메뉴 건너뛰기




Volumn 31, Issue 8, 2012, Pages 978-991

Diagnostic and prognostic signatures from the small non-coding RNA transcriptome in prostate cancer

Author keywords

deep sequencing; microarray; microRNA; prostate cancer; Q PCR; snoRNA

Indexed keywords

MICRORNA; SMALL NUCLEOLAR RIBONUCLEOPROTEIN; TRANSCRIPTOME; TRANSFER RNA; UNTRANSLATED RNA;

EID: 84857372726     PISSN: 09509232     EISSN: 14765594     Source Type: Journal    
DOI: 10.1038/onc.2011.304     Document Type: Article
Times cited : (225)

References (50)
  • 1
    • 51049123624 scopus 로고    scopus 로고
    • Genomic profiling of microRNA and messenger RNA reveals deregulated microRNA expression in prostate cancer
    • Ambs S, Prueitt RL, Yi M, Hudson RS, Howe TM, Petrocca F et al. (2008). Genomic profiling of microRNA and messenger RNA reveals deregulated microRNA expression in prostate cancer. Cancer Res 68: 6162-6170.
    • (2008) Cancer Res , vol.68 , pp. 6162-6170
    • Ambs, S.1    Prueitt, R.L.2    Yi, M.3    Hudson, R.S.4    Howe, T.M.5    Petrocca, F.6
  • 3
    • 59449107891 scopus 로고    scopus 로고
    • Targeted knockdown of Notch1 inhibits invasion of human prostate cancer cells concomitant with inhibition of matrix metalloproteinase-9 and urokinase plasminogen activator
    • Bin Hafeez B, Adhami VM, Asim M, Siddiqui IA, Bhat KM, Zhong W et al. (2009). Targeted knockdown of Notch1 inhibits invasion of human prostate cancer cells concomitant with inhibition of matrix metalloproteinase-9 and urokinase plasminogen activator. Clin Cancer Res 15: 452-459.
    • (2009) Clin Cancer Res , vol.15 , pp. 452-459
    • Bin Hafeez, B.1    Adhami, V.M.2    Asim, M.3    Siddiqui, I.A.4    Bhat, K.M.5    Zhong, W.6
  • 4
    • 79551499254 scopus 로고    scopus 로고
    • Human box C/D snoRNAs with miRNA like functions: Expanding the range of regulatory RNAs
    • Brameier M, Herwig A, Reinhardt R, Walter L, Gruber J. (2011). Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs. Nucleic Acids Res 39: 675-686.
    • (2011) Nucleic Acids Res , vol.39 , pp. 675-686
    • Brameier, M.1    Herwig, A.2    Reinhardt, R.3    Walter, L.4    Gruber, J.5
  • 9
    • 48549091046 scopus 로고    scopus 로고
    • Methylation mediated silencing of microRNA-1 gene and its role in hepatocellular carcinogenesis
    • Datta J, Kutay H, Nasser MW, Nuovo GJ, Wang B, Majumder S et al. (2008). Methylation mediated silencing of microRNA-1 gene and its role in hepatocellular carcinogenesis. Cancer Res 68: 5049-5058.
    • (2008) Cancer Res , vol.68 , pp. 5049-5058
    • Datta, J.1    Kutay, H.2    Nasser, M.W.3    Nuovo, G.J.4    Wang, B.5    Majumder, S.6
  • 10
    • 41149126821 scopus 로고    scopus 로고
    • SnoRNA U50 is a candidate tumor-suppressor gene at 6q14.3 with a mutation associated with clinically significant prostate cancer
    • Dong X-Y, Rodriguez C, Guo P, Sun X, Talbot JT, Zhou W et al. (2008). SnoRNA U50 is a candidate tumor-suppressor gene at 6q14.3 with a mutation associated with clinically significant prostate cancer. Hum Mol Genet 17: 1031 .
    • (2008) Hum Mol Genet , vol.17 , pp. 1031
    • Dong, X.-Y.1    Rodriguez, C.2    Guo, P.3    Sun, X.4    Talbot, J.T.5    Zhou, W.6
  • 12
    • 33847638137 scopus 로고    scopus 로고
    • Estimates of the cancer incidence and mortality in Europe in 2006
    • DOI 10.1093/annonc/mdl498
    • Ferlay J, Autier P, Boniol M, Heanue M, Colombet M, Boyle P. (2007). Estimates of the cancer incidence and mortality in Europe in 2006. Ann Oncol 18: 581-592. (Pubitemid 46359643)
    • (2007) Annals of Oncology , vol.18 , Issue.3 , pp. 581-592
    • Ferlay, J.1    Autier, P.2    Boniol, M.3    Heanue, M.4    Colombet, M.5    Boyle, P.6
