-
2
-
-
0037364791
-
Regulation of Aspergillus genes encoding plant cell wall polysaccharide-degrading enzymes; relevance for industrial production
-
De Vries RP. Regulation of Aspergillus genes encoding plant cell wall polysaccharide-degrading enzymes; relevance for industrial production. Appl Microbiol Biotechnol. 2003;61:10-20.
-
(2003)
Appl Microbiol Biotechnol
, vol.61
, pp. 10-20
-
-
Vries, R.P.1
-
3
-
-
84862977387
-
The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
-
Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, et al. The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science. 2012;336:1715-9.
-
(2012)
Science
, vol.336
, pp. 1715-1719
-
-
Floudas, D.1
Binder, M.2
Riley, R.3
Barry, K.4
Blanchette, R.A.5
Henrissat, B.6
-
5
-
-
78650198931
-
Fungal secondary metabolites - strategies to activate silent gene clusters
-
Brakhage AA, Schroeckh V. Fungal secondary metabolites - strategies to activate silent gene clusters. Fungal Genet Biol. 2011;48:15-22.
-
(2011)
Fungal Genet Biol
, vol.48
, pp. 15-22
-
-
Brakhage, A.A.1
Schroeckh, V.2
-
6
-
-
84891128670
-
Modern taxonomy of biotechnologically important Aspergillus and Penicillium species
-
Houbraken J, de Vries RP, Samson RA. Modern taxonomy of biotechnologically important Aspergillus and Penicillium species. Adv Appl Microbiol. 2014;86:199-249.
-
(2014)
Adv Appl Microbiol
, vol.86
, pp. 199-249
-
-
Houbraken, J.1
Vries, R.P.2
Samson, R.A.3
-
7
-
-
79952741082
-
The fungi: 1, 2, 3 ... 5.1 million species?
-
Blackwell M. The fungi: 1, 2, 3 ... 5.1 million species? Am J Bot. 2011;98:426-38.
-
(2011)
Am J Bot
, vol.98
, pp. 426-438
-
-
Blackwell, M.1
-
8
-
-
84890285092
-
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
-
Tisserant E, Malbreil M, Kuo A, Kohler A, Symeonidi A, Balestrini R, et al. Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. Proc Natl Acad Sci. 2013;110(50):20117-22.
-
(2013)
Proc Natl Acad Sci
, vol.110
, Issue.50
, pp. 20117-20122
-
-
Tisserant, E.1
Malbreil, M.2
Kuo, A.3
Kohler, A.4
Symeonidi, A.5
Balestrini, R.6
-
9
-
-
79961171580
-
Pathogenomics of fungal plant parasites: what have we learnt about pathogenesis?
-
Schmidt SM, Panstruga R. Pathogenomics of fungal plant parasites: what have we learnt about pathogenesis? Curr Opin Plant Biol. 2011;14(4):392-9.
-
(2011)
Curr Opin Plant Biol
, vol.14
, Issue.4
, pp. 392-399
-
-
Schmidt, S.M.1
Panstruga, R.2
-
10
-
-
84875420788
-
Effector diversification within compartments of the Leptosphaeria maculans genome affected by repeat-induced point mutations
-
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by repeat-induced point mutations. Nat Commun. 2011;2:202.
-
(2011)
Nat Commun
, vol.2
, pp. 202
-
-
Rouxel, T.1
Grandaubert, J.2
Hane, J.K.3
Hoede, C.4
Wouw, A.P.5
Couloux, A.6
-
11
-
-
84878969764
-
Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts
-
Hacquard S, Kracher B, Maekawa T, Vernaldi S, Schulze-Lefert P, Themaat E. Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts. Proc Natl Acad Sci U S A. 2013;110(24):E2219-28.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.24
, pp. E2219-E2228
-
-
Hacquard, S.1
Kracher, B.2
Maekawa, T.3
Vernaldi, S.4
Schulze-Lefert, P.5
Themaat, E.6
-
12
-
-
84879173675
-
The evolution and pathogenic mechanisms of the rice sheath blight pathogen
-
Zheng A, Lin R, Zhang D, Qin P, Xu L, Ai P, et al. The evolution and pathogenic mechanisms of the rice sheath blight pathogen. Nat Commun. 2013;4:1424.
