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Volumn 67, Issue 12, 2007, Pages 5635-5642

Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BRAIN TUMOR; CONTROLLED STUDY; DISEASE COURSE; GENE EXPRESSION PROFILING; GLIAL BRAIN TUMOR; GLIOBLASTOMA; HISTOPATHOLOGY; HUMAN; HUMAN TISSUE; MAJOR CLINICAL STUDY; OLIGODENDROGLIOMA; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

EID: 34250795169     PISSN: 00085472     EISSN: None     Source Type: Journal    
DOI: 10.1158/0008-5472.CAN-06-2869     Document Type: Article
Times cited : (75)

References (44)
  • 1
    • 0033581097 scopus 로고    scopus 로고
    • Cancer surveillance series [corrected]: Brain and other central nervous system cancers: recent trends in incidence and mortality
    • Legler JM, Ries LA, Smith MA, et al. Cancer surveillance series [corrected]: brain and other central nervous system cancers: recent trends in incidence and mortality. J Natl Cancer Inst 1999;91:1382-90.
    • (1999) J Natl Cancer Inst , vol.91 , pp. 1382-1390
    • Legler, J.M.1    Ries, L.A.2    Smith, M.A.3
  • 2
    • 1042289698 scopus 로고    scopus 로고
    • New frontiers in the treatment of malignant glioma
    • Macdonald DR. New frontiers in the treatment of malignant glioma. Semin Oncol 2003;30:72-6.
    • (2003) Semin Oncol , vol.30 , pp. 72-76
    • Macdonald, D.R.1
  • 4
    • 20044372154 scopus 로고    scopus 로고
    • MGMT gene silencing and benefit from temozolomide in glioblastoma
    • Hegi ME, Diserens AC, Gorlia T, et al. MGMT gene silencing and benefit from temozolomide in glioblastoma. N Engl J Med 2005;352:997-1003.
    • (2005) N Engl J Med , vol.352 , pp. 997-1003
    • Hegi, M.E.1    Diserens, A.C.2    Gorlia, T.3
  • 5
    • 14244265590 scopus 로고    scopus 로고
    • Epidemiology and etiology of gliomas
    • Ohgaki H, Kleihues P. Epidemiology and etiology of gliomas. Acta Neuropathol Berl 2005;109:93-108.
    • (2005) Acta Neuropathol Berl , vol.109 , pp. 93-108
    • Ohgaki, H.1    Kleihues, P.2
  • 6
    • 0034906754 scopus 로고    scopus 로고
    • Alternative RNA splicing in the nervous system
    • Grabowski PJ, Black DL. Alternative RNA splicing in the nervous system. Prog Neurobiol 2001;65:289-308.
    • (2001) Prog Neurobiol , vol.65 , pp. 289-308
    • Grabowski, P.J.1    Black, D.L.2
  • 7
    • 0035142469 scopus 로고    scopus 로고
    • Aberrant receptor signaling in human malignant gliomas: Mechanisms and therapeutic implications
    • Nagane M, Lin H, Cavenee WK, Huang HJ. Aberrant receptor signaling in human malignant gliomas: mechanisms and therapeutic implications. Cancer Lett 2001;162 Suppl:S17-21.
    • (2001) Cancer Lett , vol.162 , Issue.SUPPL.
    • Nagane, M.1    Lin, H.2    Cavenee, W.K.3    Huang, H.J.4
  • 9
    • 27744606737 scopus 로고    scopus 로고
    • Molecular determinants of the response of glioblastomas to EGFR kinase inhibitors
    • Mellinghoff IK, Wang MY, Vivanco I, et al. Molecular determinants of the response of glioblastomas to EGFR kinase inhibitors. N Engl J Med 2005;353:2012-24.