  • 13
    • 65549115615 scopus 로고    scopus 로고
    • MiR-205 exerts tumor-suppressive functions in human prostate through down-regulation of protein kinase Cepsilon
    • Gandellini P, Folini M, Longoni N, Pennati M, Binda M, ColecchiaM et al. (2009). miR-205 exerts tumor-suppressive functions in human prostate through down-regulation of protein kinase Cepsilon. Cancer Res 69: 2287-2295.
    • (2009) Cancer Res , vol.69 , pp. 2287-2295
    • Gandellini, P.1    Folini, M.2    Longoni, N.3    Pennati, M.4    Binda, M.5    Colecchia, M.6
  • 14
    • 34548268220 scopus 로고    scopus 로고
    • Kip1 by miRNA 221/222 in glioblastoma
    • Gillies JK, Lorimer IAJ. (2007). Regulation of p27Kip1 by miRNA 221/222 in glioblastoma. Cell Cycle 6: 2005-2009. (Pubitemid 47327888)
    • (2007) Cell Cycle , vol.6 , Issue.16 , pp. 2005-2009
    • Gillies, J.K.1    Lorimer, I.A.J.2
  • 15
    • 77951190661 scopus 로고    scopus 로고
    • Systematic comparison of microarray profiling, realtime PCR, and next-generation sequencing technologies for measuring differential microRNA expression
    • Git A, Dvinge H, Salmon-Divon M, Osborne M, Kutter C, Hadfield J et al. (2010). Systematic comparison of microarray profiling, realtime PCR, and next-generation sequencing technologies for measuring differential microRNA expression. RNA 16: 991-1006.
    • (2010) RNA , vol.16 , pp. 991-1006
    • Git, A.1    Dvinge, H.2    Salmon-Divon, M.3    Osborne, M.4    Kutter, C.5    Hadfield, J.6
  • 16
    • 61849178049 scopus 로고    scopus 로고
    • Genome-wide profiling of histone h3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis
    • Ke XS, Qu Y, Rostad K, Li WC, Lin B, Halvorsen OJ et al. (2009). Genome-wide profiling of histone h3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis. PLoS One 4: e4687.
    • (2009) PLoS One , vol.4
    • Ke, X.S.1    Qu, Y.2    Rostad, K.3    Li, W.C.4    Lin, B.5    Halvorsen, O.J.6
  • 17
    • 30844442607 scopus 로고    scopus 로고
    • The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
    • DOI 10.1126/science.1118265
    • Kishore S, Stamm S. (2006). The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 311: 230-232. (Pubitemid 43108188)
    • (2006) Science , vol.311 , Issue.5758 , pp. 230-232
    • Kishore, S.1    Stamm, S.2
  • 20
    • 78650117232 scopus 로고    scopus 로고
    • MicroRNA-205-directed transcriptional activation of tumor suppressor genes in prostate cancer
    • Majid S, Dar AA, Saini S, Yamamura S, Hirata H, Tanaka Y et al. (2010). MicroRNA-205-directed transcriptional activation of tumor suppressor genes in prostate cancer. Cancer 116: 5637-5649.
    • (2010) Cancer , vol.116 , pp. 5637-5649
    • Majid, S.1    Dar, A.A.2    Saini, S.3    Yamamura, S.4    Hirata, H.5    Tanaka, Y.6
  • 21
    • 57049144758 scopus 로고    scopus 로고
    • Prostate cancer 2008: Challenges in diagnosis and management
    • Marberger M. (2009). Prostate cancer 2008: challenges in diagnosis and management. Eur Urol, Supplements 8: 89-96.
    • (2009) Eur Urol, Supplements , vol.8 , pp. 89-96
    • Marberger, M.1
  • 22
    • 56749170666 scopus 로고    scopus 로고
    • Non-coding RNA production by RNA polymerase III is implicated in cancer
    • Marshall L, White RJ. (2008). Non-coding RNA production by RNA polymerase III is implicated in cancer. Nat Rev Cancer 8: 911-914.
    • (2008) Nat Rev Cancer , vol.8 , pp. 911-914
    • Marshall, L.1    White, R.J.2
  • 26
    • 79958098599 scopus 로고    scopus 로고
    • Upregulation of MAPK pathway is associated with survival in castrate-resistant prostate cancer
