-
1
-
-
78649844432
-
Activity Landscape Representations for Structure-Activity Relationship Analysis
-
Wassermann, A. M.; Wawer, M.; Bajorath, J. R. Activity Landscape Representations for Structure-Activity Relationship Analysis J. Med. Chem. 2010, 53, 8209-8223
-
(2010)
J. Med. Chem.
, vol.53
, pp. 8209-8223
-
-
Wassermann, A.M.1
Wawer, M.2
Bajorath, J.R.3
-
2
-
-
67649341994
-
Navigating structure-activity landscapes
-
Bajorath, J.; Peltason, L.; Wawer, M.; Guha, R.; Lajiness, M. S.; Van Drie, J. H. Navigating structure-activity landscapes Drug Discovery Today 2009, 14, 698-705
-
(2009)
Drug Discovery Today
, vol.14
, pp. 698-705
-
-
Bajorath, J.1
Peltason, L.2
Wawer, M.3
Guha, R.4
Lajiness, M.S.5
Van Drie, J.H.6
-
3
-
-
84923349899
-
-
Presented at the 222nd ACS National Meeting, Chicago, IL, USA, 2001; American Chemical Society: Washington, DC
-
Shanmugasundaram, V.; Maggiora, G. M. Characterizing property and activity landscapes using an information-theoretic approach. Presented at the 222nd ACS National Meeting, Chicago, IL, USA, 2001; American Chemical Society: Washington, DC, 2001.
-
(2001)
Characterizing Property and Activity Landscapes Using An Information-theoretic Approach
-
-
Shanmugasundaram, V.1
Maggiora, G.M.2
-
4
-
-
84867818837
-
Scanning Structure-Activity Relationships with Structure-Activity Similarity and Related Maps: From Consensus Activity Cliffs to Selectivity Switches
-
Medina-Franco, J. L. Scanning Structure-Activity Relationships with Structure-Activity Similarity and Related Maps: From Consensus Activity Cliffs to Selectivity Switches J. Chem. Inf. Model. 2012, 52, 2485-2493
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 2485-2493
-
-
Medina-Franco, J.L.1
-
5
-
-
84866263978
-
Bioactivity landscape modeling: Chemoinformatic characterization of structure-activity relationships of compounds tested across multiple targets
-
Waddell, J.; Medina-Franco, J. L. Bioactivity landscape modeling: Chemoinformatic characterization of structure-activity relationships of compounds tested across multiple targets Bioorg. Med. Chem. 2012, 20, 5443-5452
-
(2012)
Bioorg. Med. Chem.
, vol.20
, pp. 5443-5452
-
-
Waddell, J.1
Medina-Franco, J.L.2
-
6
-
-
79952451546
-
Structure-activity relationships of benzimidazole derivatives as antiparasitic agents: Dual activity-difference (DAD) maps
-
Pérez-Villanueva, J.; Santos, R.; Hernandez-Campos, A.; Giulianotti, M. A.; Castillo, R.; Medina-Franco, J. L. Structure-activity relationships of benzimidazole derivatives as antiparasitic agents: Dual activity-difference (DAD) maps Med. Chem. Commun. 2010, 2, 44-49
-
(2010)
Med. Chem. Commun.
, vol.2
, pp. 44-49
-
-
Pérez-Villanueva, J.1
Santos, R.2
Hernandez-Campos, A.3
Giulianotti, M.A.4
Castillo, R.5
Medina-Franco, J.L.6
-
7
-
-
84861193545
-
Activity landscape modeling of PPAR ligands with dual-activity difference maps
-
Méndez-Lucio, O.; Pérez-Villanueva, J.; Castillo, R.; Medina-Franco, J. L. Activity landscape modeling of PPAR ligands with dual-activity difference maps Bioorg. Med. Chem. 2012, 20, 3523-3532
-
(2012)
Bioorg. Med. Chem.
, vol.20
, pp. 3523-3532
-
-
Méndez-Lucio, O.1
Pérez-Villanueva, J.2
Castillo, R.3
Medina-Franco, J.L.4
-
8
-
-
53549123322
-
Structure-Activity Relationship Anatomy by Network-like Similarity Graphs and Local Structure-Activity Relationship Indices
-
Wawer, M.; Peltason, L.; Weskamp, N.; Teckentrup, A.; Bajorath, J. r. Structure-Activity Relationship Anatomy by Network-like Similarity Graphs and Local Structure-Activity Relationship Indices J. Med. Chem. 2008, 51, 6075-6084
-
(2008)
J. Med. Chem.
, vol.51
, pp. 6075-6084
-
-
Wawer, M.1
Peltason, L.2
Weskamp, N.3
Teckentrup, A.4
Bajorath, J.R.5
-
9
-
-
84867377213
-
Exploring structure-activity data using the landscape paradigm
-
Guha, R. Exploring structure-activity data using the landscape paradigm WIREs Comput. Mol. Sci. 2012, 2, 829-841
-
(2012)
WIREs Comput. Mol. Sci.