    • (2005) N Engl J Med , vol.353 , pp. 2012-2024
    • Mellinghoff, I.K.1    Wang, M.Y.2    Vivanco, I.3
  • 10
    • 0034163550 scopus 로고    scopus 로고
    • Diversity and frequency of epidermal growth factor receptor mutations in human glioblastomas
    • Frederick L, Wang XY, Eley G, James CD. Diversity and frequency of epidermal growth factor receptor mutations in human glioblastomas. Cancer Res 2000;60:1383-7.
    • (2000) Cancer Res , vol.60 , pp. 1383-1387
    • Frederick, L.1    Wang, X.Y.2    Eley, G.3    James, C.D.4
  • 11
    • 0027196278 scopus 로고
    • Control of fibroblast growth factor receptor kinase signal transduction by heterodimerization of combinatorial splice variants
    • Shi E, Kan M, Xu J, Wang F, Hou J, McKeehan WL. Control of fibroblast growth factor receptor kinase signal transduction by heterodimerization of combinatorial splice variants. Mol Cell Biol 1993;13:3907-18.
    • (1993) Mol Cell Biol , vol.13 , pp. 3907-3918
    • Shi, E.1    Kan, M.2    Xu, J.3    Wang, F.4    Hou, J.5    McKeehan, W.L.6
  • 12
    • 0028986809 scopus 로고
    • Alternately spliced NH2-terminal immunoglobulin-like Loop I in the ectodomain of the fibroblast growth factor (FGF) receptor 1 lowers affinity for both heparin and FGF-1
    • Wang F, Kan M, Yan G, Xu J, McKeehan WL. Alternately spliced NH2-terminal immunoglobulin-like Loop I in the ectodomain of the fibroblast growth factor (FGF) receptor 1 lowers affinity for both heparin and FGF-1. J Biol Chem 1995;270:10231-5.
    • (1995) J Biol Chem , vol.270 , pp. 10231-10235
    • Wang, F.1    Kan, M.2    Yan, G.3    Xu, J.4    McKeehan, W.L.5
  • 13
  • 14
    • 0034892394 scopus 로고    scopus 로고
    • Alternative splicing of the p15 cdk inhibitor in glioblastoma multiforme
    • Simon M, Koster G, Ludwig M, et al. Alternative splicing of the p15 cdk inhibitor in glioblastoma multiforme. Acta Neuropathol Berl 2001;102:167-74.
    • (2001) Acta Neuropathol Berl , vol.102 , pp. 167-174
    • Simon, M.1    Koster, G.2    Ludwig, M.3
  • 15
    • 19444367882 scopus 로고    scopus 로고
    • Detection of somatic TP53 splice site mutations in diffuse astrocytomas
    • Uno M, Oba-Shinjo SM, de Aguiar PH, et al. Detection of somatic TP53 splice site mutations in diffuse astrocytomas. Cancer Lett 2005;224:321-7.
    • (2005) Cancer Lett , vol.224 , pp. 321-327
    • Uno, M.1    Oba-Shinjo, S.M.2    de Aguiar, P.H.3
  • 16
    • 0035964473 scopus 로고    scopus 로고
    • Expression of multiple larger-sized transcripts for several genes in oligodendrogliomas: Potential markers for glioma subtype
    • Xu X, Joh HD, Pin S, et al. Expression of multiple larger-sized transcripts for several genes in oligodendrogliomas: potential markers for glioma subtype. Cancer Lett 2001;171:67-77.
    • (2001) Cancer Lett , vol.171 , pp. 67-77
    • Xu, X.1    Joh, H.D.2    Pin, S.3
  • 17
    • 2442551589 scopus 로고    scopus 로고
    • Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment
    • Hui L, Zhang X, Wu X, et al. Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment. Oncogene 2004;23:3013-23.
    • (2004) Oncogene , vol.23 , pp. 3013-3023
    • Hui, L.1    Zhang, X.2    Wu, X.3
  • 18
    • 29244472476 scopus 로고    scopus 로고
    • Gene expression profiles associated with treatment response in oligodendrogliomas
    • French PJ, Swagemakers SMA, Nagel JHA, et al. Gene expression profiles associated with treatment response in oligodendrogliomas. Cancer Res 2005;65:11335-44.
