-
1
-
-
0001133104
-
Ecology and pathogenicity of anastomosis and intraspecific groups of Rhizoctonia solani Kühn
-
Ogoshi, A. Ecology and pathogenicity of anastomosis and intraspecific groups of Rhizoctonia solani Kühn. Phytopathology 25, 125-143 (1987).
-
(1987)
Phytopathology
, vol.25
, pp. 125-143
-
-
Ogoshi, A.1
-
2
-
-
0030963774
-
Soybean disease loss estimates for the top 10 soybean producing countries in 1994
-
Wrather, J. A. et al. Soybean disease loss estimates for the top 10 soybean producing countries in 1994. Plant Dis. 81, 107-110 (1997).
-
(1997)
Plant Dis.
, vol.81
, pp. 107-110
-
-
Wrather, J.A.1
-
3
-
-
84886012614
-
Occurrence of banded leaf and sheath blight of maize in Jharkhand with reference to diversity in Rhizoctonia solani
-
Akhtar, J., Jha, V. K., Kumar, A. & Lal, H. C. Occurrence of banded leaf and sheath blight of maize in Jharkhand with reference to diversity in Rhizoctonia solani. Asian J. Agricul. Sci. 1, 32-35 (2009).
-
(2009)
Asian J. Agricul. Sci.
, vol.1
, pp. 32-35
-
-
Akhtar, J.1
Jha, V.K.2
Kumar, A.3
Lal, H.C.4
-
4
-
-
41149176380
-
Effects of cultivar resistance and single fungicide application on rice sheath blight, yield, and quality
-
Groth, D. E. Effects of cultivar resistance and single fungicide application on rice sheath blight, yield, and quality. Crop Prot. 27, 1125-1130 (2008).
-
(2008)
Crop Prot.
, vol.27
, pp. 1125-1130
-
-
Groth D., .E.1
-
5
-
-
70249109226
-
Genetic structure of populations of the rice-infecting pathogen Rhizoctonia solani AG-1 IA from China
-
Bernardes, J. et al. Genetic structure of populations of the rice-infecting pathogen Rhizoctonia solani AG-1 IA from China. Phytopathology 99, 1090-1099 (2009).
-
(2009)
Phytopathology
, vol.99
, pp. 1090-1099
-
-
Bernardes, J.1
-
6
-
-
75949093617
-
Divergence between sympatric rice- and maizeinfecting populations of Rhizoctonia solani AG-1 IA from Latin America
-
Gonzalez-Vera, A. D. et al. Divergence between sympatric rice- and maizeinfecting populations of Rhizoctonia solani AG-1 IA from Latin America. Phytopathology 100, 172-182 (2010).
-
(2010)
Phytopathology
, vol.100
, pp. 172-182
-
-
Gonzalez-Vera, A.D.1
-
7
-
-
49449114017
-
Genetic structure of populations of Rhizoctonia solani anastomosis group-1 IA from soybean in Brazil
-
Ciampi, M. B. et al. Genetic structure of populations of Rhizoctonia solani anastomosis group-1 IA from soybean in Brazil. Phytopathology 98, 932-941 (2008).
-
(2008)
Phytopathology
, vol.98
, pp. 932-941
-
-
Ciampi, M.B.1
-
8
-
-
0038893894
-
QTL analysis of sheath blight resistance in rice(Oryza sativa L.)
