Dating the diversification of the pleurocarpous mosses

Pleurocarpous Mosses: Systematics and Evolution

Volumn , Issue , 2007, Pages 337-366

  Newton, Angela E ^a   Wikström, Niklas ^b   Bell, Neil ^a   Forrest, Laura Lowe ^c   Ignatov, Michael S ^d  

^a DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^b UPPSALA UNIVERSITY   (Sweden)

^c SOUTHERN ILLINOIS UNIVERSITY   (United States)

^d RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84923364815     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1201/9781420005592     Document Type: Chapter

References (96)

1. Bateman, R. M. (1991) Palaeobiological and phylogenetic implications of anatomically-preserved Archaeocalamites from the Dinantian of Oxroad Bay and Loch Humphrey Burn, southern Scotland. Palaeontographica Abt. B., 223: 1-59.
2. Bateman, R. M. (1999) Integrating molecular and morphological evidence of evolutionary radiations. In Molecular Systematics and Plant Evolution (ed. P. M. Hollingsworth, R. M. Bateman and R. J. Gornall). Taylor & Francis, London, pp. 432-471.
3. Beckert, S., Steinhauser, S., Muhle, H. and Knoop, V. (1999) A molecular phylogeny of bryophytes based on nucleotide sequences of the mitochondrial nad5 gene. Plant Systematics and Evolution, 218: 179-192.
4. Beckert, S., Muhle, H., Pruchner, D. and Knoop, V. (2001) The mitochondrial nad2 gene as a novel marker locus for phylogenetic analysis of early land plants: A comparative analysis in mosses. Molecular Phylogenetics and Evolution, 18: 117-126.
5. Behrensmeyer, A. K. (1992) Terrestrial Ecosystems through Time: Evolutionary Paleoecology of Terrestrial Plants and Animals. University of Chicago Press, Chicago.
6. Bell, N. and Newton, A. E. (2004) Systematic studies of non-hypnalean pleurocarps: Establishing a phylogenetic framework for investigating the origins of pleurocarpy. In Molecular Systematics of Bryophytes (ed. B. Goffinet, V. Hollowell and R. Magill). Missouri Botanical Garden Press, St. Louis, pp. 290-319.
7. Bell, N. and Newton, A. E. (2005) The paraphyly of Hypnodendron and the phylogeny of related nonhypnaneaen pleurocarpous mosses inferred from chloroplast and mitochondrial sequence data. Systematic Botany, 30: 34-51.
8. Bell, C. D., Soltis, D. E. and Soltis, P. S. (2005) The age of the angiosperms: A molecular timescale without a clock. Evolution, 59: 1245-1258.
9. Benton, M. J. (2003) Patterns and rates of species evolution. In Biological Systematics. Encyclopedia of Life Support Systems.
10. Benton, M. J. (2003) Patterns and rates of species evolution. In Biological Systematics, from Encyclopedia of Life Support Systems (EOLSS), developed under the auspices of UNESCO, Eolss Publishers, Oxford [http://www.eolss.net].
11. Buck, W. R. and Goffinet, B. (2000) Morphology and classification of mosses. In Bryophyte Biology (ed. A. J. Shaw and B. Goffinet). Cambridge University Press, Cambridge, pp. 71-123.
12. Buck, W. R., Goffinet, B. and Shaw, A. J. (2000) Testing morphological concepts of orders of pleurocarpous mosses (Bryophyta) using phylogenetic reconstructions based on trnL-trnF and rps4 sequences. Molecular Phylogenetics and Evolution, 16: 180-198.
13. Buck, W. R., Cox, C. J., Shaw A. J. and Goffinet, B. (2005) Ordinal relationships of pleurocarpous mosses, with special emphasis on the Hookeriales. Systematics and Diversity, 2: 121-145.
14. Busche, R. (1968) Als Laubmoosreste gedeutete Pflanzenfossil aus den Lebacher Schichten (Autunien) von St. Wendel, Saar. Argumenta Palaeobotanica, 2: 1-14.
15. Collinson, M. E. (2000) Cenozoic evolution of modern plant communities and vegetation. In Biotic Responses to Global Change: The Last 145 Million Years (ed. S. J. Culver and P. F. Rawson). Cambridge University Press, Cambridge, pp. 223-243.