    • (2005) Cancer Res , vol.65 , pp. 11335-11344
    • French, P.J.1    Swagemakers, S.M.A.2    Nagel, J.H.A.3
  • 19
    • 33645241407 scopus 로고    scopus 로고
    • The RIN: An RNA integrity number for assigning integrity values to RNA measurements
    • Schroeder A, Mueller O, Stocker S, et al. The RIN: an RNA integrity number for assigning integrity values to RNA measurements. BMC Mol Biol 2006;7:3.
    • (2006) BMC Mol Biol , vol.7 , pp. 3
    • Schroeder, A.1    Mueller, O.2    Stocker, S.3
  • 20
    • 11144358111 scopus 로고    scopus 로고
    • Prognostically useful gene-expression profiles in acute myeloid leukemia
    • Valk PJ, Verhaak RG, Beijen MA, et al. Prognostically useful gene-expression profiles in acute myeloid leukemia. N Engl J Med 2004;350:1617-28.
    • (2004) N Engl J Med , vol.350 , pp. 1617-1628
    • Valk, P.J.1    Verhaak, R.G.2    Beijen, M.A.3
  • 21
    • 5044224775 scopus 로고    scopus 로고
    • DNA-micro-array analysis of brain cancer: Molecular classification for therapy
    • Mischel PS, Cloughesy TF, Nelson SF. DNA-micro-array analysis of brain cancer: molecular classification for therapy. Nat Rev Neurosci 2004;5:782-92.
    • (2004) Nat Rev Neurosci , vol.5 , pp. 782-792
    • Mischel, P.S.1    Cloughesy, T.F.2    Nelson, S.F.3
  • 22
    • 0035884608 scopus 로고    scopus 로고
    • Distinctive molecular profiles of high-grade and low-grade gliomas based on oligonucleotide microarray analysis
    • Rickman DS, Bobek MP, Misek DE, et al. Distinctive molecular profiles of high-grade and low-grade gliomas based on oligonucleotide microarray analysis. Cancer Res 2001;61:6885-91.
    • (2001) Cancer Res , vol.61 , pp. 6885-6891
    • Rickman, D.S.1    Bobek, M.P.2    Misek, D.E.3
  • 23
    • 0142157702 scopus 로고    scopus 로고
    • Classification of human astrocytic gliomas on the basis of gene expression: A correlated group of genes with angiogenic activity emerges as a strong predictor of subtypes
    • Godard S, Getz G, Delorenzi M, et al. Classification of human astrocytic gliomas on the basis of gene expression: a correlated group of genes with angiogenic activity emerges as a strong predictor of subtypes. Cancer Res 2003;63:6613-25.
    • (2003) Cancer Res , vol.63 , pp. 6613-6625
    • Godard, S.1    Getz, G.2    Delorenzi, M.3
  • 24
    • 0037381008 scopus 로고    scopus 로고
    • Gene expression-based classification of malignant gliomas correlates better with survival than histological classification
    • Nutt CL, Mani DR, Betensky RA, et al. Gene expression-based classification of malignant gliomas correlates better with survival than histological classification. Cancer Res 2003;63:1602-7.
    • (2003) Cancer Res , vol.63 , pp. 1602-1607
    • Nutt, C.L.1    Mani, D.R.2    Betensky, R.A.3
  • 25
    • 4644313275 scopus 로고    scopus 로고
    • Gene expression profiling of gliomas strongly predicts survival
    • Freije WA, Castro-Vargas FE, Fang Z, et al. Gene expression profiling of gliomas strongly predicts survival. Cancer Res 2004;64:6503-10.
