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Volumn 8, Issue 8, 2012, Pages

Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose Using RNA Sequencing

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL ENZYME; LIGNOCELLULOSE; MESSENGER RNA;

EID: 84866145069     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1002875     Document Type: Article
Times cited : (123)

References (66)
  • 1
    • 74549126675 scopus 로고    scopus 로고
    • An overview of second generation biofuel technologies
    • Sims RE, Mabee W, Saddler JN, Taylor M, (2010) An overview of second generation biofuel technologies. Bioresour Technol 101: 1570-1580.
    • (2010) Bioresour Technol , vol.101 , pp. 1570-1580
    • Sims, R.E.1    Mabee, W.2    Saddler, J.N.3    Taylor, M.4
  • 2
    • 80051801783 scopus 로고    scopus 로고
    • Alternatives to Trichoderma reesei in biofuel production
    • Gusakov AV, (2011) Alternatives to Trichoderma reesei in biofuel production. Trends Biotechnol 29: 419-425.
    • (2011) Trends Biotechnol , vol.29 , pp. 419-425
    • Gusakov, A.V.1
  • 3
    • 33846950348 scopus 로고    scopus 로고
    • Challenges in engineering microbes for biofuels production
    • Stephanopoulos G, (2007) Challenges in engineering microbes for biofuels production. Science 315: 801-804.
    • (2007) Science , vol.315 , pp. 801-804
    • Stephanopoulos, G.1
  • 4
    • 77955558633 scopus 로고    scopus 로고
    • Trends and challenges in the microbial production of lignocellulosic bioalcohol fuels
    • Weber C, Farwick A, Benisch F, Brat D, Dietz H, et al. (2010) Trends and challenges in the microbial production of lignocellulosic bioalcohol fuels. Appl Microbiol Biotechnol 87: 1303-1315.
    • (2010) Appl Microbiol Biotechnol , vol.87 , pp. 1303-1315
    • Weber, C.1    Farwick, A.2    Benisch, F.3    Brat, D.4    Dietz, H.5
  • 5
    • 0033777226 scopus 로고    scopus 로고
    • Filamentous fungi as microbial cell factories for food use
    • Archer DB, (2000) Filamentous fungi as microbial cell factories for food use. Curr Opin Biotechnol 11: 478-483.
    • (2000) Curr Opin Biotechnol , vol.11 , pp. 478-483
    • Archer, D.B.1
  • 6
    • 79951771512 scopus 로고    scopus 로고
    • Aspergillus as a multi-purpose cell factory: current status and perspectives
    • Meyer V, Wu B, Ram AF, (2011) Aspergillus as a multi-purpose cell factory: current status and perspectives. Biotechnol Lett 33: 469-476.
    • (2011) Biotechnol Lett , vol.33 , pp. 469-476
    • Meyer, V.1    Wu, B.2    Ram, A.F.3
  • 8
    • 79953312302 scopus 로고    scopus 로고
    • Suitability of Vader for transposon-mediated mutagenesis in Aspergillus niger
    • Hihlal E, Braumann I, van den Berg M, Kempken F, (2011) Suitability of Vader for transposon-mediated mutagenesis in Aspergillus niger. Appl Environ Microbiol 77: 2332-2336.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 2332-2336
    • Hihlal, E.1    Braumann, I.2    van den Berg, M.3    Kempken, F.4
  • 9
    • 79955603480 scopus 로고    scopus 로고
    • Fungal Gene Expression on Demand: an Inducible, Tunable, and Metabolism-Independent Expression System for Aspergillus niger
    • Meyer V, Wanka F, van Gent J, Arentshorst M, van den Hondel CA, et al. (2011) Fungal Gene Expression on Demand: an Inducible, Tunable, and Metabolism-Independent Expression System for Aspergillus niger. Appl Environ Microbiol 77: 2975-2983.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 2975-2983
    • Meyer, V.1    Wanka, F.2    van Gent, J.3    Arentshorst, M.4    van den Hondel, C.A.5
  • 10
    • 33846861493 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
    • Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, et al. (2007) Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol 25: 221-231.
    • (2007) Nat Biotechnol , vol.25 , pp. 221-231
    • Pel, H.J.1    de Winde, J.H.2    Archer, D.B.3    Dyer, P.S.4    Hofmann, G.5
  • 11
    • 79957958102 scopus 로고    scopus 로고
    • Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88
    • Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJI, Culley D, et al. (2011) Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88. Genome Research 21: 885-897.
