메뉴 건너뛰기




Volumn 5, Issue , 2014, Pages

Genome flux and stasis in a five millennium transect of European prehistory

(17)  Gamba, Cristina a,b   Jones, Eppie R b   Teasdale, Matthew D b   McLaughlin, Russell L b   Gonzalez Fortes, Gloria c   Mattiangeli, Valeria b   Domboróczki, László d   Kovári, Ivett e   Pap, Ildikó f   Anders, Alexandra g   Whittle, Alasdair h   Dani, János i   Raczky, Pál g   Higham, Thomas F G j   Hofreiter, Michael c   Bradley, Daniel G b   Pinhasi, Ron a,b  


Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 84923357868     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms6257     Document Type: Article
Times cited : (491)

References (56)
  • 1
    • 84865251657 scopus 로고    scopus 로고
    • Genomic affinities of two 7,000-year-old iberian hunter-gatherers
    • Sánchez-Quinto, F. et al. Genomic affinities of two 7,000-year-old iberian hunter-gatherers. Curr. Biol. 22, 1494-1499 (2012).
    • (2012) Curr. Biol. , vol.22 , pp. 1494-1499
    • Sánchez-Quinto, F.1
  • 2
    • 84860132302 scopus 로고    scopus 로고
    • Origins and genetic legacy of neolithic farmers and hunter-gatherers in Europe
    • Skoglund, P. et al. Origins and genetic legacy of neolithic farmers and hunter-gatherers in Europe. Science 336, 466-469 (2012).
    • (2012) Science , vol.336 , pp. 466-469
    • Skoglund, P.1
  • 3
    • 80052307945 scopus 로고    scopus 로고
    • Fragmentation of contaminant and endogenous DNA in ancient samples determined by shotgun sequencing; prospects for human palaeogenomics
    • García-Garcerà, M.et al. Fragmentation of contaminant and endogenous DNA in ancient samples determined by shotgun sequencing; prospects for human palaeogenomics. PLoS ONE 6, e24161 (2011).
    • (2011) PLoS ONE , vol.6
    • García-Garcerà, M.1
  • 4
    • 84892367625 scopus 로고    scopus 로고
    • Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
    • Raghavan, M. et al. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature 505, 87-91 (2013).
    • (2013) Nature , vol.505 , pp. 87-91
    • Raghavan, M.1
  • 5
    • 84907803675 scopus 로고    scopus 로고
    • Ancient human genomes suggest three ancestral populations for present-day Europeans
    • Lazaridis, I. et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature 513, 409-413 (2014).
    • (2014) Nature , vol.513 , pp. 409-413
    • Lazaridis, I.1
  • 6
    • 84863230079 scopus 로고    scopus 로고
    • New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing
    • Keller, A. et al. New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing. Nat. Commun. 3, 698 (2012).
    • (2012) Nat. Commun. , vol.3 , pp. 698
    • Keller, A.1
  • 7
    • 84896319183 scopus 로고    scopus 로고
    • Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European
    • Olalde, I. et al. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. Nature 507, 225-228 (2014).
    • (2014) Nature , vol.507 , pp. 225-228
    • Olalde, I.1
  • 8
    • 84900491404 scopus 로고    scopus 로고
    • Genomic Diversity and admixture differs for stone-age Scandinavian foragers and farmers
    • Skoglund, P. et al. Genomic Diversity and admixture differs for stone-age Scandinavian foragers and farmers. Science 344, 747-750 (2014).
    • (2014) Science , vol.344 , pp. 747-750
    • Skoglund, P.1
  • 11
    • 84964847104 scopus 로고    scopus 로고
    • eds. Spataro, M. & Biagi, P.) Società per la Preistoria e Protostoria della Regione Friuli-Venezia Giulia, Quaderno 12
    • Nandris, J. in Short Walk Balk. First Farmers Carpathian Basin Adjac. Reg.. eds. Spataro, M. & Biagi, P.) 11-23 (Società per la Preistoria e Protostoria della Regione Friuli-Venezia Giulia, Quaderno 12, 2007).
    • (2007) Short Walk Balk. First Farmers Carpathian Basin Adjac. Reg. , pp. 11-23
    • Nandris, J.1
  • 15
    • 84861767383 scopus 로고    scopus 로고
    • Three successive waves of Neolithisation: LBK development in Transdanubia
    • Oross, K. & Bánffy, E. Three successive waves of Neolithisation: LBK development in Transdanubia. Doc. Praehist. 36, 175-189 (2009).