    • (2004) Cancer Res , vol.64 , pp. 6503-6510
    • Freije, W.A.1    Castro-Vargas, F.E.2    Fang, Z.3
  • 26
    • 20244387732 scopus 로고    scopus 로고
    • Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme
    • Liang Y, Diehn M, Watson N, et al. Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme. Proc Natl Acad Sci U S A 2005;102:5814-9.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 5814-5819
    • Liang, Y.1    Diehn, M.2    Watson, N.3
  • 27
    • 33644820339 scopus 로고    scopus 로고
    • Molecular subclasses of high-grade glioma predict prognosis, delineate a pattern of disease progression, and resemble stages in neurogenesis
    • Phillips HS, Kharbanda S, Chen R, et al. Molecular subclasses of high-grade glioma predict prognosis, delineate a pattern of disease progression, and resemble stages in neurogenesis. Cancer Cell 2006;9:157-73.
    • (2006) Cancer Cell , vol.9 , pp. 157-173
    • Phillips, H.S.1    Kharbanda, S.2    Chen, R.3
  • 28
    • 23044431574 scopus 로고    scopus 로고
    • Nova regulates brain-specific splicing to shape the synapse
    • Ule J, Ule A, Spencer J, et al. Nova regulates brain-specific splicing to shape the synapse. Nat Genet 2005;37:844-52.
    • (2005) Nat Genet , vol.37 , pp. 844-852
    • Ule, J.1    Ule, A.2    Spencer, J.3
  • 29
    • 0036712421 scopus 로고    scopus 로고
    • Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
    • Xu Q, Modrek B, Lee C. Genome-wide detection of tissue-specific alternative splicing in the human transcriptome. Nucleic Acids Res 2002;30:3754-66.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3754-3766
    • Xu, Q.1    Modrek, B.2    Lee, C.3
  • 30
    • 10944229314 scopus 로고    scopus 로고
    • Variation in alternative splicing across human tissues
    • Yeo G, Holste D, Kreiman G, Burge CB. Variation in alternative splicing across human tissues. Genome Biol 2004;5:R74.
    • (2004) Genome Biol , vol.5
    • Yeo, G.1    Holste, D.2    Kreiman, G.3    Burge, C.B.4
  • 31
    • 19944365069 scopus 로고    scopus 로고
    • Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform
    • Pan Q, Shai O, Misquitta C, et al. Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform. Mol Cell 2004;16:929-41.
    • (2004) Mol Cell , vol.16 , pp. 929-941
    • Pan, Q.1    Shai, O.2    Misquitta, C.3
  • 32
    • 0013394889 scopus 로고    scopus 로고
    • Mechanisms of alternative pre-messenger RNA splicing
    • Black DL. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 2003;72:291-336.
    • (2003) Annu Rev Biochem , vol.72 , pp. 291-336
    • Black, D.L.1
  • 34
    • 0033835333 scopus 로고    scopus 로고
    • Sorting out the complexity of SR protein functions
    • Graveley BR. Sorting out the complexity of SR protein functions. RNA 2000;6:1197-211.
    • (2000) RNA , vol.6 , pp. 1197-1211
    • Graveley, B.R.1
  • 35
    • 0034231944 scopus 로고    scopus 로고
    • Analysis of genomic rearrangements associated with EGRFvIII expression suggests involvement of Alu repeat elements
    • Frederick L, Eley G, Wang XY, James CD. Analysis of genomic rearrangements associated with EGRFvIII expression suggests involvement of Alu repeat elements. Neuro-oncol 2000;2:159-63.
    • (2000) Neuro-oncol , vol.2 , pp. 159-163
    • Frederick, L.1    Eley, G.2    Wang, X.Y.3    James, C.D.4
  • 36
    • 0347623371 scopus 로고    scopus 로고
    • Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
    • Johnson JM, Castle J, Garrett-Engele P, et al. Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science 2003;302:2141-4.
