Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae

PLoS Pathogens

Volumn 8, Issue 2, 2012, Pages

  Soanes, Darren M ^a   Chakrabarti, Apratim ^a   Paszkiewicz, Konrad H ^a   Dawe, Angus L ^a,b   Talbot, Nicholas J ^a  

^a UNIVERSITY OF EXETER   (United Kingdom)

^b NEW MEXICO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MITOGEN ACTIVATED PROTEIN KINASE; PMK1 MITOGEN ACTIVATED PROTEIN KINASE; QUININE SULFATE; UNCLASSIFIED DRUG;

APPRESSORIUM; ARTICLE; AUTOPHAGY; CELL DIFFERENTIATION; FUNGAL GENOME; FUNGAL STRUCTURES; GENE EXPRESSION; HIGH THROUGHPUT SEQUENCING; LIPID METABOLISM; MAGNAPORTHE; MAGNAPORTHE ORYZAE; MELANOGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT DISEASE; RICE BLAST; RNA SEQUENCE;

ACETYL COENZYME A; AUTOPHAGY; FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; GENOME, FUNGAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HOST-PATHOGEN INTERACTIONS; LIPID METABOLISM; MAGNAPORTHE; MELANINS; MITOGEN-ACTIVATED PROTEIN KINASES; MUTATION; ORYZA SATIVA; PLANT DISEASES; PLANT LEAVES; SIGNAL TRANSDUCTION; SPORES, FUNGAL; TIME FACTORS;

FUNGI; MAGNAPORTHE GRISEA; MAGNAPORTHE ORYZAE;

EID: 84860911279     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1002514     Document Type: Article

References (60)