16. Cox, C. and Hedderson, T. A. J. (1999) Phylogenetic relationships among the ciliate arthrodontous mosses:Evidence from chloroplast and nuclear DNA sequences. Plant Systematics and Evolution, 215:119-139.
17. Cox, C., Goffinet, B., Newton, A. E., Shaw, A. J. and Hedderson, T. A. J. (2000) Phylogenetic relationships among the diplolepidous-alternate mosses (Bryidae) inferred from nuclear and chloroplast DNA sequences. Bryologist, 103: 224-241.
18. Cox, C., Goffinet, B., Shaw, A. J. and Boles, S. (2004) Phylogenetic relationships among the mosses based on heterogenous Bayesian analysis of multiple genes from multiple genomic compartments. Systematic Botany, 29: 234-250.
19. Crane, P. R. (1987) Vegetational consequences of angiosperm diversification. In The Origins of Angiosperms and their Biological Consequences (ed. E. M. Friis, W. G. Chaloner and P. R. Crane). Cambridge University Press, Cambridge, pp. 107-144.
20. Crane, P. R., Friis, E. M. and Pedersen, K. R. (1995) The origin and early diversification of angiosperms. Nature, 374: 27-33.
21. Crosby, M. R., Magill, R. E., Allen, B. and He, S. (1999) A Checklist of the Mosses. Missouri Botanical Garden, St. Louis.
22. De Luna, E. (1990) Developmental evidence of acrocarpy in Hedwigia ciliata (Musci: Hedwigiaceae). Tropical Bryology, 2: 53-60.
23. De Luna, E., Newton, A. E., Withey, A., Gonzalez, D. and Mishler, B. D. (1999) The transition to pleurocarpy:A phylogenetic analysis of the main diplolepidous lineages based on rbcL sequences and morphology. Bryologist, 102: 634-650.
24. De Luna, E., Buck, W., Akiyama, H., Arikawa, T., Tsubota, H., Gonzalez, D., Newton, A. E. and Shaw, A. J. (2000) Ordinal phylogeny within the hypnobryalean pleurocarpous mosses inferred from cladistic analyses of three chloroplast DNA sequence data sets: trnL-F, rps4, and rbcL. Bryologist, 103: 242-256.
25. Dixon, H. N. (1922) Note on a moss in amber. The Journal of Botany British and Foreign, 60: 149-151.
26. Doyle, J. A. (2000) Paleobotany, relationships, and geographic history of Winteraceae. Annals of the Missouri Botanical Garden, 87: 303-316.
27. Faith, D. P. (1992) Conservation evaluation and phylogenetic diversity. Biological Conservation, 61: 1-10.
28. Forrest, L. L. and Crandall-Stotler, B. J. (2004) A phylogeny of the simple thalloid liverworts (Jungermanniopsida, Metzgeriidae) as inferred from five chloroplast genes. In Molecular Systematics of Bryophytes (ed. B. Goffinet, V. Hollowell and R. Magill). Missouri Botanical Garden Press, St. Louis, pp. 119-140.
29. Friis, E. M., Pedersen, K. R. and Crane, P. R. (1999) Early angiosperm diversification: The diversity of pollen associated with angiosperm reproductive structures in Early Cretaceous floras from Portugal. Annals of the Missouri Botanical Garden, 86: 259-296.
30. Friis, E. M., Pedersen, K. R. and Crane, P. R. (2004) Araceae from the Early Cretaceous of Portugal: Evidence on the emergence of monocotyledons. Proceedings of the National Academy of Sciences, USA, 101:16565-16570.
31. Givnish, T. J. (1997) Adaptive radiation and molecular systematics: Issues and approaches. In Molecular Evolution and Adaptive Radiation (ed. T. J. Givnish and K. J. Sytsma). Cambridge University Press, Cambridge, pp. 1-54.
32. Goffinet, B. and Cox, C. (2000) Phylogenetic relationships among basal-most arthrodontous mosses with special emphasis on the evolutionary significance of the Funariineae. Bryologist, 103: 212-276.