    • (2003) Science , vol.302 , pp. 2141-2144
    • Johnson, J.M.1    Castle, J.2    Garrett-Engele, P.3
  • 37
    • 0036215612 scopus 로고    scopus 로고
    • Profiling alternative splicing on fiber-optic arrays
    • Yeakley JM, Fan JB, Doucet D, et al. Profiling alternative splicing on fiber-optic arrays. Nat Biotechnol 2002;20:353-8.
    • (2002) Nat Biotechnol , vol.20 , pp. 353-358
    • Yeakley, J.M.1    Fan, J.B.2    Doucet, D.3
  • 38
    • 0042528668 scopus 로고    scopus 로고
    • Single molecule profiling of alternative pre-mRNA splicing
    • Zhu J, Shendure J, Mitra RD, Church GM. Single molecule profiling of alternative pre-mRNA splicing. Science 2003;301:836-8.
    • (2003) Science , vol.301 , pp. 836-838
    • Zhu, J.1    Shendure, J.2    Mitra, R.D.3    Church, G.M.4
  • 39
    • 26444502673 scopus 로고    scopus 로고
    • A microarray configuration to quantify expression levels and relative abundance of splice variants
    • Fehlbaum P, Guihal C, Bracco L, Cochet O. A microarray configuration to quantify expression levels and relative abundance of splice variants. Nucleic Acids Res 2005;33:e47.
    • (2005) Nucleic Acids Res , vol.33
    • Fehlbaum, P.1    Guihal, C.2    Bracco, L.3    Cochet, O.4
  • 40
    • 27944431759 scopus 로고    scopus 로고
    • Detecting tissue-specific alternative splicing and disease-associated aberrant splicing of the PTCH gene with exon junction microarrays
    • Nagao K, Togawa N, Fujii K, et al. Detecting tissue-specific alternative splicing and disease-associated aberrant splicing of the PTCH gene with exon junction microarrays. Hum Mol Genet 2005;14:3379-88.
    • (2005) Hum Mol Genet , vol.14 , pp. 3379-3388
    • Nagao, K.1    Togawa, N.2    Fujii, K.3
  • 41
    • 11144353631 scopus 로고    scopus 로고
    • Differential amplification of intron-containing transcripts reveals long term potentiation-associated up-regulation of specific Pde10A phosphodiesterase splice variants
    • O'Connor V, Genin A, Davis S, et al. Differential amplification of intron-containing transcripts reveals long term potentiation-associated up-regulation of specific Pde10A phosphodiesterase splice variants. J Biol Chem 2004;279:15841-9.
    • (2004) J Biol Chem , vol.279 , pp. 15841-15849
    • O'Connor, V.1    Genin, A.2    Davis, S.3
  • 42
    • 33745106263 scopus 로고    scopus 로고
    • Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat
    • Chen FC, Chen CJ, Ho JY, Chuang TJ. Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat. BMC Bioinformatics 2006;7:136.
    • (2006) BMC Bioinformatics , vol.7 , pp. 136
    • Chen, F.C.1    Chen, C.J.2    Ho, J.Y.3    Chuang, T.J.4
  • 43
    • 12144263837 scopus 로고    scopus 로고
    • Identification of novel exons from rat-mouse comparisons
    • Nekrutenko A. Identification of novel exons from rat-mouse comparisons. J Mol Evol 2004;59:703-8.
    • (2004) J Mol Evol , vol.59 , pp. 703-708
    • Nekrutenko, A.1
  • 44
    • 25144450883 scopus 로고    scopus 로고
    • Genomewide analysis of mouse transcripts using exon microarrays and factor graphs
    • Frey BJ, Mohammad N, Morris QD, et al. Genomewide analysis of mouse transcripts using exon microarrays and factor graphs. Nat Genet 2005;37:991-6.
    • (2005) Nat Genet , vol.37 , pp. 991-996
    • Frey, B.J.1    Mohammad, N.2    Morris, Q.D.3


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