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Volumn 7, Issue 1, 2015, Pages

Prediction of the potency of mammalian cyclooxygenase inhibitors with ensemble proteochemometric modeling

Author keywords

Applicability domain; Chemogenomics; Cyclooxygenases; Ensemble modeling; Proteochemometrics; QSAR

Indexed keywords


EID: 84924256017     PISSN: None     EISSN: 17582946     Source Type: Journal    
DOI: 10.1186/s13321-014-0049-z     Document Type: Article
Times cited : (33)

References (90)
  • 1
    • 23844505961 scopus 로고    scopus 로고
    • Is COX-2 a perpetrator or a protector? Selective COX-2 inhibitors remain controversial
    • 1:CAS:528:DC%2BD2MXoslGksL4%3D
    • Luo C, He Ml, Bohlin L. Is COX-2 a perpetrator or a protector? Selective COX-2 inhibitors remain controversial. Acta Pharm Sinic. 2005; 26(8):926-933.
    • (2005) Acta Pharm Sinic , vol.26 , Issue.8 , pp. 926-933
    • Luo, C.1    He, M.2    Bohlin, L.3
  • 2
    • 0015237292 scopus 로고
    • Inhibition of prostaglandin synthesis as a mechanism of action for aspirin-like drugs
    • 1:CAS:528:DyaE3MXltVyjur4%3D
    • Vane JR. Inhibition of prostaglandin synthesis as a mechanism of action for aspirin-like drugs. Nat New Biol. 1971; 231(25):232-235.
    • (1971) Nat New Biol , vol.231 , Issue.25 , pp. 232-235
    • Vane, J.R.1
  • 3
    • 84904268964 scopus 로고    scopus 로고
    • Quantifying the impact of NSAID-associated adverse events
    • Fine M. Quantifying the impact of NSAID-associated adverse events. Am J Manag Care. 2013; 19(14 Suppl):267-272.
    • (2013) Am J Manag Care , vol.19 , pp. 267-272
    • Fine, M.1
  • 4
    • 0025754779 scopus 로고
    • Expression of a mitogen-responsive gene encoding prostaglandin synthase is regulated by mRNA splicing
    • 1:CAS:528:DyaK38XhsVyr
    • Xie WL, Chipman JG, Robertson DL, Erikson RL, Simmons DL. Expression of a mitogen-responsive gene encoding prostaglandin synthase is regulated by mRNA splicing. Proc Nat Acad Sci. 1991; 88(7):2692-2696.
    • (1991) Proc Nat Acad Sci , vol.88 , Issue.7 , pp. 2692-2696
    • Xie, W.L.1    Chipman, J.G.2    Robertson, D.L.3    Erikson, R.L.4    Simmons, D.L.5
  • 6
    • 0033594911 scopus 로고    scopus 로고
    • Nonsteroid drug selectivities for cyclo-oxygenase-1 rather than cyclo-oxygenase-2 are associated with human gastrointestinal toxicity: A full in vitro analysis
    • 1:CAS:528:DyaK1MXltVOqsb0%3D
    • Warner TD, Giuliano F, Vojnovic I, Bukasa A, Mitchell JA, Vane JR. Nonsteroid drug selectivities for cyclo-oxygenase-1 rather than cyclo-oxygenase-2 are associated with human gastrointestinal toxicity: a full in vitro analysis. Proc Nat Acad Sci. 1999; 96(13):7563-7568.
    • (1999) Proc Nat Acad Sci , vol.96 , Issue.13 , pp. 7563-7568
    • Warner, T.D.1    Giuliano, F.2    Vojnovic, I.3    Bukasa, A.4    Mitchell, J.A.5    Vane, J.R.6
  • 7
    • 19744380776 scopus 로고    scopus 로고
    • Adenomatous Polyp Prevention on Vioxx (APPROVe) Trial Investigators: Cardiovascular events associated with rofecoxib in a colorectal adenoma chemoprevention trial
    • 1:CAS:528:DC%2BD2MXit1Kqu7o%3D
    • Bresalier RS, Sandler RS, Quan H, Bolognese JA, Oxenius B, Horgan K, Lines C, Riddell R, Morton D, Lanas A, Konstam MA, Baron JA. Adenomatous Polyp Prevention on Vioxx (APPROVe) Trial Investigators: Cardiovascular events associated with rofecoxib in a colorectal adenoma chemoprevention trial. N Engl J Med. 2005; 352(11):1092-1102.