    • (2009) Doc. Praehist , vol.36 , pp. 175-189
    • Oross, K.1    Bánffy, E.2
  • 17
    • 0001381810 scopus 로고    scopus 로고
    • Intertaxonomic Variability in patterns of bone density and the differential representation of Bovid, Cervid, and Equid Elements in the Archaeological record
    • Lam, Y. M., Chen, X. & Pearson, O. M. Intertaxonomic Variability in patterns of bone density and the differential representation of Bovid, Cervid, and Equid Elements in the Archaeological record. Am. Antiq. 64, 343-362 (1999).
    • (1999) Am. Antiq , vol.64 , pp. 343-362
    • Lam, Y.M.1    Chen, X.2    Pearson, O.M.3
  • 18
    • 39749181521 scopus 로고    scopus 로고
    • Worldwide human relationships inferred from genome-wide patterns of variation
    • Li, J. Z. et al. Worldwide human relationships inferred from genome-wide patterns of variation. Science 319, 1100-1104 (2008).
    • (2008) Science , vol.319 , pp. 1100-1104
    • Li, J.Z.1
  • 19
    • 77954542018 scopus 로고    scopus 로고
    • The genome-wide structure of the Jewish people
    • Behar, D. M. et al. The genome-wide structure of the Jewish people. Nature 466, 238-242 (2010).
    • (2010) Nature , vol.466 , pp. 238-242
    • Behar, D.M.1
  • 20
    • 84862907080 scopus 로고    scopus 로고
    • The Caucasus as an asymmetric semipermeable barrier to ancient human migrations
    • Yunusbayev, B. et al. The Caucasus as an asymmetric semipermeable barrier to ancient human migrations. Mol. Biol. Evol. 29, 359-365 (2012).
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 359-365
    • Yunusbayev, B.1
  • 21
    • 84928543398 scopus 로고    scopus 로고
    • The Neolithic settlement at Tiszaszo{combining double acute accent}lo{combining double acute accent}s-Domaháza-puszta and the question of the northern spread of the Körös Culture
    • Domboróczki, L., Kaczanowska, M. & Kozłowski, J. The Neolithic settlement at Tiszaszo{combining double acute accent}lo{combining double acute accent}s-Domaháza-puszta and the question of the northern spread of the Körös Culture. Atti Soc. Preist. Protost. Friuli-V.G. 17, 101-155 (2010).
    • (2010) Atti Soc. Preist. Protost. Friuli-V.G , vol.17 , pp. 101-155
    • Domboróczki, L.1    Kaczanowska, M.2    Kozłowski, J.3
  • 22
    • 84886293996 scopus 로고    scopus 로고
    • 2000 Years of parallel societies in stone age Central Europe
    • Bollongino, R. et al. 2000 Years of parallel societies in stone age Central Europe. Science 342, 479-481 (2013).
    • (2013) Science , vol.342 , pp. 479-481
    • Bollongino, R.1
  • 23
    • 84885625204 scopus 로고    scopus 로고
    • Ancient DNA reveals key stages in the formation of central european mitochondrial genetic diversity
    • Brandt, G. et al. Ancient DNA reveals key stages in the formation of central european mitochondrial genetic diversity. Science 342, 257-261 (2013).
    • (2013) Science , vol.342 , pp. 257-261
    • Brandt, G.1
  • 24
    • 27744447195 scopus 로고    scopus 로고
    • Ancient DNA from the first European farmers in 7500-year-old Neolithic Sites
    • Haak, W. et al. Ancient DNA from the first European farmers in 7500-year-old Neolithic Sites. Science 310, 1016-1018 (2005).
    • (2005) Science , vol.310 , pp. 1016-1018
    • Haak, W.1
  • 25
    • 81055130133 scopus 로고    scopus 로고
    • Ancient DNA suggests the leading role played by men in the Neolithic dissemination
    • Lacan, M. et al. Ancient DNA suggests the leading role played by men in the Neolithic dissemination. Proc. Natl Acad. Sci. USA 108, 18255-18259 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 18255-18259
    • Lacan, M.1
  • 27
    • 84861598099 scopus 로고    scopus 로고
    • Extremely low-coverage sequencing and imputation increases power for genome-wide association studies
    • Pasaniuc, B. et al. Extremely low-coverage sequencing and imputation increases power for genome-wide association studies. Nat. Genet. 44, 631-635 (2012).
    • (2012) Nat. Genet. , vol.44 , pp. 631-635
    • Pasaniuc, B.1
  • 28
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1,092 human genomes
    • 1000 Genomes Project Consortium et al. An integrated map of genetic variation from 1,092 human genomes. Nature 491, 56-65 (2012).
    • (2012) Nature , vol.491 , pp. 56-65
  • 29
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander, D. H., Novembre, J. & Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655-1664 (2009).