33. Goffinet, B. and Buck, W. R. (2004) Systematics of Bryophyta (mosses): From molecules to a revised classification. In Molecular Systematics of Bryophytes (ed. B. Goffinet, V. Hollowell and R. Magill). Missouri Botanical Garden Press, St. Louis, pp. 205-239.
34. Gradstein, S. R., Churchill, S. and Salazar-Allen, N. (2001) Guide to the Bryophytes of Tropical America. New York Botanical Garden Press, New York.
35. Gray, J. (1993) Major Palaeozoic land plant evolutionary bio-events. Palaeogeography, Palaeoclimatology, Palaeoecology, 104: 153-169.
36. Hedderson, T. A. J., Cox, C. J. and Gibbings, J. G. (1999) Phylogenetic relationships of the Wardiaceae (Musci): Evidence from 18S rRNA and rps4 gene sequences. Bryologist, 97: 225-243.
37. Hedenas, L. (1994) The basal pleurocarpous diplolepidous mosses: A cladistic approach. Bryologist, 97:225-243.
38. Huelsenbeck, J. P. and Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogeny. Bioinformatics, 17: 754-755.
39. Huttunen, S., Ignatov, M., Müller, K. and Quandt, D. (2004). Phylogeny and evolution of epiphytism in the three moss families Meteoriaceae, Brachytheciaceae, and Lembophyllaceae. In Molecular Systematics of Bryophytes (ed. B. Goffinet, V. Hollowell and R. Magill). Missouri Botanical Garden Press, St. Louis, pp. 328-361.
40. Hyvönen, J., Hedderson, T. A. J., Smith Merrill, G. L., Gibbings, G. and Koskinen, S. (1998) On phylogeny of the Polytrichales. Bryologist, 101: 489-504.
41. Hyvönen, J., Koskinen, S., Smith Merrill, G. L., Hedderson, T. A. J. and Steinroos, S. (2004) Phylogeny of the Polytrichales (Bryophyta) based on simultaneous analysis of molecular and morphological data. Molecular Phylogenetics and Evolution, 31: 915-928.
42. Ignatov, M. S. (1990) Upper Permian mosses from the Russian platform. Palaeontographica Abt. B 217: 147-189.
43. Ihaka, R. and Gentlemen, R. (1996) R: A language for data analysis and graphics. Journal of Computational and Graphical Statistics, 5: 299-314.
44. Janssens, J. A. P., Horton, D. G. and Basinger, J. F. (1979) Aulacomnium heterostichoides sp. nov., an Eocene moss from south central British Columbia. Canadian Journal of Botany, 57: 2150-2161.
45. Kenrick, P. and Crane, P. R. (1997a) The origin and early evolution of plants on land. Nature, 389: 33-39.
46. Kenrick, P. and Crane, P. R. (1997b) The Origin and Early Diversification of Land Plants: A Cladistic Study, Smithsonian Institution Press, Washington, D.C.
47. Konopka, A. S., Herenden, P. S., Smith Merrill, G. L. and Crane, P. R. (1997) Sporophytes and gametophytes of Polytrichaceae from the Campanian (Late Cretaceous) of Georgia, USA. International Journal of Plant Science, 158: 489-499.
48. Koponen, T. (1988) The phylogeny and classification of Mniaceae and Rhizogoniaceae. Journal of the Hattori Botanical Laboratory, 64: 37-46.
49. Koskinen, S. and Hyvonen, J. (2004) Pogonatum (Polytrichales, Bryophyta) revisited. In Molecular Systematics of Bryophytes (ed. B. Goffinet, V. Hollowell and R. Magill). Missouri Botanical Garden Press, St. Louis, pp. 255-269.
50. Krassilov, V. A. (1973) Mesozoic bryophytes from the Bureya basin, far east of the USSR. Palaeontographica Abt. B 143: 95-105.
51. Krassilov, V. A. and Schuster, R. M. (1984) Paleozoic and mesozoic fossils. In New Manual of Bryology (ed. R. M. Schuster). The Hattori Botanical Laboratory, Nichinan, pp. 1172-1193.