    • (2005) N Engl J Med , vol.352 , Issue.11 , pp. 1092-1102
    • Bresalier, R.S.1    Sandler, R.S.2    Quan, H.3    Bolognese, J.A.4    Oxenius, B.5    Horgan, K.6    Lines, C.7    Riddell, R.8    Morton, D.9    Lanas, A.10    Konstam, M.A.11    Baron, J.A.12
  • 9
    • 36448969440 scopus 로고    scopus 로고
    • Selective COX-2 inhibitors, NSAIDs and cardiovascular events - Is celecoxib the safest choice?
    • 1:CAS:528:DC%2BD2sXhsVGrtLrP
    • Howes LG. Selective COX-2 inhibitors, NSAIDs and cardiovascular events - is celecoxib the safest choice?Ther Clin Risk Manag. 2007; 3(5):831-845.
    • (2007) Ther Clin Risk Manag , vol.3 , Issue.5 , pp. 831-845
    • Howes, L.G.1
  • 11
    • 84880732103 scopus 로고    scopus 로고
    • Use of NSAIDs in treating patients with arthritis
    • Crofford LJ. Use of NSAIDs in treating patients with arthritis. Arthritis Res Ther. 2013; 15(Suppl 3):S2.
    • (2013) Arthritis Res Ther , vol.15 , pp. 2
    • Crofford, L.J.1
  • 13
    • 84899918312 scopus 로고    scopus 로고
    • Cyclooxygenase inhibitors use is associated with reduced risk of esophageal adenocarcinoma in patients with Barretts esophagus: A meta-analysis
    • 1:CAS:528:DC%2BC2cXkvF2gtLo%3D
    • Zhang S, Zhang XQ, Ding XW, Yang RK, Huang SL, Kastelein F, Bruno M, Yu XJ, Zhou D, Zou XP. Cyclooxygenase inhibitors use is associated with reduced risk of esophageal adenocarcinoma in patients with Barretts esophagus: a meta-analysis. Br J Cancer. 2014; 110:2378-2388.
    • (2014) Br J Cancer , vol.110 , pp. 2378-2388
    • Zhang, S.1    Zhang, X.Q.2    Ding, X.W.3    Yang, R.K.4    Huang, S.L.5    Kastelein, F.6    Bruno, M.7    Yu, X.J.8    Zhou, D.9    Zou, X.P.10
  • 14
    • 84896415877 scopus 로고    scopus 로고
    • Celecoxib and ion channels: A story of unexpected discoveries
    • 1:CAS:528:DC%2BC2cXlvVWns7Y%3D
    • Frolov RV, Singh S. Celecoxib and ion channels: A story of unexpected discoveries. Eur J Pharmacol. 2014; 730:61-71.
    • (2014) Eur J Pharmacol , vol.730 , pp. 61-71
    • Frolov, R.V.1    Singh, S.2
  • 15
    • 51349150407 scopus 로고    scopus 로고
    • The role of non-steroidal anti-inflammatory drugs in the risk of development and treatment of hematologic malignancies
    • 1:CAS:528:DC%2BD1cXhtVOitLjI
    • Robak P, Smolewski P, Robak T. The role of non-steroidal anti-inflammatory drugs in the risk of development and treatment of hematologic malignancies. Leuk Lymphoma. 2008; 49(8):1452-1462.
    • (2008) Leuk Lymphoma , vol.49 , Issue.8 , pp. 1452-1462
    • Robak, P.1    Smolewski, P.2    Robak, T.3
  • 16
    • 0033759331 scopus 로고    scopus 로고
    • COX-2 inhibition, apoptosis, and chemoprevention by nonsteroidal anti-inflammatory drugs
    • 1:CAS:528:DC%2BD3cXotFWrsrs%3D
    • Moore BC, Simmons DL. COX-2 inhibition, apoptosis, and chemoprevention by nonsteroidal anti-inflammatory drugs. Curr Med Chem. 2000; 7(11):1131-1144.
    • (2000) Curr Med Chem , vol.7 , Issue.11 , pp. 1131-1144
    • Moore, B.C.1    Simmons, D.L.2
  • 17
    • 48049110545 scopus 로고    scopus 로고
    • Selective COX-2 inhibitor celecoxib combined with EGFR-TKI ZD1839 on non-small cell lung cancer cell lines: In vitro toxicity and mechanism study
    • 1:CAS:528:DC%2BD1cXotVOgtbw%3D
    • Chen L, He Y, Huang H, Liao H, Wei W. Selective COX-2 inhibitor celecoxib combined with EGFR-TKI ZD1839 on non-small cell lung cancer cell lines: in vitro toxicity and mechanism study. Med Oncol. 2008; 25(2):161-171.