, vol.2
, pp. 829-841
-
-
Guha, R.1
-
10
-
-
33746931581
-
On outliers and activity cliffs - Why QSAR often disappoints
-
Maggiora, G. M. On outliers and activity cliffs-Why QSAR often disappoints J. Chem. Inf. Model. 2006, 46, 1535
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 1535
-
-
Maggiora, G.M.1
-
11
-
-
84876875741
-
Activity Cliffs: Facts or Artifacts?
-
Medina-Franco, J. L. Activity Cliffs: Facts or Artifacts? Chem. Biol. Drug Des. 2013, 81, 553-556
-
(2013)
Chem. Biol. Drug Des.
, vol.81
, pp. 553-556
-
-
Medina-Franco, J.L.1
-
12
-
-
84867231295
-
CASE Plots for the Chemotype-Based Activity and Selectivity Analysis: A CASE Study of Cyclooxygenase Inhibitors
-
Pérez-Villanueva, J.; Medina-Franco, J. L.; Méndez-Lucio, O.; Yoo, J.; Soria-Arteche, O.; Izquierdo, T.; Lozada, M. C.; Castillo, R. CASE Plots for the Chemotype-Based Activity and Selectivity Analysis: A CASE Study of Cyclooxygenase Inhibitors Chem. Biol. Drug Des. 2012, 80, 752-762
-
(2012)
Chem. Biol. Drug Des.
, vol.80
, pp. 752-762
-
-
Pérez-Villanueva, J.1
Medina-Franco, J.L.2
Méndez-Lucio, O.3
Yoo, J.4
Soria-Arteche, O.5
Izquierdo, T.6
Lozada, M.C.7
Castillo, R.8
-
13
-
-
84881119997
-
Activity landscape analysis, CoMFA and CoMSIA studies of pyrazole CB1 antagonists
-
Hernández-Vázquez, E.; Méndez-Lucio, O.; Hernández-Luis, F. Activity landscape analysis, CoMFA and CoMSIA studies of pyrazole CB1 antagonists Med. Chem. Res. 2013, 22, 4133-4145
-
(2013)
Med. Chem. Res.
, vol.22
, pp. 4133-4145
-
-
Hernández-Vázquez, E.1
Méndez-Lucio, O.2
Hernández-Luis, F.3
-
14
-
-
77957991633
-
Towards a systematic characterization of the antiprotozoal activity landscape of benzimidazole derivatives
-
Pérez-Villanueva, J.; Santos, R.; Hernández-Campos, A.; Giulianotti, M. A.; Castillo, R.; Medina-Franco, J. L. Towards a systematic characterization of the antiprotozoal activity landscape of benzimidazole derivatives Bioorg. Med. Chem. 2010, 18, 7380-7391
-
(2010)
Bioorg. Med. Chem.
, vol.18
, pp. 7380-7391
-
-
Pérez-Villanueva, J.1
Santos, R.2
Hernández-Campos, A.3
Giulianotti, M.A.4
Castillo, R.5
Medina-Franco, J.L.6
-
15
-
-
80053327464
-
Multitarget structure-activity relationships characterized by activity-difference maps and consensus similarity measure
-
Medina-Franco, J. L.; Yongye, A. B.; Pérez-Villanueva, J.; Houghten, R. A.; Martinez-Mayorga, K. Multitarget structure-activity relationships characterized by activity-difference maps and consensus similarity measure J. Chem. Inf. Model. 2011, 51, 2427-2439
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 2427-2439
-
-
Medina-Franco, J.L.1
Yongye, A.B.2
Pérez-Villanueva, J.3
Houghten, R.A.4
Martinez-Mayorga, K.5
-
16
-
-
84870013075
-
Design of a Three-Dimensional Multitarget Activity Landscape
-
de la Vega de Leon, A.; Bajorath, J. Design of a Three-Dimensional Multitarget Activity Landscape J. Chem. Inf. Model. 2012, 52, 2876-2883
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 2876-2883
-
-
De La Vega De Leon, A.1
Bajorath, J.2
-
17
-
-
84906303709
-
Activity cliffs in drug discovery: Dr Jekyll or Mr Hyde?