-
(2013)
Nat Commun
, vol.4
, pp. 1424
-
-
Zheng, A.1
Lin, R.2
Zhang, D.3
Qin, P.4
Xu, L.5
Ai, P.6
-
13
-
-
84892497304
-
Cells in cells: morphogenetic and metabolic strategies conditioning rice infection by the blast fungus Magnaporthe oryzae
-
Fernandez J, Wilson RA. Cells in cells: morphogenetic and metabolic strategies conditioning rice infection by the blast fungus Magnaporthe oryzae. Protoplasma. 2014;251:37-47.
-
(2014)
Protoplasma
, vol.251
, pp. 37-47
-
-
Fernandez, J.1
Wilson, R.A.2
-
14
-
-
84883464941
-
Immunodetection of fungal and oomycete pathogens: established and emerging threats to human health, animal welfare and global food security
-
Thornton CR, Wills OE. Immunodetection of fungal and oomycete pathogens: established and emerging threats to human health, animal welfare and global food security. Crit Rev Microbiol. 2013:1-25: doi:10.3190/1040841X.2103.78895.
-
(2013)
Crit Rev Microbiol
, pp. 1-25
-
-
Thornton, C.R.1
Wills, O.E.2
-
15
-
-
67650998748
-
Pathogenesis of Aspergillus fumigatus in Invasive Aspergillosis
-
Dagenais TRT, Keller NP. Pathogenesis of Aspergillus fumigatus in Invasive Aspergillosis. Clin Microbiol Rev. 2009;22(3):447-65.
-
(2009)
Clin Microbiol Rev
, vol.22
, Issue.3
, pp. 447-465
-
-
Dagenais, T.R.T.1
Keller, N.P.2
-
16
-
-
84865591846
-
A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
-
Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, et al. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics. 2012;13:341.
-
(2012)
BMC Genomics
, vol.13
, pp. 341
-
-
Quail, M.A.1
Smith, M.2
Coupland, P.3
Otto, T.D.4
Harris, S.R.5
Connor, T.R.6
-
17
-
-
79953685152
-
The impact of next-generation sequencing on genomics
-
Zhang J, Chiodini R, Badr A, Zhang G. The impact of next-generation sequencing on genomics. J Genet Genomics. 2011;38(3):95-109.
-
(2011)
J Genet Genomics
, vol.38
, Issue.3
, pp. 95-109
-
-
Zhang, J.1
Chiodini, R.2
Badr, A.3
Zhang, G.4
-
19
-
-
24944534978
-
Real-time PCR for mRNA quantitation
-
Wong ML, Medrano JF. Real-time PCR for mRNA quantitation. BioTechniques. 2005;39(1):75-85.
-
(2005)
BioTechniques
, vol.39
, Issue.1
, pp. 75-85
-
-
Wong, M.L.1
Medrano, J.F.2
-
20
-
-
77649235913
-
How to do successful gene expression analysis using real-time PCR
-
Derveaux S, Vandesompele J, Hellemans J. How to do successful gene expression analysis using real-time PCR. Methods. 2010;50(4):227-30.
-
(2010)
Methods
, vol.50
, Issue.4
, pp. 227-230
-
-
Derveaux, S.1
Vandesompele, J.2
Hellemans, J.3
-
21
-
-
79961014660
-
Standardisation and reporting for nucleic acid quantification
-
Huggett J, Bustin SA. Standardisation and reporting for nucleic acid quantification. Accreditation Qual Assur. 2011;16:399-405.
-
(2011)
Accreditation Qual Assur
, vol.16
, pp. 399-405
-
-
Huggett, J.1
Bustin, S.A.2
-
22
-
-
64149097786
-
The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments
-
Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, Kubista M, et al. The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem. 2009;55(4):611-22.
-
(2009)
Clin Chem
, vol.55
, Issue.4
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.A.3
Hellemans, J.4
Huggett, J.5
Kubista, M.6
-
23
-
-
21344471138
-
Real-time RT-PCR normalisation; strategies and considerations
-
Huggett J, Dheda K, Bustin S, Zumla A. Real-time RT-PCR normalisation; strategies and considerations. Genes Immun. 2005;6:279-84.
-
(2005)
Genes Immun
, vol.6
, pp. 279-284
-
-
Huggett, J.1
Dheda, K.2
Bustin, S.3
Zumla, A.4
-
24
-
-
33847335427
-
Universal external RNA controls for microbial gene expression analysis using microarray and qRT-PCR
-
Liu ZL, Slininger PJ. Universal external RNA controls for microbial gene expression analysis using microarray and qRT-PCR. J Microbiol Methods. 2007;68(3):486-96.