    • (2008) Med Oncol , vol.25 , Issue.2 , pp. 161-171
    • Chen, L.1    He, Y.2    Huang, H.3    Liao, H.4    Wei, W.5
  • 18
    • 0037138743 scopus 로고    scopus 로고
    • Nonsteroidal anti-inflammatory drugs as anticancer agents: Mechanistic, pharmacologic, and clinical issues
    • 1:CAS:528:DC%2BD38Xit1ygtb8%3D
    • Thun MJ, Henley SJ, Patrono C. Nonsteroidal anti-inflammatory drugs as anticancer agents: mechanistic, pharmacologic, and clinical issues. J Nat Cancer Inst. 2002; 94(4):252-266.
    • (2002) J Nat Cancer Inst , vol.94 , Issue.4 , pp. 252-266
    • Thun, M.J.1    Henley, S.J.2    Patrono, C.3
  • 19
    • 45949102420 scopus 로고    scopus 로고
    • Celecoxib-induced growth inhibition in SW480 colon cancer cells is associated with activation of protein kinase G
    • 1:CAS:528:DC%2BD1cXotVynu7c%3D
    • Soh JW, Kazi JU, Li H, Thompson WJ, Weinstein IB. Celecoxib-induced growth inhibition in SW480 colon cancer cells is associated with activation of protein kinase G. Mol Carcinog. 2008; 47(7):519-525.
    • (2008) Mol Carcinog , vol.47 , Issue.7 , pp. 519-525
    • Soh, J.W.1    Kazi, J.U.2    Li, H.3    Thompson, W.J.4    Weinstein, I.B.5
  • 20
    • 0030911815 scopus 로고    scopus 로고
    • Cyclo-oxygenase isoenzymes. How recent findings affect thinking about nonsteroidal anti-inflammatory drugs
    • 1:CAS:528:DyaK2sXisFGgur8%3D
    • Jouzeau JY, Terlain B, Abid A, Nédélec E, Netter P. Cyclo-oxygenase isoenzymes. How recent findings affect thinking about nonsteroidal anti-inflammatory drugs. Drugs. 1997; 53(4):563-582.
    • (1997) Drugs , vol.53 , Issue.4 , pp. 563-582
    • Jouzeau, J.Y.1    Terlain, B.2    Abid, A.3    Nédélec, E.4    Netter, P.5
  • 21
    • 43749091527 scopus 로고    scopus 로고
    • Gastrointestinal and cardiovascular risks of nonsteroidal anti-inflammatory drugs
    • 1:CAS:528:DC%2BD1cXmt1OjsrY%3D
    • Jones R, Rubin G, Berenbaum F, Scheiman J. Gastrointestinal and cardiovascular risks of nonsteroidal anti-inflammatory drugs. Am J Med. 2008; 121(6):464-474.
    • (2008) Am J Med , vol.121 , Issue.6 , pp. 464-474
    • Jones, R.1    Rubin, G.2    Berenbaum, F.3    Scheiman, J.4
  • 22
    • 84890889182 scopus 로고    scopus 로고
    • Mitigating the cardiovascular and renal effects of NSAIDs
    • Curiel RV, Katz JD. Mitigating the cardiovascular and renal effects of NSAIDs. Pain Med. 2013; 14 Suppl 1:S23-28.
    • (2013) Pain Med , vol.141 , pp. 23-28
    • Curiel, R.V.1    Katz, J.D.2
  • 23
    • 34147119080 scopus 로고    scopus 로고
    • Structural and functional basis of cyclooxygenase inhibition
    • 1:CAS:528:DC%2BD2sXisFeisL8%3D
    • Blobaum AL, Marnett LJ. Structural and functional basis of cyclooxygenase inhibition. J Med Chem. 2007; 50(7):1425-1441.
    • (2007) J Med Chem , vol.50 , Issue.7 , pp. 1425-1441
    • Blobaum, A.L.1    Marnett, L.J.2
  • 24
    • 0033760250 scopus 로고    scopus 로고
    • Structural approaches to explain the selectivity of COX-2 inhibitors: Is there a common pharmacophore?
    • 1:CAS:528:DC%2BD3cXotFWrsrw%3D
    • Dannhardt G, Laufer S. Structural approaches to explain the selectivity of COX-2 inhibitors: is there a common pharmacophore?Curr Med Chem. 2000; 7(11):1101-1112.
    • (2000) Curr Med Chem , vol.7 , Issue.11 , pp. 1101-1112
    • Dannhardt, G.1    Laufer, S.2
  • 26
    • 36949003692 scopus 로고    scopus 로고
    • Computer aided drug design approaches to develop cyclooxygenase based novel anti-inflammatory and anti-cancer drugs
    • 1:CAS:528:DC%2BD2sXhsVOrs7rM
    • Reddy RN, Mutyala R, Aparoy P, Reddanna P, Reddy MR. Computer aided drug design approaches to develop cyclooxygenase based novel anti-inflammatory and anti-cancer drugs. Curr Pharm Des. 2007; 13(34):3505-3517.