    • Mukherjee R, McGuinness DH, McCall P, Underwood MA, Seywright M, Orange C et al. (2011). Upregulation of MAPK pathway is associated with survival in castrate-resistant prostate cancer. Br J Cancer 104: 1920-1928.
    • (2011) Br J Cancer , vol.104 , pp. 1920-1928
    • Mukherjee, R.1    McGuinness, D.H.2    McCall, P.3    Underwood, M.A.4    Seywright, M.5    Orange, C.6
  • 27
    • 40749090479 scopus 로고    scopus 로고
    • Widespread deregulation of microRNA expression in human prostate cancer
    • DOI 10.1038/sj.onc.1210809, PII 1210809
    • Ozen M, Creighton CJ, Ozdemir M, Ittmann M. (2008). Widespread deregulation of microRNA expression in human prostate cancer. Oncogene 27: 1788-1793. (Pubitemid 351380263)
    • (2008) Oncogene , vol.27 , Issue.12 , pp. 1788-1793
    • Ozen, M.1    Creighton, C.J.2    Ozdemir, M.3    Ittmann, M.4
  • 30
    • 48749099913 scopus 로고    scopus 로고
    • Expression of microRNAs and protein-coding genes associated with perineural invasion in prostate cancer
    • Prueitt RL, Yi M, Hudson RS, Wallace TA, Howe TM, Yfantis HG et al. (2008). Expression of microRNAs and protein-coding genes associated with perineural invasion in prostate cancer. Prostate 68: 1152-1164.
    • (2008) Prostate , vol.68 , pp. 1152-1164
    • Prueitt, R.L.1    Yi, M.2    Hudson, R.S.3    Wallace, T.A.4    Howe, T.M.5    Yfantis, H.G.6
  • 31
    • 0035991757 scopus 로고    scopus 로고
    • A paradigm for class prediction using gene expression profiles
    • DOI 10.1089/106652702760138592
    • Radmacher MD, McShane LM, Simon R. (2002). A paradigm for class prediction using gene expression profiles. J Comput Biol 9: 505-511. (Pubitemid 34920572)
    • (2002) Journal of Computational Biology , vol.9 , Issue.3 , pp. 505-511
    • Radmacher, M.D.1    McShane, L.M.2    Simon, R.3
  • 33
    • 70349750196 scopus 로고    scopus 로고
    • MiR-21: An androgen receptor-regulated microRNA that promotes hormone-dependent and hormone-independent prostate cancer growth
    • Ribas J, Ni X, Haffner M, Wentzel EA, Salmasi AH, Chowdhury WH et al. (2009). miR-21: an androgen receptor-regulated microRNA that promotes hormone-dependent and hormone-independent prostate cancer growth. Cancer Res 69: 7165-7169.
    • (2009) Cancer Res , vol.69 , pp. 7165-7169
    • Ribas, J.1    Ni, X.2    Haffner, M.3    Wentzel, E.A.4    Salmasi, A.H.5    Chowdhury, W.H.6
  • 35
    • 74049163692 scopus 로고    scopus 로고
    • Diagnostic and prognostic implications of microRNA profiling in prostate carcinoma
    • Schaefer A, Jung M, Mollenkopf H-J, Wagner I, Stephan C, Jentzmik F et al. (2010). Diagnostic and prognostic implications of microRNA profiling in prostate carcinoma. Int J Cancer 126: 1166-1176.
    • (2010) Int J Cancer , vol.126 , pp. 1166-1176
    • Schaefer, A.1    Jung, M.2    Mollenkopf, H.-J.3    Wagner, I.4    Stephan, C.5    Jentzmik, F.6
  • 36
    • 38049100559 scopus 로고    scopus 로고
    • An androgen-regulated miRNA suppresses Bak1 expression and induces androgen-independent growth of prostate cancer cells
    • Shi X-B, Xue L, Yang J, Ma A-H, Zhao J, Xu M et al. (2007). An androgen-regulated miRNA suppresses Bak1 expression and induces androgen-independent growth of prostate cancer cells. Proc Natl Acad Sci USA 104: 19983-19988.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 19983-19988
    • Shi, X.-B.1    Xue, L.2    Yang, J.3    Ma, A.-H.4    Zhao, J.5    Xu, M.6
  • 38
    • 77953723274 scopus 로고    scopus 로고
    • Expression of microRNA-221 is progressively reduced in aggressive prostate cancer and metastasis and predicts clinical recurrence