-
Kunihiro, Y. et al. QTL analysis of sheath blight resistance in rice (Oryza Sativa L.). Yi Chuan Xue Bao 29, 50-55 (2002). (Pubitemid 135684900)
-
(2002)
Acta Genetica Sinica
, vol.29
, Issue.1
, pp. 50-55
-
-
Kunihiro, Y.1
Qian, Q.2
Sato, H.3
Teng, S.4
Zeng, D.-L.5
Fujimoto, K.6
Zhu, L.-H.7
-
9
-
-
0036588120
-
Genetic structure of populations of Rhizoctonia solani AG-3 on potato in eastern North Carolina
-
Ceresini, P. C., Shew, H. D., Vilgalys, R. J., Rosewich, U. L. & Cubeta, M. A. Genetic structure of populations of Rhizoctonia solani AG-3 on potato in eastern North Carolina. Mycologia 94, 450-460 (2002). (Pubitemid 35180772)
-
(2002)
Mycologia
, vol.94
, Issue.3
, pp. 450-460
-
-
Ceresini, P.C.1
David Shew, H.2
Vilgalys, R.J.3
Liane Rosewich, U.4
Cubeta, M.A.5
-
10
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li, R. et al. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20, 265-272 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 265-272
-
-
Li, R.1
-
11
-
-
84959057192
-
Eugene: An Eukaryotic Gene Finder That Combines Several Sources of Evidence
-
Computational Biology
-
Schiex., T., Moisan, A. & Rouze, P. EuGene: an eukaryotic gene finder that combines several sources of evidence. Lect. Notes Comput. Sci. 2066, 111-125 (2001). (Pubitemid 33298834)
-
(2001)
Lecture Notes in Computer Science
, Issue.2066
, pp. 111-125
-
-
Schiex, T.1
Moisan, A.2
Rouze, P.3
-
12
-
-
77950637317
-
Evolutionary genomics revealed interkingdom distribution of Tcn1-like chromodomain-containing Gypsy LTR retrotransposons among fungi and plants
-
Novikova, O., Smyshlyaev, G. & Blinov, A. Evolutionary genomics revealed interkingdom distribution of Tcn1-like chromodomain-containing Gypsy LTR retrotransposons among fungi and plants. BMC Genom. 11, 231 (2010).
-
(2010)
BMC Genom.
, vol.11
, pp. 231
-
-
Novikova, O.1
Smyshlyaev, G.2
Blinov, A.3
-
13
-
-
0042027896
-
Structural dynamics of eukaryotic chromosome evolution
-
DOI 10.1126/science.1086132
-
Eichler, E. E. & Sankoff, D. Structural dynamics of eukaryotic chromosome evolution. Science 301, 793-797 (2003). (Pubitemid 36962611)
-
(2003)
Science
, vol.301
, Issue.5634
, pp. 793-797
-
-
Eichler, E.E.1
Sankoff, D.2
-
14
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
DOI 10.1016/S0168-9525(97)01181-5, PII S0168952597011815
-
Yoder, J. A., Walsh, C. P. & Bestor, T. H. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13, 335-340 (1997). (Pubitemid 27309911)
-
(1997)
Trends in Genetics
, vol.13
, Issue.8
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
-
15
-
-
20244366844
-
The genome sequence of the rice blast fungus Magnaporthe grisea
-
DOI 10.1038/nature03449
-
Dean, R. A. et al. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434, 980-986 (2005). (Pubitemid 40586040)
-
(2005)
Nature
, vol.434
, Issue.7036
, pp. 980-986
-
-
Dean, R.A.1
Talbot, N.J.2
Ebbole, D.J.3
Farman, M.L.4
Mitchell, T.K.5
Orbach, M.J.6
Thon, M.7
Kulkarni, R.8
Xu, J.-R.9
Pan, H.10
Read, N.D.11
Lee, Y.-I.12
Carbone, I.13
Brown, D.14
Yeon, Y.O.15
Donofrio, N.16
Jun, S.J.17
Soanes, D.M.18
Djonovic, S.19
Kolomlots, E.20
Rehmeyer, C.21
Li, W.22
Harding, M.23
Kim, S.24
Lebrun, M.-H.25
Bohnert, H.26
Coughlan, S.27
Butler, J.28
Calvo, S.29
Ma, L.-J.30
Nicol, R.31
Purcell, S.32
Nusbaum, C.33
Galagan, J.E.34
Dirren, B.W.35
more..