    • (2007) Curr Pharm des , vol.13 , Issue.34 , pp. 3505-3517
    • Reddy, R.N.1    Mutyala, R.2    Aparoy, P.3    Reddanna, P.4    Reddy, M.R.5
  • 27
    • 1542613792 scopus 로고    scopus 로고
    • Computational studies of COX-2 inhibitors: 3D-QSAR and docking
    • 1:CAS:528:DC%2BD2cXitFeqtrg%3D
    • Kim HJ, Chae CH, Yi KY, Park KL, Yoo Se. Computational studies of COX-2 inhibitors: 3D-QSAR and docking. Bioorg Med Chem Lett. 2004; 12(7):1629-1641.
    • (2004) Bioorg Med Chem Lett , vol.12 , Issue.7 , pp. 1629-1641
    • Kim, H.J.1    Chae, C.H.2    Yi, K.Y.3    Park, K.L.4    Yoo, S.5
  • 28
    • 84929941881 scopus 로고    scopus 로고
    • Synthesis and biological evaluation of substituted 5-methyl-2-phenyl-1H-pyrazol-3(2H)-one derivatives as selective COX-2 inhibitors: Molecular docking study
    • Dube PN, Bule SS, Mokale SN, Kumbhare MR, Dighe PR, Ushir YV. Synthesis and biological evaluation of substituted 5-methyl-2-phenyl-1H-pyrazol-3(2H)-one derivatives as selective COX-2 inhibitors: Molecular docking study. Chem Biol Drug Des. 2014.
    • (2014) Chem Biol Drug Des.
    • Dube, P.N.1    Bule, S.S.2    Mokale, S.N.3    Kumbhare, M.R.4    Dighe, P.R.5    Ushir, Y.V.6
  • 29
    • 84864040120 scopus 로고    scopus 로고
    • 3D-QSAR studies of some tetrasubstituted pyrazoles as COX-II inhibitors
    • 1:CAS:528:DC%2BC38XhsFSru7zK
    • Gupta GK, Kumar A. 3D-QSAR studies of some tetrasubstituted pyrazoles as COX-II inhibitors. Acta Pol Pharm. 2012; 69(4):763-772.
    • (2012) Acta Pol Pharm , vol.69 , Issue.4 , pp. 763-772
    • Gupta, G.K.1    Kumar, A.2
  • 30
    • 27944495933 scopus 로고    scopus 로고
    • QSAR analysis of meclofenamic acid analogues as selective COX-2 inhibitors
    • 1:CAS:528:DC%2BD2MXht1GitLbJ
    • Narsinghani T, Chaturvedi SC. QSAR analysis of meclofenamic acid analogues as selective COX-2 inhibitors. Bioorg Med Chem Lett. 2006; 16(2):461-468.
    • (2006) Bioorg Med Chem Lett , vol.16 , Issue.2 , pp. 461-468
    • Narsinghani, T.1    Chaturvedi, S.C.2
  • 31
    • 0036264678 scopus 로고    scopus 로고
    • Proteochemometrics modeling of the interaction of amine g-protein coupled receptors with a diverse set of ligands
    • 1:CAS:528:DC%2BD38XksVWrtb4%3D
    • Lapinsh M, Prusis P, Lundstedt T, Wikberg JES. Proteochemometrics modeling of the interaction of amine g-protein coupled receptors with a diverse set of ligands. Mol Pharmacol. 2002; 61(6):1465-1475.
    • (2002) Mol Pharmacol , vol.61 , Issue.6 , pp. 1465-1475
    • Lapinsh, M.1    Prusis, P.2    Lundstedt, T.3    Wikberg, J.E.S.4
  • 32
    • 79952520897 scopus 로고    scopus 로고
    • Proteochemometric modeling as a tool to design selective compounds and for extrapolating to novel targets
    • 1:CAS:528:DC%2BC3MXksFGltQ%3D%3D
    • van Westen GJP, Wegner JK, IJzerman AP, van Vlijmen HWT, Bender A. Proteochemometric modeling as a tool to design selective compounds and for extrapolating to novel targets. Med Chem Commun. 2011; 2:16-30.
    • (2011) Med Chem Commun , vol.2 , pp. 16-30
    • Van Westen, G.J.P.1    Wegner, J.K.2    Ijzerman, A.P.3    Van Vlijmen, H.W.T.4    Bender, A.5
  • 35
    • 84874779833 scopus 로고    scopus 로고
    • Significantly improved HIV inhibitor efficacy prediction employing proteochemometric models generated from antivirogram data
    • 1:CAS:528:DC%2BC3sXkt1Wms7k%3D
    • van Westen GJP, Hendriks A, Wegner JK, IJzerman AP, van Vlijmen HW, Bender A. Significantly improved HIV inhibitor efficacy prediction employing proteochemometric models generated from antivirogram data. PLoS Comput Biol. 2013; 9(2):e1002899.