    • (2011) Genome Research , vol.21 , pp. 885-897
    • Andersen, M.R.1    Salazar, M.P.2    Schaap, P.J.3    van de Vondervoort, P.J.I.4    Culley, D.5
  • 13
    • 34347206863 scopus 로고    scopus 로고
    • Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger
    • Guillemette T, van Peij NN, Goosen T, Lanthaler K, Robson GD, et al. (2007) Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger. BMC Genomics 8: 158.
    • (2007) BMC Genomics , vol.8 , pp. 158
    • Guillemette, T.1    van Peij, N.N.2    Goosen, T.3    Lanthaler, K.4    Robson, G.D.5
  • 15
    • 71349083307 scopus 로고    scopus 로고
    • Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis
    • Salazar M, Vongsangnak W, Panagiotou G, Andersen MR, Nielsen J, (2009) Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis. Mol Genet Genomics 282: 571-586.
    • (2009) Mol Genet Genomics , vol.282 , pp. 571-586
    • Salazar, M.1    Vongsangnak, W.2    Panagiotou, G.3    Andersen, M.R.4    Nielsen, J.5
  • 16
    • 60549083506 scopus 로고    scopus 로고
    • Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway
    • Jorgensen TR, Goosen T, Hondel CA, Ram AF, Iversen JJ, (2009) Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway. BMC Genomics. England. pp. 44.
    • (2009) BMC Genomics. England , pp. 44
    • Jorgensen, T.R.1    Goosen, T.2    Hondel, C.A.3    Ram, A.F.4    Iversen, J.J.5
  • 17
    • 0037364791 scopus 로고    scopus 로고
    • Regulation of Aspergillus genes encoding plant cell wall polysaccharide-degrading enzymes; relevance for industrial production
    • de Vries RP, (2003) Regulation of Aspergillus genes encoding plant cell wall polysaccharide-degrading enzymes; relevance for industrial production. Appl Microbiol Biotechnol 61: 10-20.
    • (2003) Appl Microbiol Biotechnol , vol.61 , pp. 10-20
    • de Vries, R.P.1
  • 19
    • 70349482673 scopus 로고    scopus 로고
    • Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing
    • Le Crom S, Schackwitz W, Pennacchio L, Magnuson JK, Culley DE, et al. (2009) Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing. Proc Natl Acad Sci U S A. United States pp. 16151-16156.
    • (2009) Proc Natl Acad Sci U S A. United States , pp. 16151-16156
    • Le Crom, S.1    Schackwitz, W.2    Pennacchio, L.3    Magnuson, J.K.4    Culley, D.E.5
  • 20
    • 67650578182 scopus 로고    scopus 로고
    • Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae
    • Coutinho PM, Andersen MR, Kolenova K, vanKuyk PA, Benoit I, et al. (2009) Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae. Fungal Genet Biol 46 Suppl 1: S161-S169.
    • (2009) Fungal Genet Biol , vol.46 , Issue.SUPPL. 1
    • Coutinho, P.M.1    Andersen, M.R.2    Kolenova, K.3    vanKuyk, P.A.4    Benoit, I.5
  • 21
    • 76049107428 scopus 로고    scopus 로고
    • Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa
    • Tian C, Beeson WT, Iavarone AT, Sun J, Marletta MA, et al. (2009) Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa. Proc Natl Acad Sci U S A 106: 22157-22162.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 22157-22162
    • Tian, C.1    Beeson, W.T.2    Iavarone, A.T.3    Sun, J.4    Marletta, M.A.5
  • 22
    • 78149310550 scopus 로고    scopus 로고
    • Methodology and Evidence Base on the Indirect Greenhouse Gas Effects of Using Wastes, Residues, and By-products for Biofuels and Bioenergy: Report to the Renewable Fuels Agency and the Department for Energy and Climate Change
    • Brander M, Hutchison C, Sherrington C, Ballinger A, Beswick C, et al. (2009) Methodology and Evidence Base on the Indirect Greenhouse Gas Effects of Using Wastes, Residues, and By-products for Biofuels and Bioenergy: Report to the Renewable Fuels Agency and the Department for Energy and Climate Change. Ecometrica, Eunomia, Imperial College London.
    • (2009)
    • Brander, M.1    Hutchison, C.2    Sherrington, C.3    Ballinger, A.4    Beswick, C.5
  • 23
    • 1542299137 scopus 로고    scopus 로고
    • The effect of CreA in glucose and xylose catabolism in Aspergillus nidulans
    • Prathumpai W, McIntyre M, Nielsen J, (2004) The effect of CreA in glucose and xylose catabolism in Aspergillus nidulans. Appl Microbiol Biotechnol 63: 748-753.