-
Cruz-Monteagudo, M.; Medina-Franco, J. L.; Pérez-Castillo, Y.; Nicolotti, O.; Cordeiro, M. N. D. S.; Borges, F. Activity cliffs in drug discovery: Dr Jekyll or Mr Hyde? Drug Discovery Today 2014, 19, 1069-1080
-
(2014)
Drug Discovery Today
, vol.19
, pp. 1069-1080
-
-
Cruz-Monteagudo, M.1
Medina-Franco, J.L.2
Pérez-Castillo, Y.3
Nicolotti, O.4
Cordeiro, M.N.D.S.5
Borges, F.6
-
18
-
-
84894248000
-
Rationalization of Activity Cliffs of a Sulfonamide Inhibitor of DNA Methyltransferases with Induced-Fit Docking
-
Medina-Franco, J.; Méndez-Lucio, O.; Yoo, J. Rationalization of Activity Cliffs of a Sulfonamide Inhibitor of DNA Methyltransferases with Induced-Fit Docking Int. J. Mol. Sci. 2014, 15, 3253-3261
-
(2014)
Int. J. Mol. Sci.
, vol.15
, pp. 3253-3261
-
-
Medina-Franco, J.1
Méndez-Lucio, O.2
Yoo, J.3
-
19
-
-
84872826468
-
Identifying Activity Cliff Generators of PPAR Ligands Using SAS Maps
-
Méndez-Lucio, O.; Pérez-Villanueva, J.; Castillo, R.; Medina-Franco, J. L. Identifying Activity Cliff Generators of PPAR Ligands Using SAS Maps Mol. Inf. 2012, 31, 837-846
-
(2012)
Mol. Inf.
, vol.31
, pp. 837-846
-
-
Méndez-Lucio, O.1
Pérez-Villanueva, J.2
Castillo, R.3
Medina-Franco, J.L.4
-
20
-
-
80052080825
-
From Activity Cliffs to Target-Specific Scoring Models and Pharmacophore Hypotheses
-
Seebeck, B.; Wagener, M.; Rarey, M. From Activity Cliffs to Target-Specific Scoring Models and Pharmacophore Hypotheses ChemMedChem. 2011, 6, 1630-1639
-
(2011)
ChemMedChem.
, vol.6
, pp. 1630-1639
-
-
Seebeck, B.1
Wagener, M.2
Rarey, M.3
-
21
-
-
84875479590
-
Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs
-
Desaphy, J.; Raimbaud, E.; Ducrot, P.; Rognan, D. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model. 2013, 53, 623-637
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 623-637
-
-
Desaphy, J.1
Raimbaud, E.2
Ducrot, P.3
Rognan, D.4
-
22
-
-
42449152858
-
The use of protein-ligand interaction fingerprints in docking
-
Brewerton, S. C. The use of protein-ligand interaction fingerprints in docking Curr. Opin. Drug Discovery Dev. 2008, 11, 356-364
-
(2008)
Curr. Opin. Drug Discovery Dev.
, vol.11
, pp. 356-364
-
-
Brewerton, S.C.1
-
23
-
-
82555187387
-
Crystal Structure-Based Virtual Screening for Fragment-like Ligands of the Human Histamine H1 Receptor
-
de Graaf, C.; Kooistra, A. J.; Vischer, H. F.; Katritch, V.; Kuijer, M.; Shiroishi, M.; Iwata, S.; Shimamura, T.; Stevens, R. C.; de Esch, I. J. P.; Leurs, R. Crystal Structure-Based Virtual Screening for Fragment-like Ligands of the Human Histamine H1 Receptor J. Med. Chem. 2011, 54, 8195-8206
-
(2011)
J. Med. Chem.
, vol.54
, pp. 8195-8206
-
-
De Graaf, C.1
Kooistra, A.J.2
Vischer, H.F.3
Katritch, V.4
Kuijer, M.5
Shiroishi, M.6
Iwata, S.7
Shimamura, T.8
Stevens, R.C.9
De Esch, I.J.P.10
Leurs, R.11
-
24
-
-
82255172411
-
Structure-Based Discovery of Allosteric Modulators of Two Related Class B G-Protein-Coupled Receptors
-
de Graaf, C.; Rein, C.; Piwnica, D.; Giordanetto, F.; Rognan, D. Structure-Based Discovery of Allosteric Modulators of Two Related Class B G-Protein-Coupled Receptors ChemMedChem. 2011, 6, 2159-2169
-
(2011)
ChemMedChem.