52. La Farge-England, C. (1996) Growth form, branching pattern and perichaetial position in mosses: Cladocarpy and pleurocarpy redefined. Bryologist, 99: 170-186.
53. La Farge-England, C., Mishler, B. D., Wheeler, J., Wall, D. P., Johannes, K., Schaffer, S. and Shaw, A. J. (2000) Phylogenetic relationships within the haplolepidous mosses. Bryologist, 103: 257-276.
54. La Farge-England, C., Shaw, A. J. and Vitt, D. (2002) The circumscription of the Dicranaceae (Bryopsida) based on the chloroplast regions trnL-trnF and rps4. Systematic Botany, 27: 435-452.
55. Larget, B. and Simon, D. L. (1999) Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Molecular Biology and Evolution, 16: 750-759.
56. Loader, C. (1999). Local Regression and Likelihood, Springer Mathematics, New York.
57. Lupia, R., Crane, P. R. and Lidgard, S. (2000) Angiosperm diversification and Cretaceous environmental change. In Biotic Responses to Global Change: The Last 145 Million Years (ed. S. J. Culver and P. F. Rawson). Cambridge University Press, Cambridge, pp. 207-222.
58. Magallón, S. (2004) Dating lineages: Molecular and paleontological approaches to the temporal framework of clades. International Journal of Plant Science, 165: S7-S21.
59. Magallón, S. and Sanderson, M. (2005) Angiosperm divergence times: The effect of genes, codon positions and time constraints. Evolution, 59: 1653-1670.
60. Meusel, H. (1935) Wuchsformen und Wuchstypen der europäischen Laubmoose. Nova Acta Leopoldina (Neue Folge), 3(12): 123-277.
61. Miller, C. N. J. (1999) Implications of fossil conifers for the phylogenetic relationships of living families. Botanical Review, 30: 239-277.
62. Miller, N. G. (1984) Tertiary and Quaternary fossils. In New Manual of Bryology (ed. R. M. Schuster). The Hattori Botanical Laboratory, Nichinan, pp. 1194-1232.
63. Morley, R. J. (2000) Origin and Evolution of Tropical Rainforests. John Wiley & Sons, Chichester.
64. Nee, S. (2001) Inferring speciation rates from phylogenies. Evolution, 55: 661-668.
65. Nee, S., Holmes, E. C., May, R. M. and Harvey, P. H. (1994) Extinction rates can be estimated from molecular phylogenies. Philosophical Transactions of the Royal Society of London B, 344: 77-82.
66. Neuberg, M. F. (1960) Leafy mosses from the Permian deposits of Angarida. Trudui Geological Institute S.S.S.R, 19: 1-104.
67. Newton, A. E., Cox, C., Duckett, J. G., Wheeler, J., Goffinet, B., Hedderson, T. A. J. and Mishler, B. D. (2000) Evolution of the major moss lineages. Bryologist, 103: 187-211.
68. Newton, A. E. and De Luna, E. (1999) A survey of morphological characters for phylogenetic study of the transition to pleurocarpy. Bryologist, 102: 651-682.
69. Newton, A. E., Cox, C. J., De Luna, E. and Hedenas, L. (2000) Evolutionary radiation of the pleurocarpous mosses: Phylogenetic analyses incorporating morphological characters with rbcL, rps4 and trnL-F sequence data. American Journal of Botany, 87(6) Supplement: 13.
70. Nylander, J. A. A. (2004) MrModeltest 2.0., Department of Zoology, Uppsala University.
71. Oostendorp, C. (1987) The Bryophytes of the Palaeozoic and the Mesozoic. J. Cramer, Berlin.
72. Paton, J. A. (1999) The Liverwort Flora of the British Isles. Harley Books, Colchester.
73. Posada, D. and Crandall, K. A. (1998) MODELTEST: Testing the model of DNA substitution. Bioinformatics, 14: 817-818.
74. Pybus, O. G. and Harvey, P. H. (2000) Testing macro-evolutionary models using incomplete molecular phylogenies. Proceedings of the Royal Society of London. B., 267: 2267-2272.