-
(2007)
J Microbiol Methods
, vol.68
, Issue.3
, pp. 486-496
-
-
Liu, Z.L.1
Slininger, P.J.2
-
25
-
-
78549241650
-
Evaluation of external RNA controls for the standardisation of gene expression biomarker measurements
-
Devonshire AS, Elaswarapu R, Foy CA. Evaluation of external RNA controls for the standardisation of gene expression biomarker measurements. BMC Genomics. 2010;11:662.
-
(2010)
BMC Genomics
, vol.11
, pp. 662
-
-
Devonshire, A.S.1
Elaswarapu, R.2
Foy, C.A.3
-
26
-
-
27144548491
-
The external RNA controls consortium: a progress report
-
Baker SC, Bauer SR, Beyer RP, Brenton JD, Bromley B, Burrill J, et al. The external RNA controls consortium: a progress report. Nat Methods. 2005;2(10):731-4.
-
(2005)
Nat Methods
, vol.2
, Issue.10
, pp. 731-734
-
-
Baker, S.C.1
Bauer, S.R.2
Beyer, R.P.3
Brenton, J.D.4
Bromley, B.5
Burrill, J.6
-
27
-
-
33746660211
-
EQUAL-quant: an international external quality assessment scheme for real-time PCR
-
Ramsden SC, Daly S, Geilenkeuser W-J, Duncan G, Hermitte F, Marubini E, et al. EQUAL-quant: an international external quality assessment scheme for real-time PCR. Clin Chem. 2006;52:1584-91.
-
(2006)
Clin Chem
, vol.52
, pp. 1584-1591
-
-
Ramsden, S.C.1
Daly, S.2
Geilenkeuser, W.-J.3
Duncan, G.4
Hermitte, F.5
Marubini, E.6
-
28
-
-
67649444944
-
Reference gene validation software for improved normalization
-
Logan J, Edwards K, Saunders N, editors. Norfolk, UK: Caister Academic Press
-
Vandesompele J, Kubista M, Pfaffl MW. Reference gene validation software for improved normalization. In: Logan J, Edwards K, Saunders N, editors. Real-time PCR: current technology and applications, vol. 47. Norfolk, UK: Caister Academic Press; 2009. p. 64.
-
(2009)
Real-time PCR: current technology and applications
, vol.47
, pp. 64
-
-
Vandesompele, J.1
Kubista, M.2
Pfaffl, M.W.3
-
29
-
-
67349112357
-
A decade of improvements in quantification of gene expression and internal standard selection
-
Thellin O, ElMoualij B, Heinen E, Zorzi W. A decade of improvements in quantification of gene expression and internal standard selection. Biotechnol Adv. 2009;27(4):323-33.
-
(2009)
Biotechnol Adv
, vol.27
, Issue.4
, pp. 323-333
-
-
Thellin, O.1
ElMoualij, B.2
Heinen, E.3
Zorzi, W.4
-
30
-
-
79953095540
-
RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization
-
Hruz T, Wyss M, Docquier M, Pfaffl MW, Masanetz S, Borghi L, et al. RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization. BMC Genomics. 2011;12:156.
-
(2011)
BMC Genomics
, vol.12
, pp. 156
-
-
Hruz, T.1
Wyss, M.2
Docquier, M.3
Pfaffl, M.W.4
Masanetz, S.5
Borghi, L.6
-
31
-
-
84886734511
-
Reference genes in real-time PCR
-
Kozera B, Rapacz M. Reference genes in real-time PCR. J Appl Genet. 2013;54:391-406.
-
(2013)
J Appl Genet
, vol.54
, pp. 391-406
-
-
Kozera, B.1
Rapacz, M.2
-
32
-
-
3442876969
-
Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
-
Andersen CL, Jensen JL, Ørntoft TF. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004;64:5245-50.
-
(2004)
Cancer Res
, vol.64
, pp. 5245-5250
-
-
Andersen, C.L.1
Jensen, J.L.2
Ørntoft, T.F.3
-
33
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
RESEARCH0034
-
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3:RESEARCH0034.
-
(2002)
Genome Biol
, pp. 3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
-
34
-
-
1842483281
-
Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
-
Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations. Biotechnol Lett. 2004;26:509-15.
