메뉴 건너뛰기




Volumn 9, Issue 7, 2000, Pages 935-948

Microdiversity of uncultured marine prokaryotes: The SAR11 cluster and the marine Archaea of Group I

Author keywords

16S rDNA; 16S 23S rDNA spacer; Marine archaea; Marine assemblages; Microbial diversity; SAR11

Indexed keywords

ANTARCTIC OCEAN; GEOGRAPHIC DISTRIBUTION; INTERNAL TRANSCRIBED SPACER; MARINE ENVIRONMENT; MICROORGANISM DIVERSITY; PROKARYOTE; RIBOSOMAL RNA;

EID: 0033929777     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2000.00953.x     Document Type: Article
Times cited : (130)

References (62)
  • 2
    • 0342506808 scopus 로고    scopus 로고
    • Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA
    • Acinas SG, Rodriguez-Valera F, Pedrôs-Aliô C (1997) Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA. FEMS Microbiology Ecology, 24,27-40.
    • (1997) FEMS Microbiology Ecology , pp. 27-40
    • Acinas, S.G.1    Rodriguez-Valera, F.2    Pedrôs-Aliô, C.3
  • 3
    • 0032974993 scopus 로고    scopus 로고
    • Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 165 rDNA
    • Acinas SG, Anton J, Rodríguez-Valera F (1999) Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 165 rDNA. Applied and Environmental Microbiology, 65,514-522.
    • (1999) Applied and Environmental Microbiology , pp. 514-522
    • Acinas, S.G.1    Anton, J.2    Rodríguez-Valera, F.3
  • 4
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schäffer AA et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25,3389-3402.
    • (1997) Nucleic Acids Research , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schäffer, A.A.3
  • 5
    • 0031780508 scopus 로고    scopus 로고
    • Sequence diversity in the 16S-23S intergenic spacer region (ISR) of the rRNA opérons in representatives of the Escherichia coli ECOR collection
    • Anton AI, Martînez-Murda AJ, Rodriguez-Valera F (1998) Sequence diversity in the 16S-23S intergenic spacer region (ISR) of the rRNA opérons in representatives of the Escherichia coli ECOR collection. Journal of Molecular Evolution, 47,62-72.
    • (1998) Journal of Molecular Evolution , pp. 62-72
    • Anton, A.I.1    Martînez-Murda, A.J.2    Rodriguez-Valera, F.3
  • 6
    • 0030044532 scopus 로고    scopus 로고
    • Phylogenetic relationships among Rlrizobium species nodulating the common bean (Pliascolus vulgaris.)
    • van Berkum P, Beyene D, Hardly BD (1996) Phylogenetic relationships among Rlrizobium species nodulating the common bean (Pliascolus vulgaris.). International Journal of Systematic Bacteriology, 46,240-244.
    • (1996) International Journal of Systematic Bacteriology , pp. 240-244
    • Berkum, P.1    Beyene, D.2    Hardly, B.D.3
  • 7
    • 0031943928 scopus 로고    scopus 로고
    • Rliizobium mongolense sp. nov., is one of three rhizobial genotypes identified which nodulate and form nitrogen-fixing symbioses with Medicago ruthenica
    • van Berkum P, Beyene D, Bao G, Campbell AT, Hardly BD (1998) Rliizobium mongolense sp. nov., is one of three rhizobial genotypes identified which nodulate and form nitrogen-fixing symbioses with Medicago ruthenica. International Journal of Systematic Bacteriology, 48,13-22.
    • (1998) International Journal of Systematic Bacteriology , pp. 13-22
    • Berkum, P.1    Beyene, D.2    Bao, G.3    Campbell, A.T.4    Hardly, B.D.5
  • 9
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from Eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated wth deforestation
    • Borneman J, Triplett EVV (1997) Molecular microbial diversity in soils from Eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated wth deforestation. Applied and Environmental Microbiology, 63,2647-2653.