75. Rambaut, A. (1996) Se-Al: Sequence Alignment Editor. Available at http://evolve.zoo.ox.ac.uk/.
76. Rice, S. K. and Schneider, N. (2004) Cushion size, surface roughness, and the control of water balance and carbon flux in the cushion moss Leucobryum glaucum (Leucobryaceae). American Journal of Botany, 91: 1164-1172.
77. Rice, S. K., Collins, D. and Anderson, A. M. (2001) Functional significance of variation in bryophyte canopy structure. American Journal of Botany, 88: 1568-1576.
78. Sanderson, M. J. (2002) Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach. Molecular Biology and Evolution, 19: 101-109.
79. Sanderson, M. J. (2003) r8s: Inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics, 19: 301-302.
80. Sanderson, M. J., Thorne, J. I., Wikström, N. and Bremer, K. (2004) Molecular evidence on plant divergence times. American Journal of Botany, 91: 1656-1665.
81. Sanderson, M. (1998) Reappraising adaptive radiation. American Journal of Botany, 85: 1650-1655.
82. Schneider, H., Schuettpelz, E., Pryer, K. M., Cranfill, R., Magallon, S. and Lupia, R. (2004) Ferns diversified in the shadow of the angiosperms. Nature, 428: 553-557.
83. Shaw, A. J., Cox, C. J., Goffinet, B., Buck, W. R. and Boles, S. B. (2003) Phylogenetic evidence of a rapid radiation of pleurocarpous mosses (Bryophyta). Evolution, 57: 2226-2241.
84. Shaw, A. J., Cox, C. J. and Melosik, I. (2004) Diversification of peatmosses: A phylogenetic approach. In Molecular Systematics of Bryophytes (ed. B. Goffinet, V. Hollowell and R. Magill). Missouri Botanical Garden Press, St. Louis, pp. 240-254.
85. Soltis, P. S., Soltis, D. E., Savolainen, V., Crane, P. R. and Barraclough, T. G. (2002) Rate heterogeneity among lineages of tracheophytes: Integration of molecular and fossil data and evidence from molecular living fossils. Proceedings of the National Academy of Sciences, USA, 99: 4430-4435.
86. Vitt, D. (1984). Classification of the Bryopsida. In New Manual of Bryology (ed. R. M. Schuster). Hattori Botanical Laboratory, Nichinan, pp. 676-759.
87. Ward, P. D., Montgomery, D. R. and Smith, R. (2000) Altered river morphology in South Africa related to the Permian-Triassic extinction. Science, 289: 1740-1743.
88. Watson, E. V. (1968) British Mosses and Liverworts. Cambridge University Press, Cambridge.
89. Wellman, C. H., Osterloff, P. L. and Mohiuddin, U. (2003) Fragments of the earliest land plants. Nature, 425:282-285.
90. Wikström, N., Savolainen, V. and Chase, M. W. (2001) Evolution of the angiosperms: Calibrating the family tree. Proceedings of the Royal Society of London. B., 268: 2211-2220.
91. Wikström, N., Savolainen, V. and Chase, M. W. (2003) Angiosperm divergence times: Congruence and incongruence between fossils and sequence divergence estimates. In Telling the Evolutionary Time:Molecular Clocks and the Fossil Record (ed. P. C. J. Donoghue and M. P. Smith). Taylor & Francis, London, pp. 142-165.
92. Wing, S. L. and Boucher, L. D. (1998) Ecological aspects of the Cretaceous flowering plant radiation. Annual Review of Earth and Planetary Sciences, 26: 379-421.
93. Wing, S. L., Hickey, L. J. and Swisher, C. C. (1993) Implications of an exceptional fossil flora for Late Cretaceous vegetation. Nature, 363: 342-344.
94. Wolfe, J. A. and Upchurch, G. R. (1987) North American non-marine climates and vegetation during the Late Cretaceous. Palaeogeography, Palaeoclimatology, Palaeoecology, 61: 33-77.
95. Zander, R. H. (1993) Genera of the Pottiaceae: Mosses of Harsh Environments. Buffalo Society of Natural Sciences, Buffalo.
96. Zherikhin, V. V. and Ross, A. J. (2000) A review of the history, geology and age of Burmese amber (Burmite). Bulletin of the Natural History Museum, Geology Series, 56: 3-10.