-
(2004)
Biotechnol Lett
, vol.26
, pp. 509-515
-
-
Pfaffl, M.W.1
Tichopad, A.2
Prgomet, C.3
Neuvians, T.P.4
-
35
-
-
35748985566
-
Selection of reference genes for normalisation of specific gene quantification data of Aspergillus niger
-
Bohle K, Jungebloud A, Göcke Y, Dalpiaz A, Cordes C, Horn H, et al. Selection of reference genes for normalisation of specific gene quantification data of Aspergillus niger. J Biotechnol. 2007;132(4):353-8.
-
(2007)
J Biotechnol
, vol.132
, Issue.4
, pp. 353-358
-
-
Bohle, K.1
Jungebloud, A.2
Göcke, Y.3
Dalpiaz, A.4
Cordes, C.5
Horn, H.6
-
36
-
-
71349086576
-
An accurate normalization strategy for RT-qPCR in Hypocrea jecorina (Trichoderma reesei)
-
Steiger MG, Mach RL, Mach-Aigner AR. An accurate normalization strategy for RT-qPCR in Hypocrea jecorina (Trichoderma reesei). J Biotechnol. 2010;145:30-7.
-
(2010)
J Biotechnol
, vol.145
, pp. 30-37
-
-
Steiger, M.G.1
Mach, R.L.2
Mach-Aigner, A.R.3
-
37
-
-
33646365324
-
Selection of internal control genes for real-time quantitative RT-PCR assays in the oomycete plant pathogen Phytophthora parasitica
-
Yan H-Z, Liou R-F. Selection of internal control genes for real-time quantitative RT-PCR assays in the oomycete plant pathogen Phytophthora parasitica. Fungal Genet Biol. 2006;43:430-8.
-
(2006)
Fungal Genet Biol
, vol.43
, pp. 430-438
-
-
Yan, H.-Z.1
Liou, R.-F.2
-
38
-
-
80052029845
-
Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust
-
Vieira A, Talhinhas P, Loureiro A, Duplessis S, Fernandez D, Silva M, et al. Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust. Fungal Biol. 2011;115:891-901.
-
(2011)
Fungal Biol
, vol.115
, pp. 891-901
-
-
Vieira, A.1
Talhinhas, P.2
Loureiro, A.3
Duplessis, S.4
Fernandez, D.5
Silva, M.6
-
39
-
-
84856300307
-
Selection of optimal reference genes for expression analysis in the entomopathogenic fungus Beauveria bassiana during development, under changing nutrient conditions, and after exposure to abiotic stresses
-
Zhou Y-H, Zhang Y-J, Luo Z-B, Fan Y-H, Tang G-R, Liu L-J, et al. Selection of optimal reference genes for expression analysis in the entomopathogenic fungus Beauveria bassiana during development, under changing nutrient conditions, and after exposure to abiotic stresses. Appl Microbiol Biotechnol. 2012;93:679-85.
-
(2012)
Appl Microbiol Biotechnol
, vol.93
, pp. 679-685
-
-
Zhou, Y.-H.1
Zhang, Y.-J.2
Luo, Z.-B.3
Fan, Y.-H.4
Tang, G.-R.5
Liu, L.-J.6
-
40
-
-
79151485799
-
Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves
-
Hacquard S, Veneault-Fourrey C, Delaruelle C, Frey P, Martin F, Duplessis S. Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves. Physiol Mol Plant Pathol. 2011;75:106-12.
-
(2011)
Physiol Mol Plant Pathol
, vol.75
, pp. 106-112
-
-
Hacquard, S.1
Veneault-Fourrey, C.2
Delaruelle, C.3
Frey, P.4
Martin, F.5
Duplessis, S.6
-
41
-
-
84879421026
-
Evaluation of potential reference genes for use in gene expression studies in the conifer pathogen (Heterobasidion annosum)
-
Raffaello T, Asiegbu FO. Evaluation of potential reference genes for use in gene expression studies in the conifer pathogen (Heterobasidion annosum). Mol Biol Rep. 2013;40(7):4605-11.
-
(2013)
Mol Biol Rep
, vol.40
, Issue.7
, pp. 4605-4611
-
-
Raffaello, T.1
Asiegbu, F.O.2
-
42
-
-
33750002928
-
Expression of genes involved in germination, conidiogenesis and pathogenesis in Metarhizium anisopliae using quantitative real-time RT-PCR
-
Fang W, Bidochka MJ. Expression of genes involved in germination, conidiogenesis and pathogenesis in Metarhizium anisopliae using quantitative real-time RT-PCR. Mycol Res. 2006;110(Pt 10):1165-71.