    • (2013) PLoS Comput Biol , vol.9 , Issue.2 , pp. 1002899
    • Van Westen, G.J.P.1    Hendriks, A.2    Wegner, J.K.3    Ijzerman, A.P.4    Van Vlijmen, H.W.5    Bender, A.6
  • 37
    • 84876174816 scopus 로고    scopus 로고
    • Comparability of mixed IC50 data - A statistical analysis
    • 1:CAS:528:DC%2BC3sXmslSitrc%3D
    • Kalliokoski T, Kramer C, Vulpetti A, Gedeck P. Comparability of mixed IC50 data - a statistical analysis. PloS ONE. 2013; 8(4):e61007.
    • (2013) PloS ONE , vol.8 , Issue.4 , pp. 61007
    • Kalliokoski, T.1    Kramer, C.2    Vulpetti, A.3    Gedeck, P.4
  • 42
    • 77952772341 scopus 로고    scopus 로고
    • Extended-connectivity fingerprints
    • 1:CAS:528:DC%2BC3cXlt1Onsbg%3D
    • Rogers D, Hahn M. Extended-connectivity fingerprints. J Chem Inf Model. 2010; 50(5):742-754.
    • (2010) J Chem Inf Model , vol.50 , Issue.5 , pp. 742-754
    • Rogers, D.1    Hahn, M.2
  • 43
    • 33644963750 scopus 로고    scopus 로고
    • Circular fingerprints: Flexible molecular descriptors with applications from physical chemistry to ADME
    • Glem RC, Bender A, Arnby CH, Carlsson L, Boyer S, Smith J. Circular fingerprints: flexible molecular descriptors with applications from physical chemistry to ADME. IDrugs. 2006; 9(3):199-204.
    • (2006) IDrugs , vol.9 , Issue.3 , pp. 199-204
    • Glem, R.C.1    Bender, A.2    Arnby, C.H.3    Carlsson, L.4    Boyer, S.5    Smith, J.6
  • 46
    • 79953005609 scopus 로고    scopus 로고
    • PaDEL-descriptor: An open source software to calculate molecular descriptors and fingerprints
    • 1:CAS:528:DC%2BC3MXjsF2isLc%3D
    • Yap CW. PaDEL-descriptor: an open source software to calculate molecular descriptors and fingerprints. J Comput Chem. 2011; 32(7):1466-1474.
    • (2011) J Comput Chem , vol.32 , Issue.7 , pp. 1466-1474
    • Yap, C.W.1
  • 48
    • 0032474777 scopus 로고    scopus 로고
    • New chemical descriptors relevant for the design of biologically active peptides. A multivariate characterization of 87 amino acids
    • 1:CAS:528:DyaK1cXktlShuro%3D
    • Sandberg M, Eriksson L, Jonsson J, Sjöström M, Wold S. New chemical descriptors relevant for the design of biologically active peptides. A multivariate characterization of 87 amino acids. J Med Chem. 1998; 41(14):2481-2491.
    • (1998) J Med Chem , vol.41 , Issue.14 , pp. 2481-2491
    • Sandberg, M.1    Eriksson, L.2    Jonsson, J.3    Sjöström, M.4    Wold, S.5
  • 49
    • 56249113343 scopus 로고    scopus 로고
    • Building predictive models in R using the caret package
    • Kuhn M. Building predictive models in R using the caret package. J Stat Soft. 2008; 28(5):1-26.
    • (2008) J Stat Soft , vol.28 , Issue.5 , pp. 1-26
    • Kuhn, M.1
  • 52
    • 0037361983 scopus 로고    scopus 로고
    • Assessing model fit by cross-validation
    • 1:CAS:528:DC%2BD3sXlsFartA%3D%3D
    • Hawkins DM, Basak SC, Mills D. Assessing model fit by cross-validation. J Chem Inf Model. 2003; 43(2):579-586.
    • (2003) J Chem Inf Model , vol.43 , Issue.2 , pp. 579-586
    • Hawkins, D.M.1    Basak, S.C.2    Mills, D.3
  • 53
    • 84902801801 scopus 로고    scopus 로고
    • Computational chemogenomics: Is it more than inductive transfer?