-
16
-
-
33750597877
-
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
-
DOI 10.1038/nature05248, PII NATURE05248
-
Kamper, J. et al. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 444, 97-101 (2006). (Pubitemid 44684763)
-
(2006)
Nature
, vol.444
, Issue.7115
, pp. 97-101
-
-
Kamper, J.1
Kahmann, R.2
Bolker, M.3
Ma, L.-J.4
Brefort, T.5
Saville, B.J.6
Banuett, F.7
Kronstad, J.W.8
Gold, S.E.9
Muller, O.10
Perlin, M.H.11
Wosten, H.A.B.12
De Vries, R.13
Ruiz-Herrera, J.14
Reynaga-Pena, C.G.15
Snetselaar, K.16
McCann, M.17
Perez-Martin, J.18
Feldbrugge, M.19
Basse, C.W.20
Steinberg, G.21
Ibeas, J.I.22
Holloman, W.23
Guzman, P.24
Farman, M.25
Stajich, J.E.26
Sentandreu, R.27
Gonzalez-Prieto, J.M.28
Kennell, J.C.29
Molina, L.30
Schirawski, J.31
Mendoza-Mendoza, A.32
Greilinger, D.33
Munch, K.34
Rossel, N.35
Scherer, M.36
Vranes, M.37
Ladendorf, O.38
Vincon, V.39
Fuchs, U.40
Sandrock, B.41
Meng, S.42
Ho, E.C.H.43
Cahill, M.J.44
Boyce, K.J.45
Klose, J.46
Klosterman, S.J.47
Deelstra, H.J.48
Ortiz-Castellanos, L.49
Li, W.50
Sanchez-Alonso, P.51
Schreier, P.H.52
Hauser-Hahn, I.53
Vaupel, M.54
Koopmann, E.55
Friedrich, G.56
Voss, H.57
Schluter, T.58
Margolis, J.59
Platt, D.60
Swimmer, C.61
Gnirke, A.62
Chen, F.63
Vysotskaia, V.64
Mannhaupt, G.65
Guldener, U.66
Munsterkotter, M.67
Haase, D.68
Oesterheld, M.69
Mewes, H.-W.70
Mauceli, E.W.71
DeCaprio, D.72
Wade, C.M.73
Butler, J.74
Young, S.75
Jaffe, D.B.76
Calvo, S.77
Nusbaum, C.78
Galagan, J.79
Birren, B.W.80
more..
-
17
-
-
77952720032
-
Classifying genes to the correct Gene Ontology Slim term in Saccharomyces cerevisiae using neighbouring genes with classification learning
-
Amthauer, H. A. & Tsatsoulis, C. Classifying genes to the correct Gene Ontology Slim term in Saccharomyces cerevisiae using neighbouring genes with classification learning. BMC Genom. 11, 340 (2010).
-
(2010)
BMC Genom.
, vol.11
, pp. 340
-
-
Amthauer, H.A.1
Tsatsoulis, C.2
-
18
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): An expert resource for Glycogenomics
-
Cantarel, B. L. et al. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 37, 233-238 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 233-238
-
-
Cantarel, B.L.1
-
19
-
-
30544434099
-
Fungal secondary metabolism - From biochemistry to genomics
-
DOI 10.1038/nrmicro1286, PII N1286
-
Keller, N. P., Turner, G. & Bennett, J. W. Fungal secondary metabolism from biochemistry to genomics. Nat. Rev. Microbiol. 3, 937-947 (2005). (Pubitemid 43078157)
-
(2005)
Nature Reviews Microbiology
, vol.3
, Issue.12
, pp. 937-947
-
-
Keller, N.P.1
Turner, G.2
Bennett, J.W.3
-
20
-
-
33644536430
-
Characterization of the arom gene in Rhizoctonia solani, and transcription patterns under stable and induced hypovirulence conditions
-
Lakshman, D. K., Liu, C., Mishra, P. K. & Tavantzis, S. Characterization of the arom gene in Rhizoctonia solani, and transcription patterns under stable and induced hypovirulence conditions. Curr. Genet. 49, 166-177 (2006).
-
(2006)
Curr. Genet.
, vol.49
, pp. 166-177
-
-
Lakshman, D.K.1
Liu, C.2
Mishra, P.K.3
Tavantzis, S.4
-
21
-
-
77951144839
-
Perigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
-
Martin, F. et al. Perigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature 464, 1033-1038 (2010).
-
(2010)
Nature
, vol.464
, pp. 1033-1038
-
-
Martin, F.1
-
22
-
-
77955274600
-
SMURF: Genomic mapping of fungal secondary metabolite clusters
-
Khaldi, N. et al. SMURF: Genomic mapping of fungal secondary metabolite clusters. Fungal Genet. Biol. 47, 736-741 (2010).
-
(2010)
Fungal Genet. Biol.
, vol.47
, pp. 736-741
-
-
Khaldi, N.1
-
23
-
-
26944502019
-
Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs)
-
DOI 10.1093/nar/gki885
-
Rausch, C., Weber, T., Kohlbacher, O., Wohlleben, W. & Huson, D. H. Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs). Nucleic Acids Res. 33, 5799-5808 (2005). (Pubitemid 41742599)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.18
, pp. 5799-5808
-
-
Rausch, C.1
Weber, T.2
Kohlbacher, O.3
Wohlleben, W.4
Huson, D.H.5
-
24
-
-
78649449149
-
Progress in tracing the evolutionary paths of cytochrome P450
-
Nelson, D. R. Progress in tracing the evolutionary paths of cytochrome P450. Biochim. Biophys. Acta 1814, 14-18 (2010).