    • (1997) Applied and Environmental Microbiology , pp. 2647-2653
    • Borneman, J.1    Evv, T.2
  • 11
    • 0028594902 scopus 로고
    • High abundance of Archaea in Antarctic marine picoplankton
    • DeLong EF, Wu KY, Prézelin BB, Jovine RV (1994) High abundance of Archaea in Antarctic marine picoplankton. Nature, 371, 695-697.
    • (1994) Nature , vol.371 , pp. 695-697
    • Delong, E.F.1    Wu, K.Y.2    Prézelin, B.B.3    Jovine, R.V.4
  • 12
    • 0031027068 scopus 로고    scopus 로고
    • Diversity and depthspecific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria
    • Field KG, Gordon D, Wright T et al. (1997) Diversity and depthspecific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria. Applied and Environmental Microbiology, 63, 63-70.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 63-70
    • Field, K.G.1    Gordon, D.2    Et Al, W.T.3
  • 14
    • 0030619262 scopus 로고    scopus 로고
    • Widespread Archaea and novel bacteria from the deep sea as shown by rRNA gene sequences
    • Fuhrman JA, Davis AA (1997) Widespread Archaea and novel bacteria from the deep sea as shown by rRNA gene sequences. Marine Ecology Progress Series, 150,275-285.
    • (1997) Marine Ecology Progress Series , pp. 275-285
    • Fuhrman, J.A.1    Davis, A.A.2
  • 15
    • 0032482354 scopus 로고    scopus 로고
    • Microbial microdiversity
    • Fuhrman JA, Campbell L (1998) Microbial microdiversity. Nature, 393,410-411.
    • (1998) Nature , pp. 410-411
    • Fuhrman, J.A.1    Campbell, L.2
  • 16
    • 0032471178 scopus 로고    scopus 로고
    • Marine microbial diversity studied via 16S rRNA sequences: Cloning results from coastal waters and counting of native archaea with fluorescent single cell probes
    • Fuhrman JA, Ouverney CC (1998) Marine microbial diversity studied via 16S rRNA sequences: cloning results from coastal waters and counting of native archaea with fluorescent single cell probes. Aquatic Ecology, 32,3-15.
    • (1998) Aquatic Ecology , pp. 3-15
    • Fuhrman, J.A.1    Ouverney, C.C.2
  • 17
    • 0000615869 scopus 로고
    • Extraction from natural planktonic microorganisms of DNA suitable for molecular biological studies
    • Fuhrman JA, Comeau DE, Hagström A, Chan AM (1988) Extraction from natural planktonic microorganisms of DNA suitable for molecular biological studies. Applied and Environmental Microbiology, 54,1426-1429.
    • (1988) Applied and Environmental Microbiology , pp. 1426-1429
    • Fuhrman, J.A.1    De Comeau2    Hagström, A.3    Chan, A.M.4
  • 18
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman JA, McCallum K, Davis AA (1992) Novel major archaebacterial group from marine plankton. Nature, 356,148-149.
    • (1992) Nature , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 22
    • 0030054296 scopus 로고    scopus 로고
    • New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region
    • Gürtler V, Stanisich VA (1996) New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology, 142,3-16.
    • (1996) Microbiology , pp. 3-16
    • Gürtler, V.1    Stanisich, V.A.2
  • 24
    • 0029020116 scopus 로고
    • Transfer of Acidipltilium facilis and Addiphilium aminolytica to the genus Acidocellci gen. nov. and emendation of the genus Addiphilium
    • Kishimoto N, Kosako Y, Wakao N, Tano T, Hiraishi A (1995) Transfer of Acidipltilium facilis and Addiphilium aminolytica to the genus Acidocellci gen. nov. and emendation of the genus Addiphilium. Systematic and Applied Microbiology, 18,85-91.
    • (1995) Systematic and Applied Microbiology , pp. 85-91
    • Kishimoto, N.1    Kosako, Y.2    Wakao, N.3    Tano, T.4    Hiraishi, A.5
  • 25
    • 0028834732 scopus 로고
    • Characterization of the 16S ribosomal RNA genes and phylogenetic relationships of sulfur-dependent thermoacidophilic archaebacteria
    • Kurosawa N, Ohkura K, Horiuchi T, Itoh YH (1995) Characterization of the 16S ribosomal RNA genes and phylogenetic relationships of sulfur-dependent thermoacidophilic archaebacteria. Journal of General and Applied Microbiology, 41,75-81.