    • 1:CAS:528:DC%2BC2cXntVeqs70%3D [10.1007/s10822-014-9743-1]
    • Brown J, Okuno Y, Marcou G, Varnek A, Horvath D. Computational chemogenomics: Is it more than inductive transfer?J Comput Aided Mol Des. 2014; 28(6):597-618. [10.1007/s10822-014-9743-1].
    • (2014) J Comput Aided Mol des , vol.28 , Issue.6 , pp. 597-618
    • Brown, J.1    Okuno, Y.2    Marcou, G.3    Varnek, A.4    Horvath, D.5
  • 55
    • 85046423034 scopus 로고    scopus 로고
    • Predictive quantitative structure-activity relationships modeling
    • Tropsha A, Golbraikh A. Predictive quantitative structure-activity relationships modeling. Handb Chemoinform Algorithms. 2010; 33:211.
    • (2010) Handb Chemoinform Algorithms , vol.33 , pp. 211
    • Tropsha, A.1    Golbraikh, A.2
  • 56
    • 0038724207 scopus 로고    scopus 로고
    • The importance of being earnest: Validation is the absolute essential for successful application and interpretation of QSPR models
    • 1:CAS:528:DC%2BD3sXkslOqsrw%3D
    • Tropsha A, Gramatica P, Gombar VK. The importance of being earnest: validation is the absolute essential for successful application and interpretation of QSPR models. QSAR Comb Sci. 2003; 22:69-77.
    • (2003) QSAR Comb Sci , vol.22 , pp. 69-77
    • Tropsha, A.1    Gramatica, P.2    Gombar, V.K.3
  • 57
    • 84862276184 scopus 로고    scopus 로고
    • The experimental uncertainty of heterogeneous public Ki data
    • 1:CAS:528:DC%2BC38XnsF2gtLY%3D
    • Kramer C, Kalliokoski T, Gedeck P, Vulpetti A. The experimental uncertainty of heterogeneous public Ki data. J Med Chem. 2012; 55(11):5165-5173.
    • (2012) J Med Chem , vol.55 , Issue.11 , pp. 5165-5173
    • Kramer, C.1    Kalliokoski, T.2    Gedeck, P.3    Vulpetti, A.4
  • 58
    • 84872223600 scopus 로고    scopus 로고
    • QSARs, data and error in the modern age of drug discovery
    • 2012-09-01T00:00:00;12(17):1896-1902
    • Kramer C, Lewis R. QSARs, data and error in the modern age of drug discovery. Curr Top Med Chem. 2012-09-01T00:00:00;12(17):1896-1902.
    • Curr Top Med Chem.
    • Kramer, C.1    Lewis, R.2
  • 59
    • 84859204703 scopus 로고    scopus 로고
    • Three useful dimensions for domain applicability in QSAR models using random forest
    • 1:CAS:528:DC%2BC38XjtFWhsL4%3D
    • Sheridan RP. Three useful dimensions for domain applicability in QSAR models using random forest. J Chem Inf Model. 2012; 52(3):814-823.
    • (2012) J Chem Inf Model , vol.52 , Issue.3 , pp. 814-823
    • Sheridan, R.P.1
  • 60
    • 0035470889 scopus 로고    scopus 로고
    • Greedy function approximation: A gradient boosting machine
    • Friedman JH. Greedy function approximation: a gradient boosting machine. Ann Stat. 2000; 29:1189-1232.
    • (2000) Ann Stat , vol.29 , pp. 1189-1232
    • Friedman, J.H.1
  • 61
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman L. Random forests. Mach Learn. 2001; 45:5-32.
    • (2001) Mach Learn , vol.45 , pp. 5-32
    • Breiman, L.1
  • 64
    • 84888603687 scopus 로고    scopus 로고
    • Using random forest to model the domain applicability of another random forest model
    • 1:CAS:528:DC%2BC3sXhs1KktLnI
    • Sheridan RP. Using random forest to model the domain applicability of another random forest model. J Chem Inf Model. 2013; 53(11):2837-2850.
    • (2013) J Chem Inf Model , vol.53 , Issue.11 , pp. 2837-2850
    • Sheridan, R.P.1
  • 65
    • 84880697592 scopus 로고    scopus 로고
    • QSAR with experimental and predictive distributions: An information theoretic approach for assessing model quality
    • 1:CAS:528:DC%2BC3sXmslalu7k%3D
    • Wood DJ, Carlsson L, Eklund M, Norinder U, Stå lring J. QSAR with experimental and predictive distributions: an information theoretic approach for assessing model quality. J Comput Aided Mol Des. 2013; 27(3):203-219.
