
-
20
-
-
0017163950
-
Hinge bending mode in lysozyme
-
McCammon, J.A., Gelin, B.R., Karplus, M., Wolynes, P.G. Hinge bending mode in lysozyme. Nature 262:325-326, 1976.
-
(1976)
Nature
, vol.262
, pp. 325-326
-
-
McCammon, J.A.1
Gelin, B.R.2
Karplus, M.3
Wolynes, P.G.4
-
21
-
-
0022111715
-
Normal modes for specific motions of macromolecules: Application to the hinge bending mode of lysozyme
-
Brooks, B., Karplus, M. Normal modes for specific motions of macromolecules: Application to the hinge bending mode of lysozyme. Proc. Natl. Acad. Sci. U.S.A. 82:4995-4999, 1985.
-
(1985)
Proc. Natl. Acad. Sci. U.S.A.
, vol.82
, pp. 4995-4999
-
-
Brooks, B.1
Karplus, M.2
-
22
-
-
0025066772
-
Normal mode analysis of human lysozyme: Study of the relative motion of the two domains and characterization of the harmonic motion
-
Gibrat, J., Go, N. Normal mode analysis of human lysozyme: Study of the relative motion of the two domains and characterization of the harmonic motion. Proteins 8:258-279, 1990.
-
(1990)
Proteins
, vol.8
, pp. 258-279
-
-
Gibrat, J.1
Go, N.2
-
23
-
-
0025753631
-
Projection of Monte Carlo and molecular dynamics trajectories onto the normal mode axes: Human lysozyme
-
Horiuchi, T., Go, N. Projection of Monte Carlo and molecular dynamics trajectories onto the normal mode axes: Human lysozyme. Proteins 10:106-116, 1991.
-
(1991)
Proteins
, vol.10
, pp. 106-116
-
-
Horiuchi, T.1
Go, N.2
-
25
-
-
0003763513
-
-
Toronto: University of Toronto Press
-
Kreyszig, E. "Differential Geometry." Toronto: University of Toronto Press, 1959.
-
(1959)
Differential Geometry
-
-
Kreyszig, E.1
-
26
-
-
0004021588
-
-
L, Reading, Mass., USA: Addison Wesley World Student Series
-
Goldstein, H. "Classical Mechanics." 2nd edit. L, Reading, Mass., USA: Addison Wesley World Student Series, 1980.
-
(1980)
"Classical Mechanics." 2nd Edit.
-
-
Goldstein, H.1
-
27
-
-
0027438949
-
Domain closure in lactoferrin
-
Gerstein, M., Anderson, B.F., Norris, G.E., Baker, E.N., Lesk, A.M., Chothia, C. Domain closure in lactoferrin. J. Mol. Biol. 234:357-372, 1993.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 357-372
-
-
Gerstein, M.1
Anderson, B.F.2
Norris, G.E.3
Baker, E.N.4
Lesk, A.M.5
Chothia, C.6
-
28
-
-
0029162947
-
Comparison of MD simulations and NMR experiments from hen lysozyme. Analysis of local fluctuations, coorperative motions and global changes
-
Smith, L.J., Mark, A.E., Dobson, C.M., van Gunsteren, W.F. Comparison of MD simulations and NMR experiments from hen lysozyme. Analysis of local fluctuations, coorperative motions and global changes. Biochemistry 34:10918-10931, 1995.
-
(1995)
Biochemistry
, vol.34
, pp. 10918-10931
-
-
Smith, L.J.1
Mark, A.E.2
Dobson, C.M.3
Van Gunsteren, W.F.4
-
29
-
-
0003831852
-
-
BIOMOS BV, Nijenborgh 4, 9747 AG Groningen, The Netherlands
-
van Gunsteren, W.F., Berendsen, H.J.C. Gromos-87 manual. BIOMOS BV, Nijenborgh 4, 9747 AG Groningen, The Netherlands, 1987.
-
(1987)
Gromos-87 Manual
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
30
-
-
0008348735
-
PRESTO(PRotein Engineering SimulaTOr): A vectorized molecular mechanics program for biopolymers
-
Morikami, K., Nakai, T., Kidera, A., Saito, M. PRESTO(PRotein Engineering SimulaTOr): A vectorized molecular mechanics program for biopolymers. Comput. Chem. 16:243-248, 1992.
-
(1992)
Comput. Chem.
, vol.16
, pp. 243-248
-
-
Morikami, K.1
Nakai, T.2
Kidera, A.3
Saito, M.4
-
31
-
-
84988053694
-
An all atom force field for simulations of proteins and nucleic acids
-
Weiner, S.J., Kollman, P.A., Nguyen, D.T., Case, D.A. An all atom force field for simulations of proteins and nucleic acids. J. Comp. Chem. 7:230-252, 1986.
-
(1986)
J. Comp. Chem.
, vol.7
, pp. 230-252
-
-
Weiner, S.J.1
Kollman, P.A.2
Nguyen, D.T.3
Case, D.A.4
-
32
-
-
77952490184
-
Tertiary structure of proteins. I. Representation and computation of the conformations
-
Nishikawa, K., Ooi, T., Isogai, Y., Saito, N. Tertiary structure of proteins. I. Representation and computation of the conformations. J. Phys. Soc. (Jpn.) 32:1331-1337, 1972.
-
(1972)
J. Phys. Soc. (Jpn.)
, vol.32
, pp. 1331-1337
-
-
Nishikawa, K.1
Ooi, T.2
Isogai, Y.3
Saito, N.4
-
33
-
-
0003422324
-
-
New York: Dover Publications
-
Bright Wilson, Jr., E., Decius, J.C., Cross, P.C. "Molecular Vibrations: The Theory of Infrared and Raman Vibrational Spectra." New York: Dover Publications, 1980.
-
(1980)
"Molecular Vibrations: The Theory of Infrared and Raman Vibrational Spectra."
-
-
Bright Wilson Jr., E.1
Decius, J.C.2
Cross, P.C.3
-
35
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P.J. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24:946-950, 1991.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
36
-
-
0028057108
-
Raster3D Version 2.0. a program for photorealistic molecular graphics
-
Merrit, E.A., Murphy, M.E.P. Raster3D Version 2.0. A program for photorealistic molecular graphics. Acta Crystallogr. D50:869-873, 1994.
-
(1994)
Acta Crystallogr.
, vol.D50
, pp. 869-873
-
-
Merrit, E.A.1
Murphy, M.E.P.2
|