    • (1995) Journal of General and Applied Microbiology , pp. 75-81
    • Kurosawa, N.1    Ohkura, K.2    Horiuchi, T.3    Itoh, Y.H.4
  • 26
    • 0023644758 scopus 로고
    • Evolutionary relationships among Archaebacteria
    • Leffers H, Kjems J, Ostergaard L, Larsen N, Garret RA (1987) Evolutionary relationships among Archaebacteria. A comparative study of 23S rRNAs of a sulphur-dependent thermophile, an extreme halophile and a thermophilic methanogen. Journal of Molecular Biology, 195,43-61.
    • (1987) A Comparative Study of , vol.23 , pp. 43-61
    • Leffers, H.1    Kjems, J.2    Ostergaard, L.3    Larsen, N.4    Garret, R.A.5
  • 27
    • 0030854739 scopus 로고    scopus 로고
    • RNA genes in genomic sequence
    • Lowe T, Eddy SR (1997) trnascan-se: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Research, 25,955-964.
    • (1997) Nucleic Acids Research , pp. 955-964
    • Lowe, T.1    Eddy, S.R.2
  • 29
    • 15144358617 scopus 로고    scopus 로고
    • Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies
    • Luz SP, Rodriguez-Valera F, Lan R, Reeves PR (1998) Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies. Journal of Bacteriology, 180,2144-2151.
    • (1998) Journal of Bacteriology , pp. 2144-2151
    • Luz, S.P.1    Rodriguez-Valera, F.2    Lan, R.3    Reeves, P.R.4
  • 31
    • 0030620440 scopus 로고    scopus 로고
    • Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara channel
    • Massana R,.Murray AE, Preston CM, DeLong EF (1997) Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara channel. Applied and Environmental Microbiology, 63,50-56.
    • (1997) Applied and Environmental Microbiology , pp. 50-56
    • Massana, R.1    Murray, A.E.2    Preston, C.M.3    Delong, E.F.4
  • 32
    • 0031855794 scopus 로고    scopus 로고
    • Vertical distribution and temporal variation of marine planktonic Archaea in the Gerlache strait, Antarctica, during early spring
    • Massana R, Taylor LT, Murray AE et al. (1998) Vertical distribution and temporal variation of marine planktonic Archaea in the Gerlache strait, Antarctica, during early spring. Limnology and Oceanography, 43,607-617.
    • (1998) Limnology and Oceanography , pp. 607-617
    • Massana, R.1    Taylor, L.T.2
  • 33
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews DH, Sabina J, Zuker M, Turner DH (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. Journal of Molecular Biology, 288,911-940.
    • (1999) Journal of Molecular Biology , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 34
    • 0038111519 scopus 로고
    • Can molecular techniques change our ideas about the species concept? In: Molecular Ecology ofAtjuatic Microbes ed
    • Mediin LK, Lange M, Barker GL, Hayes PK (1995) Can molecular techniques change our ideas about the species concept? In: Molecular Ecology ofAtjuatic Microbes (ed. Joint I), Vol. G 38, pp. 133-152. Springer-Verlag, Berlin Heidelbert.
    • (1995) Joint I, Vol. G , vol.38 , pp. 133-152
    • Mediin, L.K.1    Lange, M.2    Barker, G.L.3    Hayes, P.K.4
  • 35
    • 0032482462 scopus 로고    scopus 로고
    • Physiology and molecular phylogeny of coexisting Prochlorococciis ecotypes
    • Moore LR, Rocap G, Chisholm SVV (1998) Physiology and molecular phylogeny of coexisting Prochlorococciis ecotypes. Nature, 393,464.
    • (1998) Nature , pp. 393-464
    • Moore, L.R.1    Rocap, G.2    Svv, C.3
  • 36
    • 0031814110 scopus 로고    scopus 로고
    • Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers island, Antarctica
    • Murray AE, Preston CM, Massana R et al. (1998) Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers island, Antarctica. Applied and Environmental Microbiology, 64,2585-2595.