    • (2004) Appl Microbiol Biotechnol , vol.63 , pp. 748-753
    • Prathumpai, W.1    McIntyre, M.2    Nielsen, J.3
  • 24
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y, (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 18: 1509-1517.
    • (2008) Genome Res , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 25
    • 66349083834 scopus 로고    scopus 로고
    • Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays
    • Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA, (2009) Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays. BMC Genomics 10: 221.
    • (2009) BMC Genomics , vol.10 , pp. 221
    • Bloom, J.S.1    Khan, Z.2    Kruglyak, L.3    Singh, M.4    Caudy, A.A.5
  • 26
    • 75249095274 scopus 로고    scopus 로고
    • DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
    • Wang L, Feng Z, Wang X, Zhang X, (2010) DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics. 2010 26: 136-138.
    • (2010) Bioinformatics. 2010 , vol.26 , pp. 136-138
    • Wang, L.1    Feng, Z.2    Wang, X.3    Zhang, X.4
  • 27
    • 77950948151 scopus 로고    scopus 로고
    • Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family
    • Harris PV, Welner D, McFarland KC, Re E, Navarro Poulsen JC, et al. (2010) Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family. Biochemistry 49: 3305-3316.
    • (2010) Biochemistry , vol.49 , pp. 3305-3316
    • Harris, P.V.1    Welner, D.2    McFarland, K.C.3    Re, E.4    Navarro Poulsen, J.C.5
  • 28
    • 80053088478 scopus 로고    scopus 로고
    • Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components
    • Quinlan RJ, Sweeney MD, Lo Leggio L, Otten H, Poulsen JC, et al. (2011) Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components. Proc Natl Acad Sci U S A 108: 15079-15084.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 15079-15084
    • Quinlan, R.J.1    Sweeney, M.D.2    Lo Leggio, L.3    Otten, H.4    Poulsen, J.C.5
  • 29
    • 84855912007 scopus 로고    scopus 로고
    • Oxidative cleavage of cellulose by fungal copper-dependent polysaccharide monooxygenases
    • Beeson WT, Phillips CM, Cate JH, Marletta MA, (2012) Oxidative cleavage of cellulose by fungal copper-dependent polysaccharide monooxygenases. J Am Chem Soc 134: 890-892.
    • (2012) J Am Chem Soc , vol.134 , pp. 890-892
    • Beeson, W.T.1    Phillips, C.M.2    Cate, J.H.3    Marletta, M.A.4
  • 30
    • 1842502634 scopus 로고    scopus 로고
    • Aspergillus niger protein EstA defines a new class of fungal esterases within the alpha/beta hydrolase fold superfamily of proteins
    • Bourne Y, Hasper AA, Chahinian H, Juin M, De Graaff LH, et al. (2004) Aspergillus niger protein EstA defines a new class of fungal esterases within the alpha/beta hydrolase fold superfamily of proteins. Structure 12: 677-687.
    • (2004) Structure , vol.12 , pp. 677-687
    • Bourne, Y.1    Hasper, A.A.2    Chahinian, H.3    Juin, M.4    de Graaff, L.H.5
  • 31
    • 0030833910 scopus 로고    scopus 로고
    • The faeA genes from Aspergillus niger and Aspergillus tubingensis encode ferulic acid esterases involved in degradation of complex cell wall polysaccharides
    • de Vries RP, Michelsen B, Poulsen CH, Kroon PA, van den Heuvel RH, et al. (1997) The faeA genes from Aspergillus niger and Aspergillus tubingensis encode ferulic acid esterases involved in degradation of complex cell wall polysaccharides. Appl Environ Microbiol 63: 4638-4644.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4638-4644
    • de Vries, R.P.1    Michelsen, B.2    Poulsen, C.H.3    Kroon, P.A.4    van den Heuvel, R.H.5
  • 33
    • 25144512451 scopus 로고    scopus 로고
    • The fungal hydrophobin RolA recruits polyesterase and laterally moves on hydrophobic surfaces
    • Takahashi T, Maeda H, Yoneda S, Ohtaki S, Yamagata Y, et al. (2005) The fungal hydrophobin RolA recruits polyesterase and laterally moves on hydrophobic surfaces. Mol Microbiol 57: 1780-1796.