1. Wilson RA, Talbot NJ, (2009) Under pressure: investigating the biology of plant infection by Magnaporthe oryzae. Nat Rev Microbiol 7: 185-195.
2. Skamnioti PGS, (2009) Against the grain: safeguarding rice from rice blast disease. Trends Biotechnol 27: 141-150.
3. Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, et al. (2005) The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434: 980-986.
4. Tucker SL, Talbot NJ, (2001) Surface attachment and pre-penetration stage development by plant pathogenic fungi. Annu Rev Phytopathol 39: 385-417.
5. de Jong JC, McCormack BJ, Smirnoff N, Talbot NJ, (1997) Glycerol generates turgor in rice blast. Nature 389: 244-244.
6. Saunders DG, Aves SJ, Talbot NJ, (2010) Cell cycle-mediated regulation of plant infection by the rice blast fungus. Plant Cell 22: 497-507.
7. Veneault-Fourrey C, Barooah M, Egan M, Wakley G, Talbot NJ, (2006) Autophagic fungal cell death is necessary for infection by the rice blast fungus. Science 312: 580-583.
8. Saunders DG, Dagdas YF, Talbot NJ, (2010) Spatial uncoupling of mitosis and cytokinesis during appressorium-mediated plant infection by the rice blast fungus Magnaporthe oryzae. Plant Cell 22: 2417-2428.
9. Kershaw MJ, Talbot NJ, (2009) Genome-wide functional analysis reveals that infection-associated fungal autophagy is necessary for rice blast disease. Proc Natl Acad Sci U S A 106: 15967-15972.
10. Adachi K, Hamer JE, (1998) Divergent cAMP signaling pathways regulate growth and pathogenesis in the rice blast fungus Magnaporthe grisea. Plant Cell 10: 1361-1374.
11. Xu JR, Hamer JE, (1996) MAP kinase and cAMP signaling regulate infection structure formation and pathogenic growth in the rice blast fungus Magnaporthe grisea. Genes Dev 10: 2696-2706.
12. Zhao X, Kim Y, Park G, Xu JR, (2005) A mitogen-activated protein kinase cascade regulating infection-related morphogenesis in Magnaporthe grisea. Plant Cell 17: 1317-1329.
13. Liu W ZX, Li G, Li L, Kong L, Wang C, et al. (2011) Multiple plant surface signals are sensed by different mechanisms in the rice blast fungus for appressorium formation. PLoS Pathog 7: e1001261.
14. Thines E, Weber RW, Talbot NJ, (2000) MAP kinase and protein kinase A-dependent mobilization of triacylglycerol and glycogen during appressorium turgor generation by Magnaporthe grisea. Plant Cell 12: 1703-1718.
15. Wang ZY, Thornton CR, Kershaw MJ, Debao L, Talbot NJ, (2003) The glyoxylate cycle is required for temporal regulation of virulence by the plant pathogenic fungus Magnaporthe grisea. Mol Microbiol 47: 1601-1612.
16. Wang ZY, Soanes DM, Kershaw MJ, Talbot NJ, (2007) Functional analysis of lipid metabolism in Magnaporthe grisea reveals a requirement for peroxisomal fatty acid beta-oxidation during appressorium-mediated plant infection. Mol Plant Microbe Interact 20: 475-491.
17. Bhambra GK, Wang ZY, Soanes DM, Wakley GE, Talbot NJ, (2006) Peroxisomal carnitine acetyl transferase is required for elaboration of penetration hyphae during plant infection by Magnaporthe grisea. Mol Microbiol 61: 46-60.
18. Ramos-Pamplona M, Naqvi NI, (2006) Host invasion during rice-blast disease requires carnitine-dependent transport of peroxisomal acetyl-CoA. Mol Microbiol 61: 61-75.
19. Wilson RA, Talbot NJ, (2009) Fungal physiology - a future perspective. Microbiology 155: 3810-3815.
20. Donofrio NM, Oh Y, Lundy R, Pan H, Brown DE, et al. (2006) Global gene expression during nitrogen starvation in the rice blast fungus, Magnaporthe grisea. Fungal Genet Biol 43: 605-617.
21. Gowda M, Venu RC, Raghupathy MB, Nobuta K, Li H, et al. (2006) Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods. BMC Genomics 7: 310.
22. Oh Y, Donofrio N, Pan H, Coughlan S, Brown DE, et al. (2008) Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae. Genome Biol 9: R85.
23. Mathioni SM, Belo A, Rizzo CJ, Dean RA, Donofrio NM, (2011) Transcriptome profiling of the rice blast fungus during invasive plant infection and in vitro stresses. BMC Genomics 12: 49.
24. Talbot NJ, Ebbole DJ, Hamer JE, (1993) Identification and characterization of MPG1, a gene involved in pathogenicity from the rice blast fungus Magnaporthe grisea. Plant Cell 5: 1575-1590.
25. Talbot NJ, Kershaw MJ, Wakley GE, De Vries O, Wessels J, et al. (1996) MPG1 Encodes a Fungal Hydrophobin Involved in Surface Interactions during Infection-Related Development of Magnaporthe grisea. Plant Cell 8: 985-999.
26. Wang Z, Gerstein M, Snyder M, (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10: 57-63.
27. Matsumura H, Yoshida K, Luo S, Kimura E, Fujibe T, et al. (2010) High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing. PLoS One 5: e12010.
28. Soanes DM, Skinner W, Keon J, Hargreaves J, Talbot NJ, (2002) Genomics of phytopathogenic fungi and the development of bioinformatic resources. Mol Plant Microbe Interact 15: 421-427.
29. Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y, (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 18: 1509-1517.
30. Asmann YW, Klee EW, Thompson EA, Perez EA, Middha S, et al. (2009) 3′ tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer. BMC Genomics 10: 531.