    • (2013) J Comput Aided Mol des , vol.27 , Issue.3 , pp. 203-219
    • Wood, D.J.1    Carlsson, L.2    Eklund, M.3    Norinder, U.4    Stå Lring, J.5
  • 66
    • 68149160790 scopus 로고    scopus 로고
    • Predicting the predictability: A unified approach to the applicability domain problem of QSAR models
    • 1:CAS:528:DC%2BD1MXnt1Cmsrs%3D
    • Dragos H, Gilles M, Alexandre V. Predicting the predictability: a unified approach to the applicability domain problem of QSAR models. J Chem Inf Model. 2009; 49(7):1762-1776.
    • (2009) J Chem Inf Model , vol.49 , Issue.7 , pp. 1762-1776
    • Dragos, H.1    Gilles, M.2    Alexandre, V.3
  • 69
    • 84857624995 scopus 로고    scopus 로고
    • Interpreting linear support vector machine models with heat map molecule coloring
    • 1:CAS:528:DC%2BC3MXksF2ju7Y%3D
    • Rosenbaum L, Hinselmann G, Jahn A, Zell A. Interpreting linear support vector machine models with heat map molecule coloring. J Cheminf. 2011; 3:11.
    • (2011) J Cheminf , vol.3 , pp. 11
    • Rosenbaum, L.1    Hinselmann, G.2    Jahn, A.3    Zell, A.4
  • 70
    • 76749120557 scopus 로고    scopus 로고
    • Interpretable correlation descriptors for quantitative structure-activity relationships
    • Spowage BM, Bruce CL, Hirst JD. Interpretable correlation descriptors for quantitative structure-activity relationships. J Cheminf. 2009; 1:22.
    • (2009) J Cheminf , vol.1 , pp. 22
    • Spowage, B.M.1    Bruce, C.L.2    Hirst, J.D.3
  • 71
    • 84866384167 scopus 로고    scopus 로고
    • Interpretability of SAR/QSAR Models of any complexity by atomic contributions
    • 1:CAS:528:DC%2BC38Xht1agsbrE
    • Marcou G, Horvath D, Solov'ev V, Arrault A, Vayer P, Varnek A. Interpretability of SAR/QSAR Models of any complexity by atomic contributions. Mol Inform. 2012; 31(9):639-642.
    • (2012) Mol Inform , vol.31 , Issue.9 , pp. 639-642
    • Marcou, G.1    Horvath, D.2    Solov'Ev, V.3    Arrault, A.4    Vayer, P.5    Varnek, A.6
  • 72
    • 84898789898 scopus 로고    scopus 로고
    • Universal approach for structural interpretation of QSAR/QSPR models
    • 1:CAS:528:DC%2BC3sXhsFOlurnL
    • Polishchuk PG, Kuzmin VE, Artemenko AG, Muratov EN. Universal approach for structural interpretation of QSAR/QSPR models. Mol Inform. 2013; 32:843-853.
    • (2013) Mol Inform , vol.32 , pp. 843-853
    • Polishchuk, P.G.1    Kuzmin, V.E.2    Artemenko, A.G.3    Muratov, E.N.4
  • 73
    • 84857477790 scopus 로고    scopus 로고
    • Global analysis of small molecule binding to related protein targets
    • Kruger FA, Overington JP. Global analysis of small molecule binding to related protein targets. PLoS Comput Biol. 2012; 8:e1.002333.
    • (2012) PLoS Comput Biol , vol.8 , pp. 1002333
    • Kruger, F.A.1    Overington, J.P.2
  • 75
    • 0024521543 scopus 로고
    • A concordance correlation coefficient to evaluate reproducibility
    • 1:STN:280:DyaL1M3kslKrtg%3D%3D
    • Lin LI. A concordance correlation coefficient to evaluate reproducibility. Biometrics. 1989; 45:255-268.
    • (1989) Biometrics , vol.45 , pp. 255-268
    • Lin, L.I.1
  • 76
    • 33646859346 scopus 로고    scopus 로고
    • A note on the concordance correlation coefficient
    • Steichen TJ, Cox NJ. A note on the concordance correlation coefficient. Stata J. 2002; 2(2):183-189(7).
    • (2002) Stata J , vol.2 , Issue.2 , pp. 183-1897
    • Steichen, T.J.1    Cox, N.J.2
  • 77
    • 20844450385 scopus 로고    scopus 로고
    • Statistical variation in progressive scrambling
    • 1:CAS:528:DC%2BD2MXltVaktg%3D%3D
    • Clark R, Fox P. Statistical variation in progressive scrambling. J Comput-Aided Mol Design. 2004; 18(7-9):563-576.
    • (2004) J Comput-Aided Mol Design , vol.18 , Issue.7-9 , pp. 563-576
    • Clark, R.1    Fox, P.2
  • 78
    • 62849109096 scopus 로고    scopus 로고
    • Healthy skepticism: Assessing realistic model performance
    • Brown SP, Muchmore SW, Hajduk PJ. Healthy skepticism: assessing realistic model performance. Drug Discov Today. 2009; 14(7-8):420-427.