-
(2006)
Mycol Res
, vol.110
, pp. 1165-1171
-
-
Fang, W.1
Bidochka, M.J.2
-
43
-
-
84905092470
-
Validation of reference genes in Penicillium echinulatum to enable gene expression study using real-time quantitative RT-PCR
-
Zampieri D, Nora LC, Basso V, Camassola M, Dillon AJP. Validation of reference genes in Penicillium echinulatum to enable gene expression study using real-time quantitative RT-PCR. Curr Genet. 2014;60(3):231-6.
-
(2014)
Curr Genet
, vol.60
, Issue.3
, pp. 231-236
-
-
Zampieri, D.1
Nora, L.C.2
Basso, V.3
Camassola, M.4
Dillon, A.J.P.5
-
44
-
-
66249132011
-
Mitogen-activated protein kinase hog1 in the entomopathogenic fungus Beauveria bassiana regulates environmental stress responses and virulence to insects
-
Zhang Y, Zhao J, Fang W, Zhang J, Luo Z, Zhang M, et al. Mitogen-activated protein kinase hog1 in the entomopathogenic fungus Beauveria bassiana regulates environmental stress responses and virulence to insects. Appl Environ Microbiol. 2009;75:3787-95.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 3787-3795
-
-
Zhang, Y.1
Zhao, J.2
Fang, W.3
Zhang, J.4
Luo, Z.5
Zhang, M.6
-
45
-
-
84889076938
-
Selection of reference genes for quantitative real-time PCR normalization in Puccinia Striiformis f.sp. tritici
-
Huang Xueling NA FU, Feng Hao NA FU, Kang Zhensheng FU, Kang Zhensheng NA. Selection of reference genes for quantitative real-time PCR normalization in Puccinia Striiformis f.sp. tritici. J Agric Biotechnol. 2012;20(2):181-7.
-
(2012)
J Agric Biotechnol
, vol.20
, Issue.2
, pp. 181-187
-
-
Huang Xueling NA, F.U.1
Feng Hao NA, F.U.2
Kang Zhensheng, F.U.3
Kang Zhensheng, N.A.4
-
46
-
-
84863635295
-
Evaluation of potential reference genes for quantitative RT-PCR analysis in Fusarium graminearum under different culture conditions
-
Kim HK, Yun SH. Evaluation of potential reference genes for quantitative RT-PCR analysis in Fusarium graminearum under different culture conditions. Plant Pathol J. 2011;27:301-9.
-
(2011)
Plant Pathol J
, vol.27
, pp. 301-309
-
-
Kim, H.K.1
Yun, S.H.2
-
47
-
-
84860196602
-
Correction of RT-qPCR data for genomic DNA-derived signals with ValidPrime
-
Laurell H, Iacovoni JS, Abot A, Svec D, Maoret J-J, Arnal J-F, et al. Correction of RT-qPCR data for genomic DNA-derived signals with ValidPrime. Nucleic Acids Res. 2012;40:e51.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. e51
-
-
Laurell, H.1
Iacovoni, J.S.2
Abot, A.3
Svec, D.4
Maoret, J.-J.5
Arnal, J.-F.6
-
48
-
-
84874271270
-
NCBI GEO: archive for functional genomics data sets-update
-
Database issue
-
Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, et al. NCBI GEO: archive for functional genomics data sets-update. Nucleic Acids Res. 2013;41(Database issue):D991-5.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D991-D995
-
-
Barrett, T.1
Wilhite, S.E.2
Ledoux, P.3
Evangelista, C.4
Kim, I.F.5
Tomashevsky, M.6
-
49
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 2002;30:207-10.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
50
-
-
84881161294
-
Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger
-
Ries L, Pullan ST, Delmas S, Malla S, Blythe MJ, Archer DB. Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger. BMC Genomics. 2013;14:541.
-
(2013)
BMC Genomics
, vol.14
, pp. 541
-
-
Ries, L.1
Pullan, S.T.2
Delmas, S.3
Malla, S.4
Blythe, M.J.5
Archer, D.B.6
-
51
-
-
84866145069
-
Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to Lignocellulose using RNA sequencing
-
Delmas S, Pullan ST, Gaddipati S, Kokolski M, Malla S, Blythe MJ, et al. Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to Lignocellulose using RNA sequencing. PLoS Genet. 2012;8:e1002875.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002875
-
-
Delmas, S.1
Pullan, S.T.2
Gaddipati, S.3
Kokolski, M.4
Malla, S.5
Blythe, M.J.6
-
52
-
-
84879499963
-
Transcriptomic profiling of Aspergillus flavus in response to 5-azacytidine
-
Lin J-Q, Zhao X-X, Zhi Q-Q, Zhao M, He Z-M. Transcriptomic profiling of Aspergillus flavus in response to 5-azacytidine. Fungal Genet Biol. 2013;56:78-86.