    • (1998) Applied and Environmental Microbiology , pp. 2585-2595
    • Murray, A.E.1    Preston, C.M.2    Massana, R.3
  • 38
    • 0029780262 scopus 로고    scopus 로고
    • Major differences between the rRNA opérons of two strains of Agrobacterium vitis
    • Otten L, De Ruffray P (1996) Major differences between the rRNA opérons of two strains of Agrobacterium vitis. Archives of Microbiology, 166,68-70.
    • (1996) Archives of Microbiology , pp. 68-70
    • Otten, L.1    De Ruffray, P.2
  • 40
    • 0030805150 scopus 로고    scopus 로고
    • Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCRamplified gene fragments coding for 16S rRNA
    • Ovreas L, Forney L, Daae FL, Torsvik V (1997) Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCRamplified gene fragments coding for 16S rRNA. Applied and Environmental Microbiology, 63,3367-3373.
    • (1997) Applied and Environmental Microbiology , pp. 3367-3373
    • Ovreas, L.1    Forney, L.2    Daae, F.L.3    Torsvik, V.4
  • 41
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace NR (1997) A molecular view of microbial diversity and the biosphere. Science, 276,734-740.
    • (1997) Science , pp. 734-740
    • Pace, N.R.1
  • 42
    • 0030870289 scopus 로고    scopus 로고
    • Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data
    • Palys T, Nakamura LK, Cohan FM (1997) Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. International Journal of Systematic Bacteriology, 47,1145-1156.
    • (1997) International Journal of Systematic Bacteriology , pp. 1145-1156
    • Palys, T.1    Nakamura, L.K.2    Cohan, F.M.3
  • 45
    • 0031974203 scopus 로고    scopus 로고
    • Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences
    • Roth A, Fischer M, Hamid ME et al. (1998) Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences. Journal of Clinical Microbiology, 36,139-147.
    • (1998) Journal of Clinical Microbiology , pp. 139-147
    • Roth, A.1    Fischer, M.2
  • 47
    • 0027495405 scopus 로고
    • Proposal for rejection of Agrobacterium ttimefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium radiobacter and Agrobacterium rhizogenes
    • Sawada H, leki H, Oyaizu H, Matsumoto S (1993) Proposal for rejection of Agrobacterium ttimefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium radiobacter and Agrobacterium rhizogenes. International Journal of Systematic Bacteriology, 43,694-702.
    • (1993) International Journal of Systematic Bacteriology , pp. 694-702
    • Sawada, H.1    Leki, H.2    Oyaizu, H.3    Matsumoto, S.4
  • 48
    • 0031680049 scopus 로고    scopus 로고
    • Genomic analysis reveals chromosomal variation in natural populations of the uncultured psycrophilic archaeon Cenarcliaeum symbiosum
    • Schleper C, DeLong EF, Preston CM et al. (1998) Genomic analysis reveals chromosomal variation in natural populations of the uncultured psycrophilic archaeon Cenarcliaeum symbiosum. Journal of Bacteriology, 180,5003-5009.
    • (1998) Journal of Bacteriology , pp. 5003-5009
    • Schleper, C.1    Delong, E.F.2
  • 49
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt TM, DeLong EF, Pace NR (1991) Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. Journal of Bacteriology, 173,4371-4378.
    • (1991) Journal of Bacteriology , pp. 4371-4378
    • Schmidt, T.M.1    Delong, E.F.2    Pace, N.R.3
  • 51
    • 0028049020 scopus 로고
    • Phylogenetic positioning of Acetobacter, Cluconobacter, Rliodopila and Acidipliilium species as a branch of acidophilic bacteria in the alpha-subclass of Proteobacteria based on 16S ribosomal DNA sequences
    • Sievers M, Ludwig W, Teuber M (1994) Phylogenetic positioning of Acetobacter, Cluconobacter, Rliodopila and Acidipliilium species as a branch of acidophilic bacteria in the alpha-subclass of Proteobacteria based on 16S ribosomal DNA sequences. Systematic and Applied Microbiology, 17,189-196.