-
(2010)
Biochim. Biophys. Acta
, vol.1814
, pp. 14-18
-
-
Nelson D., .R.1
-
25
-
-
77951887229
-
Phylogenetic analysis of fungal ABC transporters
-
Kovalchuk, A. & Driessen, A. J. Phylogenetic analysis of fungal ABC transporters. BMC Genomics 11, 177 (2010).
-
(2010)
BMC Genomics
, vol.11
, pp. 177
-
-
Kovalchuk, A.1
Driessen, A.J.2
-
26
-
-
47249105555
-
The secretome of the maize pathogen Ustilago maydis
-
Mueller, O. et al. The secretome of the maize pathogen Ustilago maydis. Fungal Genet. Biol. 45, 63-70 (2008).
-
(2008)
Fungal Genet. Biol.
, vol.45
, pp. 63-70
-
-
Mueller, O.1
-
27
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
DOI 10.1038/nprot.2007.131, PII NPROT.2007.131
-
Emanuelsson, O., Brunak, S., von Heijne, G. & Nielsen, H. Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2, 953-971 (2007). (Pubitemid 46745592)
-
(2007)
Nature Protocols
, vol.2
, Issue.4
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
28
-
-
79955678515
-
FunSecKB: The fungal secretome knowledgebase
-
Lum, G. & Min, X. J. FunSecKB: the Fungal Secretome KnowledgeBase. Database (Oxford) 2011, bar001 (2011).
-
(2011)
Database (Oxford)
, vol.2011
-
-
Lum, G.1
Min, X.J.2
-
29
-
-
79960927037
-
Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana
-
Kemen, E. et al. Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana. PLoS Biol. 9, e1001094 (2011).
-
(2011)
PLoS Biol.
, vol.9
-
-
Kemen, E.1
-
30
-
-
77949714038
-
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
-
Ma, L. J. et al. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 464, 367-373 (2010).
-
(2010)
Nature
, vol.464
, pp. 367-373
-
-
Ma, L.J.1
-
31
-
-
77955086694
-
New developments in pathogenicity and virulence of necrotrophs
-
Oliver, R. P. & Solomon, P. S. New developments in pathogenicity and virulence of necrotrophs. Curr. Opin. Plant Biol. 13, 415-419 (2010).
-
(2010)
Curr. Opin. Plant Biol.
, vol.13
, pp. 415-419
-
-
Oliver, R.P.1
Solomon, P.S.2
-
32
-
-
77955805592
-
A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens
-
Faris, J. D. et al. A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens. Proc. Natl Acad. Sci. USA 107, 13544-13549 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 13544-13549
-
-
Faris, J.D.1
-
33
-
-
77954180878
-
Recent developments in effector biology of filamentous plant pathogens
-
Oliva, R. et al. Recent developments in effector biology of filamentous plant pathogens. Cell Microbiol. 12, 1015 (2010).
-
(2010)
Cell Microbiol.
, vol.12
, pp. 1015
-
-
Oliva, R.1
-
34
-
-
78651234971
-
Legionella metaeffector exploits host proteasome to temporally regulate cognate effector
-
Kubori, T., Shinzawa, N., Kanuka, H. & Nagai, H. Legionella metaeffector exploits host proteasome to temporally regulate cognate effector. PLoS Pathog. 6, e1001216 (2010).
-
(2010)
PLoS Pathog.
, vol.6
-
-
Kubori, T.1
Shinzawa, N.2
Kanuka, H.3
Nagai, H.4
-
35
-
-
77949284319
-
Bacterial toxin and effector glycosyltransferases
-
Belyi, Y. & Aktories, K. Bacterial toxin and effector glycosyltransferases. Biochim. Biophys. Acta 1800, 134-143 (2010).