-
(2013)
Fungal Genet Biol
, vol.56
, pp. 78-86
-
-
Lin, J.-Q.1
Zhao, X.-X.2
Zhi, Q.-Q.3
Zhao, M.4
He, Z.-M.5
-
53
-
-
80051663373
-
Tight control of mycotoxin biosynthesis gene expression in Aspergillus flavus by temperature as revealed by RNA-Seq
-
Yu J, Fedorova ND, Montalbano BG, Bhatnagar D, Cleveland TE, Bennett JW, et al. Tight control of mycotoxin biosynthesis gene expression in Aspergillus flavus by temperature as revealed by RNA-Seq. FEMS Microbiol Lett. 2011;322(2):145-9.
-
(2011)
FEMS Microbiol Lett
, vol.322
, Issue.2
, pp. 145-149
-
-
Yu, J.1
Fedorova, N.D.2
Montalbano, B.G.3
Bhatnagar, D.4
Cleveland, T.E.5
Bennett, J.W.6
-
54
-
-
77956107299
-
Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing
-
Wang B, Guo G, Wang C, Lin Y, Wang X, Zhao M, et al. Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing. Nucleic Acids Res. 2010;38(15):5075-87.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.15
, pp. 5075-5087
-
-
Wang, B.1
Guo, G.2
Wang, C.3
Lin, Y.4
Wang, X.5
Zhao, M.6
-
55
-
-
84893450996
-
Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa
-
Coradetti ST, Xiong Y, Glass NL. Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa. MicrobiologyOpen. 2013;2(4):595-609.
-
(2013)
MicrobiologyOpen
, vol.2
, Issue.4
, pp. 595-609
-
-
Coradetti, S.T.1
Xiong, Y.2
Glass, N.L.3
-
56
-
-
84865693932
-
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
-
O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF, et al. Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses. Nat Genet. 2012;44:1060-5.
-
(2012)
Nat Genet
, vol.44
, pp. 1060-1065
-
-
O'Connell, R.J.1
Thon, M.R.2
Hacquard, S.3
Amyotte, S.G.4
Kleemann, J.5
Torres, M.F.6
-
57
-
-
84878791784
-
Gene expression analysis of copper tolerance and wood decay in the brown rot fungus Fibroporia radiculosa
-
Tang JD, Parker LA, Perkins AD, Sonstegard TS, Schroeder SG, Nicholas DD, et al. Gene expression analysis of copper tolerance and wood decay in the brown rot fungus Fibroporia radiculosa. Appl Environ Microbiol. 2013;79:1523-33.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 1523-1533
-
-
Tang, J.D.1
Parker, L.A.2
Perkins, A.D.3
Sonstegard, T.S.4
Schroeder, S.G.5
Nicholas, D.D.6
-
58
-
-
84860911279
-
Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae
-
Soanes DM, Chakrabarti A, Paszkiewicz KH, Dawe AL, Talbot NJ. Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae. PLoS Pathog. 2012;8:e1002514.
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002514
-
-
Soanes, D.M.1
Chakrabarti, A.2
Paszkiewicz, K.H.3
Dawe, A.L.4
Talbot, N.J.5
-
59
-
-
84860805742
-
Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi
-
Coradetti ST, Craig JP, Xiong Y, Shock T, Tian C, Glass NL. Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi. Proc Natl Acad Sci U S A. 2012;109:7397-402.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 7397-7402
-
-
Coradetti, S.T.1
Craig, J.P.2
Xiong, Y.3
Shock, T.4
Tian, C.5
Glass, N.L.6
-
60
-
-
84859972859
-
Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins
-
Znameroski EA, Coradetti ST, Roche CM, Tsai JC, Iavarone AT, Cate JHD, et al. Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins. Proc Natl Acad Sci U S A. 2012;109(16):6012-7.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.16
, pp. 6012-6017
-
-
Znameroski, E.A.1
Coradetti, S.T.2
Roche, C.M.3
Tsai, J.C.4
Iavarone, A.T.5
Cate, J.H.D.6
-
61
-
-
84884682760
-
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution
-
Traeger S, Altegoer F, Freitag M, Gabaldon T, Kempken F, Kumar A, et al. The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution. PLoS Genet. 2013;9:e1003820.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003820
-
-
Traeger, S.1
Altegoer, F.2
Freitag, M.3
Gabaldon, T.4
Kempken, F.5
Kumar, A.6
-
62
-
-
84866637856
-
Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development
-
Teichert I, Wolff G, Kück U, Nowrousian M. Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development. BMC Genomics. 2012;13:511.