    • (2005) Mol Microbiol , vol.57 , pp. 1780-1796
    • Takahashi, T.1    Maeda, H.2    Yoneda, S.3    Ohtaki, S.4    Yamagata, Y.5
  • 34
    • 33646102468 scopus 로고    scopus 로고
    • Novel hydrophobic surface binding protein, HsbA, produced by Aspergillus oryzae
    • Ohtaki S, Maeda H, Takahashi T, Yamagata Y, Hasegawa F, et al. (2006) Novel hydrophobic surface binding protein, HsbA, produced by Aspergillus oryzae. Appl Environ Microbiol 72: 2407-2413.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2407-2413
    • Ohtaki, S.1    Maeda, H.2    Takahashi, T.3    Yamagata, Y.4    Hasegawa, F.5
  • 35
    • 0033213017 scopus 로고    scopus 로고
    • Magnaporthe grisea pth11p is a novel plasma membrane protein that mediates appressorium differentiation in response to inductive substrate cues
    • DeZwaan TM, Carroll AM, Valent B, Sweigard JA, (1999) Magnaporthe grisea pth11p is a novel plasma membrane protein that mediates appressorium differentiation in response to inductive substrate cues. Plant Cell 11: 2013-2030.
    • (1999) Plant Cell , vol.11 , pp. 2013-2030
    • DeZwaan, T.M.1    Carroll, A.M.2    Valent, B.3    Sweigard, J.A.4
  • 36
    • 84860533971 scopus 로고    scopus 로고
    • Fuel pellets from wheat straw: The effect of lignin glass transition and surface waxes on pelletizing properties
    • Stelte W, Clemons C, Holm J, Ahrenfeldt J, Henriksen U, et al. (2012) Fuel pellets from wheat straw: The effect of lignin glass transition and surface waxes on pelletizing properties. Bioenerg. Res. (2012) 5: 450-458.
    • (2012) Bioenerg. Res. (2012) , vol.5 , pp. 450-458
    • Stelte, W.1    Clemons, C.2    Holm, J.3    Ahrenfeldt, J.4    Henriksen, U.5
  • 37
    • 79951554626 scopus 로고    scopus 로고
    • Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi
    • King BC, Waxman KD, Nenni NV, Walker LP, Bergstrom GC, et al. (2011) Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi. Biotechnol Biofuels 4: 4.
    • (2011) Biotechnol Biofuels , vol.4 , pp. 4
    • King, B.C.1    Waxman, K.D.2    Nenni, N.V.3    Walker, L.P.4    Bergstrom, G.C.5
  • 38
    • 84866165783 scopus 로고    scopus 로고
    • Transcriptional Regulation in Aspergillus
    • In: Machida M, Gomi K, editors, UK: Caister Academic Press
    • Kobayashi T, Kato M (2012) Transcriptional Regulation in Aspergillus. In: Machida M, Gomi K, editors. Aspergillus Molecular Biology and Genomics. UK: Caister Academic Press. 85-114.
    • (2012) Aspergillus Molecular Biology and Genomics , pp. 85-114
    • Kobayashi, T.1    Kato, M.2
  • 39
    • 0032758304 scopus 로고    scopus 로고
    • CreA modulates the XlnR-induced expression on xylose of Aspergillus niger genes involved in xylan degradation
    • de Vries RP, Visser J, de Graaff LH, (1999) CreA modulates the XlnR-induced expression on xylose of Aspergillus niger genes involved in xylan degradation. Res Microbiol 150: 281-285.
    • (1999) Res Microbiol , vol.150 , pp. 281-285
    • de Vries, R.P.1    Visser, J.2    de Graaff, L.H.3
  • 40
    • 0031660773 scopus 로고    scopus 로고
    • The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger
    • van Peij NN, Gielkens MM, de Vries RP, Visser J, de Graaff LH, (1998) The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger. Appl Environ Microbiol 64: 3615-3619.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3615-3619
    • van Peij, N.N.1    Gielkens, M.M.2    de Vries, R.P.3    Visser, J.4    de Graaff, L.H.5
  • 41
    • 0032867401 scopus 로고    scopus 로고
    • Two cellobiohydrolase-encoding genes from Aspergillus niger require D-xylose and the xylanolytic transcriptional activator XlnR for their expression
    • Gielkens MM, Dekkers E, Visser J, de Graaff LH, (1999) Two cellobiohydrolase-encoding genes from Aspergillus niger require D-xylose and the xylanolytic transcriptional activator XlnR for their expression. Appl Environ Microbiol 65: 4340-4345.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4340-4345
    • Gielkens, M.M.1    Dekkers, E.2    Visser, J.3    de Graaff, L.H.4
  • 42
    • 4744368323 scopus 로고    scopus 로고
    • Carbohydrate-binding modules: fine-tuning polysaccharide recognition
    • Boraston AB, Bolam DN, Gilbert HJ, Davies GJ, (2004) Carbohydrate-binding modules: fine-tuning polysaccharide recognition. Biochem J 382: 769-781.