-
(2010)
Biochim. Biophys. Acta
, vol.1800
, pp. 134-143
-
-
Belyi, Y.1
Aktories, K.2
-
36
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
DOI 10.1038/35000501
-
Alizadeh, A. A. et al. Distinct types of diffuse large B cell lymphoma identified by gene expression profiling. Nature 403, 503-511 (2000). (Pubitemid 30082188)
-
(2000)
Nature
, vol.403
, Issue.6769
, pp. 503-511
-
-
Alizadeh, A.A.1
Elsen, M.B.2
Davis, R.E.3
Ma, Ch.L.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
Powell, J.I.11
Yang, L.12
Maru, G.E.13
Moore, T.14
Hudson Jr., J.15
Lu, L.16
Lewis, D.B.17
Tibshirani, R.18
Sherlock, G.19
Chan, W.C.20
Greiner, T.C.21
Weisenburger, D.D.22
Armitage, J.O.23
Warnke, R.24
Levy, R.25
Wilson, W.26
Grever, M.R.27
Byrd, J.C.28
Botstein, D.29
Brown, P.O.30
Staudt, L.M.31
more..
-
37
-
-
61749104584
-
Comparative genomics of MAP kinase and calcium-calcineurin signalling components in plant and human pathogenic fungi
-
Rispail, N. et al. Comparative genomics of MAP kinase and calcium-calcineurin signalling components in plant and human pathogenic fungi. Fungal Genet. Biol. 46, 287-298 (2009).
-
(2009)
Fungal Genet. Biol.
, vol.46
, pp. 287-298
-
-
Rispail, N.1
-
38
-
-
0030895154
-
G proteins in Ustilago maydis: Transmission of multiple signals?
-
DOI 10.1093/emboj/16.8.1934
-
Regenfelder, E. et al. G proteins in Ustilago maydis: transmission of multiple signals? EMBO J. 16, 1934-1942 (1997). (Pubitemid 27170954)
-
(1997)
EMBO Journal
, vol.16
, Issue.8
, pp. 1934-1942
-
-
Regenfelder, E.1
Spellig, T.2
Hartmann, A.3
Lauenstein, S.4
Bolker, M.5
Kahmann, R.6
-
39
-
-
0038331933
-
An unknown mechanism promotes somatic incompatibility in Ceratobasidium bicorne
-
Hietala, A. M., Korhonen, K. & Sen, R. An unknown mechanism promotes somatic incompatibility in Ceratobasidium bicorne. Mycologia 95, 239-250 (2003). (Pubitemid 36557823)
-
(2003)
Mycologia
, vol.95
, Issue.2
, pp. 239-250
-
-
Hietala, A.M.1
Korhonen, K.2
Sen, R.3
-
40
-
-
77956820271
-
A mating type gene expression can drive clamp formation in the bipolar mushroom Pholiota microspora (Pholiota nameko)
-
Yi, R., Mukaiyama, H., Tachikawa, T., Shimomura, N. & Aimi, T. A mating type gene expression can drive clamp formation in the bipolar mushroom Pholiota microspora (Pholiota nameko). Eukaryot. Cell 9, 1109-1119 (2010).
-
(2010)
Eukaryot. Cell
, vol.9
, pp. 1109-1119
-
-
Yi, R.1
Mukaiyama, H.2
Tachikawa, T.3
Shimomura, N.4
Aimi, T.5
-
41
-
-
4644235775
-
Independent genetic mechanisms mediate turgor generation and penetration peg formation during plant infection in the rice blast fungus
-
DOI 10.1111/j.1365-2958.2004.04220.x
-
Park, G., Bruno, K. S., Staiger, C. J., Talbot, N. J. & Xu, J. R. Independent genetic mechanisms mediate turgor generation and penetration peg formation during plant infection in the rice blast fungus. Mol. Microbiol. 53, 1695-1707 (2004). (Pubitemid 39265315)
-
(2004)
Molecular Microbiology
, vol.53
, Issue.6
, pp. 1695-1707
-
-
Park, G.1
Bruno, K.S.2
Staiger, C.J.3
Talbot, N.J.4
Xu, J.-R.5
-
42
-
-
67649884743
-
Fast and accurate short read alignment with Burrows- Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows- Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
43
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
44
-
-
84860513986
-
PILER: Identification and classification of genomic repeats
-
Edgar, R. C. & Myers, E. W. PILER: identification and classification of genomic repeats. Bioinformatics 21, 152-158 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 152-158
-
-
Edgar, R.C.1
Myers, E.W.2
-
45
-
-
29144455282
-
De novo identification of repeat families in large genomes
-
Price, A. L., Jones, N. C. & Pevzner, P. A. De novo identification of repeat families in large genomes. Bioinformatics 21, 351-358 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 351-358
-
-
Price, A.L.1
Jones, N.C.2
Pevzner, P.A.3
-
46
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
DOI 10.1159/000084979
-
Jurka, J. et al. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110, 462-467 (2005). (Pubitemid 41159923)
-
(2005)
Cytogenetic and Genome Research
, vol.110
, Issue.1-4
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
47
-
-
33747830848
-
AUGUSTUS: Ab initio prediction of alternative transcripts
-
Stanke, M. et al. AUGUSTUS: ab initio prediction of alternative transcripts. Nucleic Acids Res. 34, 435-439 (2006).