    • (2009) Genome Res. , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 30
    • 84864599767 scopus 로고    scopus 로고
    • Genomic patterns of homozygosity in worldwide human populations
    • Pemberton, T. J. et al. Genomic patterns of homozygosity in worldwide human populations. Am. J. Hum. Genet. 91, 275-292 (2012).
    • (2012) Am. J. Hum. Genet. , vol.91 , pp. 275-292
    • Pemberton, T.J.1
  • 31
    • 84883214478 scopus 로고    scopus 로고
    • Inferring demography from runs of homozygosity in whole-genome sequence, with correction for sequence errors
    • MacLeod, I. M., Larkin, D. M., Lewin, H. A., Hayes, B. J. & Goddard, M. E. Inferring demography from runs of homozygosity in whole-genome sequence, with correction for sequence errors. Mol. Biol. Evol. 30, 2209-2223 (2013).
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 2209-2223
    • MacLeod, I.M.1    Larkin, D.M.2    Lewin, H.A.3    Hayes, B.J.4    Goddard, M.E.5
  • 32
    • 84897536379 scopus 로고    scopus 로고
    • Direct evidence for positive selection of skin, hair, and eye pigmentation in Europeans during the last 5,000 y
    • Wilde, S. et al. Direct evidence for positive selection of skin, hair, and eye pigmentation in Europeans during the last 5,000 y. Proc. Natl Acad. Sci. USA 111, 4832-4837 (2014).
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 4832-4837
    • Wilde, S.1
  • 33
    • 84866781426 scopus 로고    scopus 로고
    • The timing of pigmentation lightening in Europeans
    • Beleza, S. et al. The timing of pigmentation lightening in Europeans. Mol. Biol. Evol. 30, 24-35 (2012).
    • (2012) Mol. Biol. Evol. , vol.30 , pp. 24-35
    • Beleza, S.1
  • 35
    • 35349012592 scopus 로고    scopus 로고
    • Genome-wide detection and characterization of positive selection in human populations
    • Sabeti, P. C. et al. Genome-wide detection and characterization of positive selection in human populations. Nature 449, 913-918 (2007).
    • (2007) Nature , vol.449 , pp. 913-918
    • Sabeti, P.C.1
  • 36
    • 34047123042 scopus 로고    scopus 로고
    • Did the first farmers of central and eastern Europe produce dairy foods?
    • Craig, O. E. et al. Did the first farmers of central and eastern Europe produce dairy foods? Antiquity 79, 882-894 (2005).
    • (2005) Antiquity , vol.79 , pp. 882-894
    • Craig, O.E.1
  • 37
    • 34247246180 scopus 로고    scopus 로고
    • Absence of the lactase-persistence-associated allele in early Neolithic Europeans
    • Burger, J., Kirchner, M., Bramanti, B., Haak, W. & Thomas, M. G. Absence of the lactase-persistence-associated allele in early Neolithic Europeans. Proc. Natl Acad. Sci. USA 104, 3736-3741 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 3736-3741
    • Burger, J.1    Kirchner, M.2    Bramanti, B.3    Haak, W.4    Thomas, M.G.5
  • 38
    • 84897886975 scopus 로고    scopus 로고
    • Direct estimates of natural selection in Iberia indicate calcium absorption was not the only driver of lactase persistence in Europe
    • Sverrisdóttir, O. Ó. et al. Direct estimates of natural selection in Iberia indicate calcium absorption was not the only driver of lactase persistence in Europe. Mol. Biol. Evol. 31, 975-983 (2014).
    • (2014) Mol. Biol. Evol. , vol.31 , pp. 975-983
    • Sverrisdóttir, O.Ó.1
  • 39
    • 0031921276 scopus 로고    scopus 로고
    • Technical note: Improved DNA extraction from ancient bones using silica-based spin columns
    • Yang, D. Y., Eng, B., Waye, J. S., Dudar, J. C. & Saunders, S. R. Technical note: improved DNA extraction from ancient bones using silica-based spin columns. Am. J. Phys. Anthropol. 105, 539-543 (1998).
    • (1998) Am. J. Phys. Anthropol. , vol.105 , pp. 539-543
    • Yang, D.Y.1    Eng, B.2    Waye, J.S.3    Dudar, J.C.4    Saunders, S.R.5
  • 40
    • 0011643460 scopus 로고    scopus 로고
    • The extraction and analysis of ancient DNA from bone and teeth: A survey of current methodologies
    • MacHugh, D. E., Edwards, C. J., Bailey, J. F., Bancroft, D. R. & Bradley, D. G. The extraction and analysis of ancient DNA from bone and teeth: a survey of current methodologies. Anc. Biomol. 3, 81-102 (2000).