    • (2004) Biochem J , vol.382 , pp. 769-781
    • Boraston, A.B.1    Bolam, D.N.2    Gilbert, H.J.3    Davies, G.J.4
  • 43
    • 77956988940 scopus 로고    scopus 로고
    • Carbohydrate-binding modules promote the enzymatic deconstruction of intact plant cell walls by targeting and proximity effects
    • Herve C, Rogowski A, Blake AW, Marcus SE, Gilbert HJ, et al. (2010) Carbohydrate-binding modules promote the enzymatic deconstruction of intact plant cell walls by targeting and proximity effects. Proc Natl Acad Sci U S A 107: 15293-15298.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 15293-15298
    • Herve, C.1    Rogowski, A.2    Blake, A.W.3    Marcus, S.E.4    Gilbert, H.J.5
  • 45
    • 0042858149 scopus 로고    scopus 로고
    • Transcriptional regulation of biomass-degrading enzymes in the filamentous fungus Trichoderma reesei
    • Foreman PK, Brown D, Dankmeyer L, Dean R, Diener S, et al. (2003) Transcriptional regulation of biomass-degrading enzymes in the filamentous fungus Trichoderma reesei. J Biol Chem 278: 31988-31997.
    • (2003) J Biol Chem , vol.278 , pp. 31988-31997
    • Foreman, P.K.1    Brown, D.2    Dankmeyer, L.3    Dean, R.4    Diener, S.5
  • 46
    • 0034142291 scopus 로고    scopus 로고
    • pgaA and pgaB encode two constitutively expressed endopolygalacturonases of Aspergillus niger
    • Parenicova L, Benen JA, Kester HC, Visser J, (2000) pgaA and pgaB encode two constitutively expressed endopolygalacturonases of Aspergillus niger. Biochem J 345: 637-644.
    • (2000) Biochem J , vol.345 , pp. 637-644
    • Parenicova, L.1    Benen, J.A.2    Kester, H.C.3    Visser, J.4
  • 48
    • 44149100746 scopus 로고    scopus 로고
    • Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles
    • Yuan XL, van der Kaaij RM, van den Hondel CA, Punt PJ, van der Maarel MJ, et al. (2008) Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles. Mol Genet Genomics 279: 545-561.
    • (2008) Mol Genet Genomics , vol.279 , pp. 545-561
    • Yuan, X.L.1    van der Kaaij, R.M.2    van den Hondel, C.A.3    Punt, P.J.4    van der Maarel, M.J.5
  • 49
    • 33846617381 scopus 로고    scopus 로고
    • Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods
    • Gowda M, Venu RC, Raghupathy MB, Nobuta K, Li H, et al. (2006) Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods. BMC Genomics 7: 310.
    • (2006) BMC Genomics , vol.7 , pp. 310
    • Gowda, M.1    Venu, R.C.2    Raghupathy, M.B.3    Nobuta, K.4    Li, H.5
  • 50
    • 78650861843 scopus 로고    scopus 로고
    • The prevalence and regulation of antisense transcripts in Schizosaccharomyces pombe
    • Ni T, Tu K, Wang Z, Song S, Wu H, et al. (2010) The prevalence and regulation of antisense transcripts in Schizosaccharomyces pombe. PLoS One 5: e15271.
    • (2010) PLoS One , vol.5
    • Ni, T.1    Tu, K.2    Wang, Z.3    Song, S.4    Wu, H.5
  • 52
    • 33751536642 scopus 로고    scopus 로고
    • Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms
    • Lapidot M, Pilpel Y, (2006) Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms. EMBO Rep 7: 1216-1222.
    • (2006) EMBO Rep , vol.7 , pp. 1216-1222
    • Lapidot, M.1    Pilpel, Y.2
  • 53
    • 45349103446 scopus 로고    scopus 로고
    • AcpA, a member of the GPR1/FUN34/YaaH membrane protein family, is essential for acetate permease activity in the hyphal fungus Aspergillus nidulans
    • Robellet X, Flipphi M, Pegot S, Maccabe AP, Velot C, (2008) AcpA, a member of the GPR1/FUN34/YaaH membrane protein family, is essential for acetate permease activity in the hyphal fungus Aspergillus nidulans. Biochem J 412: 485-493.