31. Conesa A, Gotz S, (2008) Blast2GO: A comprehensive suite for functional analysis in plant genomics. Int J Plant Genomics 2008: 619832.
32. Guertin DA, Chang L, Irshad F, Gould KL, McCollum D, (2000) The role of the sid1p kinase and cdc14p in regulating the onset of cytokinesis in fission yeast. EMBO J 19: 1803-1815.
33. Osmani AH, Davies J, Oakley CE, Oakley BR, Osmani SA, (2003) TINA interacts with the NIMA kinase in Aspergillus nidulans and negatively regulates astral microtubules during metaphase arrest. Mol Biol Cell 14: 3169-3179.
34. Holt CL, May GS, (1996) An extragenic suppressor of the mitosis-defective bimD6 mutation of Aspergillus nidulans codes for a chromosome scaffold protein. Genetics 142: 777-787.
35. Hasslacher M, Ivessa AS, Paltauf F, Kohlwein SD, (1993) Acetyl-CoA carboxylase from yeast is an essential enzyme and is regulated by factors that control phospholipid metabolism. J Biol Chem 268: 10946-10952.
36. Chumley FG, Valent B, (1990) Genetic Analysis of Melanin-Deficient, Nonpathogenic Mutants of Magnaporthe grisea. Mol Plant Microbe Interact 3: 135-143.
37. Crawford JM, Dancy BC, Hill EA, Udwary DW, Townsend CA, (2006) Identification of a starter unit acyl-carrier protein transacylase domain in an iterative type I polyketide synthase. Proc Natl Acad Sci U S A 103: 16728-16733.
38. Bohnert HU, Fudal I, Dioh W, Tharreau D, Notteghem JL, et al. (2004) A putative polyketide synthase/peptide synthetase from Magnaporthe grisea signals pathogen attack to resistant rice. Plant Cell 16: 2499-2513.
39. Musrati RA, Kollarova M, Mernik N, Mikulasova D, (1998) Malate dehydrogenase: distribution, function and properties. Gen Physiol Biophys 17: 193-210.
40. Brock M, Fischer R, Linder D, Buckel W, (2000) Methylcitrate synthase from Aspergillus nidulans: implications for propionate as an antifungal agent. Mol Microbiol 35: 961-973.
41. Szewczyk E, Andrianopoulos A, Davis MA, Hynes MJ, (2001) A single gene produces mitochondrial, cytoplasmic, and peroxisomal NADP-dependent isocitrate dehydrogenase in Aspergillus nidulans. J Biol Chem 276: 37722-37729.
42. Geever RF, Huiet L, Baum JA, Tyler BM, Patel VB, et al. (1989) DNA sequence, organization and regulation of the qa gene cluster of Neurospora crassa. J Mol Biol 207: 15-34.
43. Lamb HK, Hawkins AR, Smith M, Harvey IJ, Brown J, et al. (1990) Spatial and biological characterisation of the complete quinic acid utilisation gene cluster in Aspergillus nidulans. Mol Gen Genet 223: 17-23.
44. Parker D, Beckmann M, Zubair H, Enot DP, Caracuel-Rios Z, et al. (2009) Metabolomic analysis reveals a common pattern of metabolic re-programming during invasion of three host plant species by Magnaporthe grisea. Plant J 59: 723-737.
45. Harwood CS, Parales RE, (1996) The beta-ketoadipate pathway and the biology of self-identity. Annu Rev Microbiol 50: 553-590.
46. Mazur P, Henzel WJ, Mattoo S, Kozarich JW, (1994) 3-Carboxy-cis,cis-muconate lactonizing enzyme from Neurospora crassa: an alternate cycloisomerase motif. J Bacteriol 176: 1718-1728.
47. Lubkowitz MA, Barnes D, Breslav M, Burchfield A, Naider F, et al. (1998) Schizosaccharomyces pombe isp4 encodes a transporter representing a novel family of oligopeptide transporters. Molecular Microbiol 28: 729-741.
48. Sun CB, Suresh A, Deng YZ, Naqvi NI, (2006) A multidrug resistance transporter in Magnaporthe is required for host penetration and for survival during oxidative stress. Plant Cell 18: 3686-3705.
49. Urban M, Bhargava T, Hamer JE, (1999) An ATP-driven efflux pump is a novel pathogenicity factor in rice blast disease. EMBO J 18: 512-521.
50. Gupta A, Chattoo BB, (2008) Functional analysis of a novel ABC transporter ABC4 from Magnaporthe grisea. FEMS Microbiol Lett 278: 22-28.
51. Kershaw MJ, Talbot NJ, (1998) Hydrophobins and repellents: proteins with fundamental roles in fungal morphogenesis. Fungal Genet Biol 23: 18-33.
52. Kim S, Ahn IP, Rho HS, Lee YH, (2005) MHP1, a Magnaporthe grisea hydrophobin gene, is required for fungal development and plant colonization. Mol Microbiol 57: 1224-1237.
53. Ohtaki S, Maeda H, Takahashi T, Yamagata Y, Hasegawa F, et al. (2006) Novel hydrophobic surface binding protein, HsbA, produced by Aspergillus oryzae. Appl Environ Microbiol 72: 2407-2413.
54. Xiang LX, He D, Dong WR, Zhang YW, Shao JZ, (2011) Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish. BMC Genomics 11: 472.
55. Djamei A, Schipper K, Rabe F, Ghosh A, Vincon V, et al. (2011) Metabolic priming by a secreted fungal effector. Nature 478: 395-398.
56. Leung H, Borromeo ES, Bernardo MA, Notteghem JL, (1988) Genetic analysis of virulence in the rice blast fungus Magnaporthe grisea. Phytopathology 78: 1227-1233.
57. Trapnell C, Pachter L, Salzberg SL, (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
58. Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28: 511-515.
59. Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
60. Anders S, Huber W, (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106.