-
(2012)
BMC Genomics
, vol.13
, pp. 511
-
-
Teichert, I.1
Wolff, G.2
Kück, U.3
Nowrousian, M.4
-
63
-
-
84863636068
-
Principles of carbon catabolite repression in the rice blast fungus: Tps1, Nmr1-3, and a MATE-family pump regulate glucose metabolism during infection
-
Fernandez J, Wright JD, Hartline D, Quispe CF, Madayiputhiya N, Wilson RA. Principles of carbon catabolite repression in the rice blast fungus: Tps1, Nmr1-3, and a MATE-family pump regulate glucose metabolism during infection. PLoS Genet. 2012;8:e1002673.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002673
-
-
Fernandez, J.1
Wright, J.D.2
Hartline, D.3
Quispe, C.F.4
Madayiputhiya, N.5
Wilson, R.A.6
-
65
-
-
84883006955
-
Influence of temperature and substrate conditions on the omt-1 gene expression of Aspergillus parasiticus in relation to its aflatoxin production
-
Lozano-Ojalvo D, Rodríguez A, Bernáldez V, Córdoba JJ, Rodríguez M. Influence of temperature and substrate conditions on the omt-1 gene expression of Aspergillus parasiticus in relation to its aflatoxin production. Int J Food Microbiol. 2013;166:263-9.
-
(2013)
Int J Food Microbiol
, vol.166
, pp. 263-269
-
-
Lozano-Ojalvo, D.1
Rodríguez, A.2
Bernáldez, V.3
Córdoba, J.J.4
Rodríguez, M.5
-
66
-
-
77952242009
-
Analysis of wide-domain transcriptional regulation in solid-state cultures of Aspergillus oryzae
-
McKelvey SM, Murphy RA. Analysis of wide-domain transcriptional regulation in solid-state cultures of Aspergillus oryzae. J Ind Microbiol Biotechnol. 2010;37:455-69.
-
(2010)
J Ind Microbiol Biotechnol
, vol.37
, pp. 455-469
-
-
McKelvey, S.M.1
Murphy, R.A.2
-
67
-
-
80052809216
-
Molecular detection and characterisation of fungal heat shock protein 60
-
Raggam RB, Salzer HJF, Marth E, Heiling B, Paulitsch AH, Buzina W. Molecular detection and characterisation of fungal heat shock protein 60. Mycoses. 2011;54:e394-9.
-
(2011)
Mycoses
, vol.54
, pp. e394-e399
-
-
Raggam, R.B.1
Salzer, H.J.F.2
Marth, E.3
Heiling, B.4
Paulitsch, A.H.5
Buzina, W.6
-
68
-
-
84875926549
-
Transcriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing
-
Novodvorska M, Hayer K, Pullan ST, Wilson R, Blythe MJ, Stam H, et al. Transcriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing. BMC Genomics. 2013;14:246.
-
(2013)
BMC Genomics
, vol.14
, pp. 246
-
-
Novodvorska, M.1
Hayer, K.2
Pullan, S.T.3
Wilson, R.4
Blythe, M.J.5
Stam, H.6
-
69
-
-
52949095426
-
Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia
-
Lamarre C, Sokol S, Debeaupuis J-P, Henry C, Lacroix C, Glaser P, et al. Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia. BMC Genomics. 2008;9:417.
-
(2008)
BMC Genomics
, vol.9
, pp. 417
-
-
Lamarre, C.1
Sokol, S.2
Debeaupuis, J.-P.3
Henry, C.4
Lacroix, C.5
Glaser, P.6
-
70
-
-
84876794343
-
Germination of conidia of Aspergillus niger is accompanied by major changes in RNA profiles
-
Van Leeuwen MR, Krijgsheld P, Bleichrodt R, Menke H, Stam H, Stark J, et al. Germination of conidia of Aspergillus niger is accompanied by major changes in RNA profiles. Stud Mycol. 2013;74:59-70.