    • (1994) Systematic and Applied Microbiology , pp. 189-196
    • Sievers, M.1    Ludwig, W.2    Teuber, M.3
  • 52
    • 0030586770 scopus 로고    scopus 로고
    • S23S ribosomal RNA spacer regions of Acetobacter europaeus and A. xylinum, tRNA genes and antitermination sequences
    • Sievers M, Alonso L, Gianotti S, Boesch C, Teuber M (1996) 16S23S ribosomal RNA spacer regions of Acetobacter europaeus and A. xylinum, tRNA genes and antitermination sequences. FEMS Microbiology Letters, 142,43-48.
    • (1996) FEMS Microbiology Letters , pp. 43-48
    • Sievers, M.1    Alonso, L.2    Gianotti, S.3    Boesch, C.4    Teuber, M.5
  • 53
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rDNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rDNA sequence analysis in the present species definition in bacteriology. International Journal of Systematic Bacteriology, 44,846-849.
    • (1994) International Journal of Systematic Bacteriology , pp. 846-849
    • Goebel Bm, S.E.1
  • 54
    • 0001506291 scopus 로고    scopus 로고
    • Bacterial biodiversity: A time for place
    • Staley JT (1999) Bacterial biodiversity: a time for place. ASM News, 65,681-687.
    • (1999) ASM News , pp. 681-687
    • Staley, J.T.1
  • 55
    • 0032697215 scopus 로고    scopus 로고
    • Poles apart: Biodiversity and biogeography of sea ice bacteria
    • Staley JT, Gosink JJ (1999) Poles apart: biodiversity and biogeography of sea ice bacteria. Annual Reviews of Microbiology, 53, 189-215.
    • (1999) Annual Reviews of Microbiology , vol.53 , pp. 189-215
    • Gosink, S.J.T.1
  • 57
    • 0030023659 scopus 로고    scopus 로고
    • Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kiIobase-pair genome fragment from a planktonic marine archaeon
    • Stein JL, Marsh TL, Wu KY, Shizuya H, DeLong EF (1996) Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kiIobase-pair genome fragment from a planktonic marine archaeon. Journal of Bacteriology, 178,591-599.
    • (1996) Journal of Bacteriology , pp. 591-599
    • Stein, J.L.1    Marsh, T.L.2    Wu, K.Y.3    Shizuya, H.4    Delong, E.F.5
  • 59
    • 0031746448 scopus 로고    scopus 로고
    • Genotypic characterization of Bradyrhizobium strains nodulating endemic woody legumes of the Canary Islands by PCRrestriction fragment length polymorphism analysis of genes encoding 16S rRNA (16S rDNA) and 16S-23S rDNA intergenie spacers, repetitive extragenic palindromic PCR genomic fingerprinting, and partial 16S rDNA sequencing
    • Vinuesa P, Rademaker JLVV, Bruijn FJD, Werner D (1998) Genotypic characterization of Bradyrhizobium strains nodulating endemic woody legumes of the Canary Islands by PCRrestriction fragment length polymorphism analysis of genes encoding 16S rRNA (16S rDNA) and 16S-23S rDNA intergenie spacers, repetitive extragenic palindromic PCR genomic fingerprinting, and partial 16S rDNA sequencing. Applied and Environmental Microbiology, 64,2096-2104.
    • (1998) Applied and Environmental Microbiology , pp. 2096-2104
    • Vinuesa, P.1    Jlvv, R.2    Fjd, B.3    Werner, D.4
  • 61
    • 0027407714 scopus 로고
    • Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer
    • Yanagi M, Yamasato K (1993) Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer. FEMS Microbiology Letters, 107,115-120.
    • (1993) FEMS Microbiology Letters , pp. 115-120
    • Yanagi, M.1    Yamasato, K.2
  • 62
    • 0032432257 scopus 로고    scopus 로고
    • Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria
    • Zwart G, Hioms VVD, Methé BA et al. (1998) Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria. Systematic and Applied Microbiology, 21, 546-556.
    • (1998) Systematic and Applied Microbiology , vol.21 , pp. 546-556
    • Zwart, G.1    Vvd, H.2    Methé, B.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.