메뉴 건너뛰기




Volumn 6, Issue 6, 2015, Pages 4036-4050

Novel long non-coding RNAs are specific diagnostic and prognostic markers for prostate cancer

Author keywords

Biomarkers; Exon array; In situ hybridization; Long non coding RNA; Prostate cancer

Indexed keywords

LONG UNTRANSLATED RNA; SMALL INTERFERING RNA; UNTRANSLATED RNA; TUMOR MARKER;

EID: 84924225344     PISSN: None     EISSN: 19492553     Source Type: Journal    
DOI: 10.18632/oncotarget.2879     Document Type: Article
Times cited : (43)

References (61)
  • 3
    • 84871919116 scopus 로고    scopus 로고
    • Risk stratification in prostate cancer screening
    • Roobol MJ, Carlsson S V. Risk stratification in prostate cancer screening. Nat Rev Urol. 2013; 10:38-48.
    • (2013) Nat Rev Urol , vol.10 , pp. 38-48
    • Roobol, M.J.1    Carlsson, S.V.2
  • 6
    • 85028134157 scopus 로고    scopus 로고
    • Clinical use of novel urine and blood based prostate cancer biomarkers: A review
    • Dijkstra S, Mulders PFA, Schalken JA. Clinical use of novel urine and blood based prostate cancer biomarkers: A review. Clin Biochem. 2014; 47:889-896.
    • (2014) Clin Biochem , vol.47 , pp. 889-896
    • Dijkstra, S.1    Mulders, P.F.A.2    Schalken, J.A.3
  • 15
    • 84871069553 scopus 로고    scopus 로고
    • Epigenetic regulation by long noncoding RNAs
    • Lee JT. Epigenetic regulation by long noncoding RNAs. Science. 2012; 338:1435-1439.
    • (2012) Science , vol.338 , pp. 1435-1439
    • Lee, J.T.1
  • 16
    • 84875183056 scopus 로고    scopus 로고
    • Structure and function of long noncoding RNAs in epigenetic regulation
    • 2013/03/07 ed2013
    • Mercer TR, Mattick JS. Structure and function of long noncoding RNAs in epigenetic regulation. Nat Struct Mol Biol. 2013/03/07 ed2013; 20:300-307.
    • Nat Struct Mol Biol , vol.20 , pp. 300-307
    • Mercer, T.R.1    Mattick, J.S.2
  • 18
    • 84917705502 scopus 로고    scopus 로고
    • A pathophysiological view of the long non-coding RNA world
    • Gesualdo F Di, Capaccioli S, Lulli M. A pathophysiological view of the long non-coding RNA world. Oncotarget. 2014.
    • (2014) Oncotarget
    • Gesualdo, F.D.1    Capaccioli, S.2    Lulli, M.3
  • 28
    • 84877357792 scopus 로고    scopus 로고
    • iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data
    • Sun K, Chen X, Jiang P, Song X, Wang H, Sun H. iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data. BMC Genomics. 2013; 14:S7.
    • (2013) BMC Genomics , vol.14 , pp. S7
    • Sun, K.1    Chen, X.2    Jiang, P.3    Song, X.4    Wang, H.5    Sun, H.6
  • 29
    • 79959446962 scopus 로고    scopus 로고
    • PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
    • Lin MF, Jungreis I, Kellis M. PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions. Bioinformatics. 2011; 27:i275-i282.
    • (2011) Bioinformatics , vol.27 , pp. i275-i282
    • Lin, M.F.1    Jungreis, I.2    Kellis, M.3
  • 33
    • 70349138094 scopus 로고    scopus 로고
    • Differential gene expression in tumor adjacent histologically normal prostatic tissue indicates field cancerization
    • Haaland CM, Heaphy CM, Butler KS, Fischer EG, Griffith JK, Bisoffi M. Differential gene expression in tumor adjacent histologically normal prostatic tissue indicates field cancerization. Int J Oncol. 2009; 35:537-546.
    • (2009) Int J Oncol , vol.35 , pp. 537-546
    • Haaland, C.M.1    Heaphy, C.M.2    Butler, K.S.3    Fischer, E.G.4    Griffith, J.K.5    Bisoffi, M.6
  • 34
    • 26844467247 scopus 로고    scopus 로고
    • Differences in gene expression in prostate cancer, normal appearing prostate tissue adjacent to cancer and prostate tissue from cancer free organ donors
    • Chandran UR, Dhir R, Ma C, Michalopoulos G, Becich M, Gilbertson J. Differences in gene expression in prostate cancer, normal appearing prostate tissue adjacent to cancer and prostate tissue from cancer free organ donors. BMC Cancer. 2005; 5:45.
    • (2005) BMC Cancer , vol.5 , pp. 45
    • Chandran, U.R.1    Dhir, R.2    Ma, C.3    Michalopoulos, G.4    Becich, M.5    Gilbertson, J.6
  • 35
    • 2642544841 scopus 로고    scopus 로고
    • Using tissue adjacent to carcinoma as a normal control: an obvious but questionable practice
    • Braakhuis BJM, Leemans CR, Brakenhoff RH. Using tissue adjacent to carcinoma as a normal control: an obvious but questionable practice. J Pathol. 2004; 203:620-621.
    • (2004) J Pathol , vol.203 , pp. 620-621
    • Braakhuis, B.J.M.1    Leemans, C.R.2    Brakenhoff, R.H.3
  • 48
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 2013; 14:R36.
    • (2013) Genome Biol , vol.14 , pp. R36
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 49
    • 80051941094 scopus 로고    scopus 로고
    • Identification of novel transcripts in annotated genomes using RNA-Seq
    • Roberts A, Pimentel H, Trapnell C, Pachter L. Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics. 2011; 27:2325-2329.
    • (2011) Bioinformatics , vol.27 , pp. 2325-2329
    • Roberts, A.1    Pimentel, H.2    Trapnell, C.3    Pachter, L.4
  • 54
    • 0018779369 scopus 로고
    • Establishment and characterization of a human prostatic carcinoma cell line (PC-3)
    • Kaighn ME, Narayan KS, Ohnuki Y, Lechner JF, Jones LW. Establishment and characterization of a human prostatic carcinoma cell line (PC-3). Invest Urol. 1979; 17:16-23.
    • (1979) Invest Urol , vol.17 , pp. 16-23
    • Kaighn, M.E.1    Narayan, K.S.2    Ohnuki, Y.3    Lechner, J.F.4    Jones, L.W.5
  • 57
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S, Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol. 2000; 132:365-386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 58
    • 0001677717 scopus 로고
    • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    • Benjamini Y, Hochberg Y. Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. J R Stat Soc Ser B. 1995; 57:289-300.
    • (1995) J R Stat Soc Ser B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 59
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010; 26:841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 60
    • 24044522270 scopus 로고    scopus 로고
    • BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
    • Durinck S, Moreau Y, Kasprzyk A, Davis S, De Moor B, Brazma A, Huber W. BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics. 2005; 21:3439-3440.
    • (2005) Bioinformatics , vol.21 , pp. 3439-3440
    • Durinck, S.1    Moreau, Y.2    Kasprzyk, A.3    Davis, S.4    De Moor, B.5    Brazma, A.6    Huber, W.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.