-
(2013)
Stud Mycol
, vol.74
, pp. 59-70
-
-
Van Leeuwen, M.R.1
Krijgsheld, P.2
Bleichrodt, R.3
Menke, H.4
Stam, H.5
Stark, J.6
-
71
-
-
77955654728
-
Characterization of the family GH54 alpha-L-arabinofuranosidases in Penicillium funiculosum, including a novel protein bearing a cellulose-binding domain
-
Guais O, Tourrasse O, Dourdoigne M, Parrou JL, Francois JM. Characterization of the family GH54 alpha-L-arabinofuranosidases in Penicillium funiculosum, including a novel protein bearing a cellulose-binding domain. Appl Microbiol Biotechnol. 2010;87:1007-21.
-
(2010)
Appl Microbiol Biotechnol
, vol.87
, pp. 1007-1021
-
-
Guais, O.1
Tourrasse, O.2
Dourdoigne, M.3
Parrou, J.L.4
Francois, J.M.5
-
72
-
-
33750295976
-
Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR
-
Silver N, Best S, Jiang J, Thein SL. Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR. BMC Mol Biol. 2006;7:33.
-
(2006)
BMC Mol Biol
, vol.7
, pp. 33
-
-
Silver, N.1
Best, S.2
Jiang, J.3
Thein, S.L.4
-
73
-
-
84868032308
-
RNA quality assessment: a view from plant qPCR studies
-
Die JV, Román B. RNA quality assessment: a view from plant qPCR studies. J Exp Bot. 2012;63:6069-77.
-
(2012)
J Exp Bot
, vol.63
, pp. 6069-6077
-
-
Die, J.V.1
Román, B.2
-
74
-
-
79955999748
-
Measurable impact of RNA quality on gene expression results from quantitative PCR
-
Vermeulen J, De Preter K, Lefever S, Nuytens J, De Vloed F, Derveaux S, et al. Measurable impact of RNA quality on gene expression results from quantitative PCR. Nucleic Acids Res. 2011;39:e63.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. e63
-
-
Vermeulen, J.1
Preter, K.2
Lefever, S.3
Nuytens, J.4
Vloed, F.5
Derveaux, S.6
-
75
-
-
84903616761
-
Four GH11 xylanases from the xylanolytic fungus Talaromyces versatilis act differently on (arabino)xylans
-
Lafond M, Guais O, Maestracci M, Bonnin E, Giardina T. Four GH11 xylanases from the xylanolytic fungus Talaromyces versatilis act differently on (arabino)xylans. Appl Microbiol Biotechnol. 2014;98(14):6339-52.
-
(2014)
Appl Microbiol Biotechnol
, vol.98
, Issue.14
, pp. 6339-6352
-
-
Lafond, M.1
Guais, O.2
Maestracci, M.3
Bonnin, E.4
Giardina, T.5
-
76
-
-
70549086797
-
Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae
-
Teste M-A, Duquenne M, François JM, Parrou J-L. Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae. BMC Mol Biol. 2009;10:99.
-
(2009)
BMC Mol Biol
, vol.10
, pp. 99
-
-
Teste, M.-A.1
Duquenne, M.2
François, J.M.3
Parrou, J.-L.4
-
77
-
-
33847321126
-
A combined strategy of "in silico" transcriptome analysis and web search engine optimization allows an agile identification of reference genes suitable for normalization in gene expression studies
-
Faccioli P, Ciceri GP, Provero P, Stanca AM, Morcia C, Terzi V. A combined strategy of "in silico" transcriptome analysis and web search engine optimization allows an agile identification of reference genes suitable for normalization in gene expression studies. Plant Mol Biol. 2007;63(5):679-88.
-
(2007)
Plant Mol Biol
, vol.63
, Issue.5
, pp. 679-688
-
-
Faccioli, P.1
Ciceri, G.P.2
Provero, P.3
Stanca, A.M.4
Morcia, C.5
Terzi, V.6
-
78
-
-
27644563899
-
The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization
-
Dheda K, Huggett JF, Chang JS, Kim LU, Bustin SA, Johnson MA, et al. The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization. Anal Biochem. 2005;344:141-3.
-
(2005)
Anal Biochem
, vol.344
, pp. 141-143
-
-
Dheda, K.1
Huggett, J.F.2
Chang, J.S.3
Kim, L.U.4
Bustin, S.A.5
Johnson, M.A.6
|