    • Spahn M, Kneitz S, Scholz CJ, Stenger N, Rudiger T, Strobel P et al. (2010). Expression of microRNA-221 is progressively reduced in aggressive prostate cancer and metastasis and predicts clinical recurrence. Int J Cancer 127: 394-403.
    • (2010) Int J Cancer , vol.127 , pp. 394-403
    • Spahn, M.1    Kneitz, S.2    Scholz, C.J.3    Stenger, N.4    Rudiger, T.5    Strobel, P.6
  • 39
    • 66049148777 scopus 로고    scopus 로고
    • The role of microRNA-221 and microRNA-222 in androgen-independent prostate cancer cell lines
    • Sun T, Wang Q, Balk S, Brown M, Lee GS, Kantoff P. (2009). The role of microRNA-221 and microRNA-222 in androgen-independent prostate cancer cell lines. Cancer Res 69: 3356-3363.
    • (2009) Cancer Res , vol.69 , pp. 3356-3363
    • Sun, T.1    Wang, Q.2    Balk, S.3    Brown, M.4    Lee, G.S.5    Kantoff, P.6
  • 45
    • 67649448828 scopus 로고    scopus 로고
    • MiR-145 inhibits breast cancer cell growth through RTKN
    • Wang S, Bian C, Yang Z, Bo Y, Li J, Zeng L et al. (2009). miR-145 inhibits breast cancer cell growth through RTKN. Int J Oncol 34: 1461-1466.
    • (2009) Int J Oncol , vol.34 , pp. 1461-1466
    • Wang, S.1    Bian, C.2    Yang, Z.3    Bo, Y.4    Li, J.5    Zeng, L.6
  • 46
    • 79551469293 scopus 로고    scopus 로고
    • Coordinated epigenetic repression of the miR-200 family and miR-205 in invasive bladder cancer
    • Wiklund ED, Bramsen JB, Hulf T, Dyrskjot L, Ramanathan R, Hansen TB et al. (2010). Coordinated epigenetic repression of the miR-200 family and miR-205 in invasive bladder cancer. Int J Cancer 128: 1327-1334.
    • (2010) Int J Cancer , vol.128 , pp. 1327-1334
    • Wiklund, E.D.1    Bramsen, J.B.2    Hulf, T.3    Dyrskjot, L.4    Ramanathan, R.5    Hansen, T.B.6
  • 47
    • 70350088369 scopus 로고    scopus 로고
    • Quantitative miRNA expression analysis: Comparing microarrays with next-generation sequencing
    • Willenbrock H, Salomon J, Sokilde R, Barken KB, Hansen TN, Nielsen FC et al. (2009). Quantitative miRNA expression analysis: comparing microarrays with next-generation sequencing. RNA 15: 2028-2034.
    • (2009) RNA , vol.15 , pp. 2028-2034
    • Willenbrock, H.1    Salomon, J.2    Sokilde, R.3    Barken, K.B.4    Hansen, T.N.5    Nielsen, F.C.6
  • 48
    • 70350705948 scopus 로고    scopus 로고
    • Repertoire and evolution of miRNA genes in four divergent nematode species
    • Wit E, Linsen SEV, Cuppen E, Berezikov E. (2009). Repertoire and evolution of miRNA genes in four divergent nematode species. Genome Res 19: 2064-2074.
    • (2009) Genome Res , vol.19 , pp. 2064-2074
    • Wit, E.1    Linsen, S.E.V.2    Cuppen, E.3    Berezikov, E.4
  • 49
    • 0348143180 scopus 로고    scopus 로고
    • A random variance model for detection of differential gene expression in small microarray experiments
    • DOI 10.1093/bioinformatics/btg345
    • Wright GW, Simon RM. (2003). A random variance model for detection of differential gene expression in small microarray experiments. Bioinformatics 19: 2448-2455. (Pubitemid 38016644)
    • (2003) Bioinformatics , vol.19 , Issue.18 , pp. 2448-2455
    • Wright, G.W.1    Simon, R.M.2
  • 50
    • 57649174634 scopus 로고    scopus 로고
    • MicroRNA-221/222 negatively regulates estrogen receptor{alpha} and is associated with tamoxifen resistance in breast cancer
    • Zhao J-J, Lin J, Yang H, Kong W, He L, Ma X et al. (2008). MicroRNA-221/222 negatively regulates estrogen receptor{alpha} and is associated with tamoxifen resistance in breast cancer. J Biol Chem 283: 31079-31086.
    • (2008) J Biol Chem , vol.283 , pp. 31079-31086
    • Zhao, J.-J.1    Lin, J.2    Yang, H.3    Kong, W.4    He, L.5    Ma, X.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.