    • (2009) Drug Discov Today , vol.14 , Issue.7-8 , pp. 420-427
    • Brown, S.P.1    Muchmore, S.W.2    Hajduk, P.J.3
  • 80
    • 0028853738 scopus 로고
    • Antiinflammatory 4,5-Diarylpyrroles. 2. Activity as a function of cyclooxygenase-2 inhibition
    • 1:CAS:528:DyaK2MXnvFSru7Y%3D
    • Wilkerson WW, Copeland RA, Covington M, Trzaskos JM. Antiinflammatory 4,5-Diarylpyrroles. 2. activity as a function of cyclooxygenase-2 inhibition. J Med Chem. 1995; 38(20):3895-3901.
    • (1995) J Med Chem , vol.38 , Issue.20 , pp. 3895-3901
    • Wilkerson, W.W.1    Copeland, R.A.2    Covington, M.3    Trzaskos, J.M.4
  • 83
    • 0036175354 scopus 로고    scopus 로고
    • COX-1/COX-2 inhibitors based on the methanone moiety
    • 1:CAS:528:DC%2BD38XhtlOit7s%3D
    • Dannhardt G, Fiebich BL, Schweppenhauser J. COX-1/COX-2 inhibitors based on the methanone moiety. Eur J Med Chem. 2002; 37(2):147-161.
    • (2002) Eur J Med Chem , vol.37 , Issue.2 , pp. 147-161
    • Dannhardt, G.1    Fiebich, B.L.2    Schweppenhauser, J.3
  • 84
    • 84863987411 scopus 로고    scopus 로고
    • Ortho-Carbaborane derivatives of indomethacin as cyclooxygenase (COX)-2 selective inhibitors
    • 1:CAS:528:DC%2BC38XpsVOnt7g%3D
    • Scholz M, Blobaum AL, Marnett LJ, Hey-Hawkins E. ortho-Carbaborane derivatives of indomethacin as cyclooxygenase (COX)-2 selective inhibitors. Bioorg Med Chem Lett. 2012; 20(15):4830-4837.
    • (2012) Bioorg Med Chem Lett , vol.20 , Issue.15 , pp. 4830-4837
    • Scholz, M.1    Blobaum, A.L.2    Marnett, L.J.3    Hey-Hawkins, E.4
  • 85
    • 84858446155 scopus 로고    scopus 로고
    • Novel acid-type cyclooxygenase-2 inhibitors: Design, synthesis, and structure-activity relationship for anti-inflammatory drug
    • 1:CAS:528:DC%2BC38XktFGru7w%3D
    • Hayashi S, Ueno N, Murase A, Nakagawa Y, Takada J. Novel acid-type cyclooxygenase-2 inhibitors: design, synthesis, and structure-activity relationship for anti-inflammatory drug. Eur J Med Chem. 2012; 50:179-195.
    • (2012) Eur J Med Chem , vol.50 , pp. 179-195
    • Hayashi, S.1    Ueno, N.2    Murase, A.3    Nakagawa, Y.4    Takada, J.5
  • 88
    • 11944262819 scopus 로고
    • Multiple hypothesis testing
    • Shaffer JP. Multiple hypothesis testing. Ann Rev Psychol. 1995; 46:561-584.
    • (1995) Ann Rev Psychol , vol.46 , pp. 561-584
    • Shaffer, J.P.1
  • 89
    • 84900329790 scopus 로고    scopus 로고
    • Matched molecular pair analysis: Significance and the impact of experimental uncertainty
    • 1:CAS:528:DC%2BC2cXmtlyhurc%3D
    • Kramer C, Fuchs JE, Whitebread S, Gedeck P, Liedl KR. Matched molecular pair analysis: significance and the impact of experimental uncertainty. J Med Chem. 2014; 57(9):3786-3802.
    • (2014) J Med Chem , vol.57 , Issue.9 , pp. 3786-3802
    • Kramer, C.1    Fuchs, J.E.2    Whitebread, S.3    Gedeck, P.4    Liedl, K.R.5
  • 90
    • 54949134905 scopus 로고    scopus 로고
    • Chemical substructures that enrich for biological activity
    • 1:CAS:528:DC%2BD1cXht12gtb3L
    • Klekota J, Roth FP. Chemical substructures that enrich for biological activity. Bioinformatics. 2008; 24(21):2518-2525.
    • (2008) Bioinformatics , vol.24 , Issue.21 , pp. 2518-2525
    • Klekota, J.1    Roth, F.P.2


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