    • (2008) Biochem J , vol.412 , pp. 485-493
    • Robellet, X.1    Flipphi, M.2    Pegot, S.3    Maccabe, A.P.4    Velot, C.5
  • 54
    • 0034846209 scopus 로고    scopus 로고
    • Extraction and isolation of lignin for utilization as a standard to determine lignin concentration using the acetyl bromide spectrophotometric method
    • Fukushima RS, Hatfield RD, (2001) Extraction and isolation of lignin for utilization as a standard to determine lignin concentration using the acetyl bromide spectrophotometric method. J Agric Food Chem 49: 3133-3139.
    • (2001) J Agric Food Chem , vol.49 , pp. 3133-3139
    • Fukushima, R.S.1    Hatfield, R.D.2
  • 55
    • 18744364224 scopus 로고    scopus 로고
    • Can lignin be accurately measured?
    • Hatfield R, Fukushima RS, (2005) Can lignin be accurately measured? Crop Sci 45: 832-839.
    • (2005) Crop Sci , vol.45 , pp. 832-839
    • Hatfield, R.1    Fukushima, R.S.2
  • 57
    • 0024256003 scopus 로고
    • Genetic analysis and the construction of master strains for assignment of genes to six linkage groups in Aspergillus niger
    • Bos CJ, Debets AJ, Swart K, Huybers A, Kobus G, et al. (1988) Genetic analysis and the construction of master strains for assignment of genes to six linkage groups in Aspergillus niger. Curr Genet 14: 437-443.
    • (1988) Curr Genet , vol.14 , pp. 437-443
    • Bos, C.J.1    Debets, A.J.2    Swart, K.3    Huybers, A.4    Kobus, G.5
  • 58
    • 0009453976 scopus 로고
    • Replacement of chromosome segments with altered DNA sequences constructed in vitro
    • Scherer S, Davis RW, (1979) Replacement of chromosome segments with altered DNA sequences constructed in vitro. Proc Natl Acad Sci U S A 76: 4951-4955.
    • (1979) Proc Natl Acad Sci U S A , vol.76 , pp. 4951-4955
    • Scherer, S.1    Davis, R.W.2
  • 59
    • 0021668558 scopus 로고
    • A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance
    • Boeke JD, LaCroute F, Fink GR, (1984) A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol Gen Genet 197: 345-346.
    • (1984) Mol Gen Genet , vol.197 , pp. 345-346
    • Boeke, J.D.1    LaCroute, F.2    Fink, G.R.3
  • 63
    • 84857205586 scopus 로고    scopus 로고
    • WheatGenome.info: an integrated database and portal for wheat genome information
    • Lai K, Berkman PJ, Lorenc MT, Duran C, Smits L, et al. (2012) WheatGenome.info: an integrated database and portal for wheat genome information. Plant Cell Physiol 53: e2.
    • (2012) Plant Cell Physiol , vol.53
    • Lai, K.1    Berkman, P.J.2    Lorenc, M.T.3    Duran, C.4    Smits, L.5
  • 64
    • 0033662168 scopus 로고    scopus 로고
    • A modified silver staining protocol for visualization of proteins compatible with matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry
    • Yan JX, Wait R, Berkelman T, Harry RA, Westbrook JA, et al. (2000) A modified silver staining protocol for visualization of proteins compatible with matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry. Electrophoresis 21: 3666-3672.
    • (2000) Electrophoresis , vol.21 , pp. 3666-3672
    • Yan, J.X.1    Wait, R.2    Berkelman, T.3    Harry, R.A.4    Westbrook, J.A.5
  • 65
    • 79957857260 scopus 로고    scopus 로고
    • Xylose triggers reversible phosphorylation of XlnR, the fungal transcriptional activator of xylanolytic and cellulolytic genes in Aspergillus oryzae
    • Noguchi Y, Tanaka H, Kanamaru K, Kato M, Kobayashi T, (2011) Xylose triggers reversible phosphorylation of XlnR, the fungal transcriptional activator of xylanolytic and cellulolytic genes in Aspergillus oryzae. Biosci Biotechnol Biochem 75: 953-959.
    • (2011) Biosci Biotechnol Biochem , vol.75 , pp. 953-959
    • Noguchi, Y.1    Tanaka, H.2    Kanamaru, K.3    Kato, M.4    Kobayashi, T.5


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