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 435-439
-
-
Stanke, M.1
-
48
-
-
57149099395
-
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
-
Ter-Hovhannisyan, V., Lomsadze, A., Chernoff, Y. O. & Borodovsky, M. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 18, 1979-1990 (2008).
-
(2008)
Genome Res.
, vol.18
, pp. 1979-1990
-
-
Ter-Hovhannisyan, V.1
Lomsadze, A.2
Chernoff, Y.O.3
Borodovsky, M.4
-
49
-
-
0030627982
-
Neural network prediction of translation initiation sites in eukaryotes: Perspectives for EST and genome analysis
-
Pedersen, A. G. & Nielsen, H. Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis. Proc. Int. Conf. Intell. Syst. Mol. Biol. 5, 226-233 (1997).
-
(1997)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.5
, pp. 226-233
-
-
Pedersen, A.G.1
Nielsen, H.2
-
50
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
51
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright, A. J., Van Dongen, S. & Ouzounis, C. A. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30, 1575-1584 (2002). (Pubitemid 34679732)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.7
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
52
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
DOI 10.1093/bioinformatics/btm404
-
Larkin, M. A. et al. Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948 (2007). (Pubitemid 350162903)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
Mcgettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
53
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
DOI 10.1093/molbev/msm088
-
Yang, Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591 (2007). (Pubitemid 47236688)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
-
54
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
55
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
DOI 10.1073/pnas.95.25.14863
-
Eisen, M. B., Spellman, P. T., Brown, P. O. & Botstein, D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA 95, 14863-14868 (1998). (Pubitemid 29003722)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.25
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
56
-
-
13044304179
-
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers
-
DOI 10.1073/pnas.96.16.9212
-
Perou, C. M. et al. Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Proc. Natl Acad. Sci. USA 96, 9212-9217 (1999). (Pubitemid 29374734)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.16
, pp. 9212-9217
-
-
Perou, C.M.1
Jeffrey, S.S.2
Van De Rijn, M.3
Rees, C.A.4
Eisen, M.B.5
Ross, D.T.6
Pergamenschikov, A.7
Williams, C.F.8
Zhu, S.X.9
Lee, J.C.F.10
Lashkari, D.11
Shalon, D.12
Brown, P.O.13
Botstein, D.14
-
57
-
-
3142756502
-
Open source clustering software
-
DOI 10.1093/bioinformatics/bth078
-
de Hoon, M. J., Imoto, S., Nolan, J. & Miyano, S. Open source clustering software. Bioinformatics 20, 1453-1454 (2004). (Pubitemid 38931415)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1453-1454
-
-
De Hoon, M.J.L.1
Imoto, S.2
Nolan, J.3
Miyano, S.4
-
58
-
-
78149297086
-
TCAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database
-
Park, B. H., Karpinets, V., Syed, M. H., Leuze, M. R. & Uberbacher, E. C. TCAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database. Glycobiology 20, 1574-1584 (2010).
-
(2010)
Glycobiology
, vol.20
, pp. 1574-1584
-
-
Park, B.H.1
Karpinets, V.2
Syed, M.H.3
Leuze, M.R.4
Uberbacher, E.C.5
-
59
-
-
77950583676
-
Genome-wide prediction of G protein coupled receptors in Verticillium spp
-
Zheng, H. et al. Genome-wide prediction of G protein coupled receptors in Verticillium spp. Fungal Biol. 114, 359-368 (2010).
-
(2010)
Fungal Biol.
, vol.114
, pp. 359-368
-
-
Zheng, H.1
-
60
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones, D. T., Taylor, W. R. & Thornton, J. M. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8, 275-282 (1992).
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
|