    • (2000) Anc. Biomol , vol.3 , pp. 81-102
    • MacHugh, D.E.1    Edwards, C.J.2    Bailey, J.F.3    Bancroft, D.R.4    Bradley, D.G.5
  • 41
    • 77956285690 scopus 로고    scopus 로고
    • Illumina sequencing library preparation for highly multiplexed target capture and sequencing
    • Meyer, M. & Kircher, M. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb. Protoc. 6, http://dx.doi.org/10.1101/pdb.prot5448 (2010).
    • (2010) Cold Spring Harb. Protoc , vol.6
    • Meyer, M.1    Kircher, M.2
  • 42
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin, M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J. 17, 10-12 (2011).
    • (2011) EMBnet J , vol.17 , pp. 10-12
    • Martin, M.1
  • 43
    • 84867331947 scopus 로고    scopus 로고
    • A high-coverage genome sequence from an Archaic Denisovan individual
    • Meyer, M. et al. A high-coverage genome sequence from an Archaic Denisovan individual. Science 338, 222-226 (2012).
    • (2012) Science , vol.338 , pp. 222-226
    • Meyer, M.1
  • 44
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 45
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map (SAM) format and SAMtools
    • Li, H. et al. The sequence alignment/map (SAM) format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 46
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 47
    • 84881242231 scopus 로고    scopus 로고
    • Accurate sex identification of ancient human remains using DNA shotgun sequencing
    • Skoglund, P., Storå, J., Götherström, A. & Jakobsson, M. Accurate sex identification of ancient human remains using DNA shotgun sequencing. J. Archaeol. Sci. 40, 4477-4482 (2013).
    • (2013) J. Archaeol. Sci. , vol.40 , pp. 4477-4482
    • Skoglund, P.1    Storå, J.2    Götherström, A.3    Jakobsson, M.4
  • 48
    • 82755160780 scopus 로고    scopus 로고
    • MitoBamAnnotator: A web-based tool for detecting and annotating heteroplasmy in human mitochondrial DNA sequences
    • Zhidkov, I., Nagar, T., Mishmar, D. & Rubin, E. MitoBamAnnotator: a web-based tool for detecting and annotating heteroplasmy in human mitochondrial DNA sequences. Mitochondrion 11, 924-928 (2011).
    • (2011) Mitochondrion , vol.11 , pp. 924-928
    • Zhidkov, I.1    Nagar, T.2    Mishmar, D.3    Rubin, E.4
  • 49
    • 78650459836 scopus 로고    scopus 로고
    • HaploGrep: A fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups
    • Kloss-Brandstätter, A. et al. HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups. Hum. Mutat. 32, 25-32 (2011).
    • (2011) Hum. Mutat , vol.32 , pp. 25-32
    • Kloss-Brandstätter, A.1
  • 50
    • 64049089255 scopus 로고    scopus 로고
    • Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation
    • Van Oven, M. & Kayser, M. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum. Mutat. 30, E386-E394 (2009).
    • (2009) Hum. Mutat , vol.30 , pp. E386-E394
    • Van Oven, M.1    Kayser, M.2
  • 51
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and Eigen analysis
    • Patterson, N., Price, A. L. & Reich, D. Population structure and Eigen analysis. PLoS Genet. 2, e190 (2006).
    • (2006) PLoS Genet. , vol.2 , pp. e190
    • Patterson, N.1    Price, A.L.2    Reich, D.3
  • 52
    • 84887092567 scopus 로고    scopus 로고
    • Estimating individual admixture proportions from next generation sequencing data
    • Skotte, L., Korneliussen, T. S. & Albrechtsen, A. Estimating individual admixture proportions from next generation sequencing data. Genetics 195, 693-702 (2013).
    • (2013) Genetics , vol.195 , pp. 693-702
    • Skotte, L.1    Korneliussen, T.S.2    Albrechtsen, A.3
  • 53
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A tool set for whole-genome association and population-based linkage analyses
    • Purcell, S. et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559-575 (2007).
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 559-575
    • Purcell, S.1
  • 55
    • 80052267479 scopus 로고    scopus 로고
    • Prediction of eye and skin colour in diverse populations using seven SNPs
    • Spichenok, O. et al. Prediction of eye and skin colour in diverse populations using seven SNPs. Forensic Sci. Int. Genet. 5, 472-478 (2010).
    • (2010) Forensic Sci. Int. Genet. , vol.5 , pp. 472-478
    • Spichenok, O.1
  • 56
    • 84869497281 scopus 로고    scopus 로고
    • The HIrisPlex system for simultaneous prediction of hair and eye colour from DNA
    • Walsh, S. et al. The HIrisPlex system for simultaneous prediction of hair and eye colour from DNA. Forensic Sci. Int. Genet. 7, 98-115 (2012).
    • (2012) Forensic Sci. Int. Genet. , vol.7 , pp. 98-115
    • Walsh, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.