, vol.6
, pp. 2159-2169
-
-
De Graaf, C.1
Rein, C.2
Piwnica, D.3
Giordanetto, F.4
Rognan, D.5
-
25
-
-
84875710113
-
Small and colorful stones make beautiful mosaics: Fragment-based chemogenomics
-
de Graaf, C.; Vischer, H. F.; de Kloe, G. E.; Kooistra, A. J.; Nijmeijer, S.; Kuijer, M.; Verheij, M. H. P.; England, P. J.; van Muijlwijk-Koezen, J. E.; Leurs, R.; de Esch, I. J. P. Small and colorful stones make beautiful mosaics: fragment-based chemogenomics Drug Discovery Today 2013, 18, 323-330
-
(2013)
Drug Discovery Today
, vol.18
, pp. 323-330
-
-
De Graaf, C.1
Vischer, H.F.2
De Kloe, G.E.3
Kooistra, A.J.4
Nijmeijer, S.5
Kuijer, M.6
Verheij, M.H.P.7
England, P.J.8
Van Muijlwijk-Koezen, J.E.9
Leurs, R.10
De Esch, I.J.P.11
-
26
-
-
84881652938
-
A structural chemogenomics analysis of aminergic GPCRs: Lessons for histamine receptor ligand design
-
Kooistra, A. J.; Kuhne, S.; de Esch, I. J. P.; Leurs, R.; de Graaf, C. A structural chemogenomics analysis of aminergic GPCRs: lessons for histamine receptor ligand design Br. J. Pharmacol. 2013, 170, 101-126
-
(2013)
Br. J. Pharmacol.
, vol.170
, pp. 101-126
-
-
Kooistra, A.J.1
Kuhne, S.2
De Esch, I.J.P.3
Leurs, R.4
De Graaf, C.5
-
27
-
-
84893065058
-
KLIFS: A knowledge-based structural database to navigate kinase-ligand interaction space
-
van Linden, O. P.; Kooistra, A. J.; Leurs, R.; de Esch, I. J.; de Graaf, C. KLIFS: a knowledge-based structural database to navigate kinase-ligand interaction space J. Med. Chem. 2014, 57, 249-77
-
(2014)
J. Med. Chem.
, vol.57
, pp. 249-277
-
-
Van Linden, O.P.1
Kooistra, A.J.2
Leurs, R.3
De Esch, I.J.4
De Graaf, C.5
-
28
-
-
84920947777
-
Comprehensive Analysis of Three-Dimensional Activity Cliffs Formed by Kinase Inhibitors with Different Binding Modes and Cliff Mapping of Structural Analogs
-
Furtmann, N.; Hu, Y.; Bajorath, J. Comprehensive Analysis of Three-Dimensional Activity Cliffs Formed by Kinase Inhibitors with Different Binding Modes and Cliff Mapping of Structural Analogs J. Med. Chem. 2015, 58, 252-264
-
(2015)
J. Med. Chem.
, vol.58
, pp. 252-264
-
-
Furtmann, N.1
Hu, Y.2
Bajorath, J.3
-
29
-
-
38549115559
-
Binding MOAD, a high-quality protein-ligand database
-
Benson, M. L.; Smith, R. D.; Khazanov, N. A.; Dimcheff, B.; Beaver, J.; Dresslar, P.; Nerothin, J.; Carlson, H. A. Binding MOAD, a high-quality protein-ligand database Nucleic Acids Res. 2008, 36, D674-D678
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 674-D678
-
-
Benson, M.L.1
Smith, R.D.2
Khazanov, N.A.3
Dimcheff, B.4
Beaver, J.5
Dresslar, P.6
Nerothin, J.7
Carlson, H.A.8
-
30
-
-
23044480075
-
Binding MOAD (Mother of All Databases)
-
Liegi Hu, M. L. B.; Smith, R. D.; Lerner, M. G.; Carlson, H. A. Binding MOAD (Mother Of All Databases) Proteins: Struct., Funct., Bioinf. 2005, 60, 333-340
-
(2005)
Proteins: Struct., Funct., Bioinf.
, vol.60
, pp. 333-340
-
-
Liegi Hu, M.L.B.1
Smith, R.D.2
Lerner, M.G.3
Carlson, H.A.4
-
31
-
-
84923331194
-
-
MayaChemTools. (accessed Feb.)
-
Sud, M. MayaChemTools. http://www.MayaChemTools.org (accessed Feb. 2013).
-
(2013)
-
-
Sud, M.1
-
32
-
-
0000992784
-
Chemical similarity assessment through multilevel neighborhoods of atoms: Definition and comparison with the other descriptors
-
Filimonov, D.; Poroikov, V.; Borodina, Y.; Gloriozova, T. Chemical similarity assessment through multilevel neighborhoods of atoms: definition and comparison with the other descriptors J. Chem. Inf. Comput. Sci. 1999, 39, 666-670
-
(1999)
J. Chem. Inf. Comput. Sci.
, vol.39
, pp. 666-670
-
-
Filimonov, D.1
Poroikov, V.2
Borodina, Y.3
Gloriozova, T.4
-
33
-
-
0029404240
-
Electrotopological state indices for atom types: A novel combination of electronic, topological, and valence state information
-
Hall, L. H.; Kier, L. B. Electrotopological state indices for atom types: A novel combination of electronic, topological, and valence state information J. Chem. Inf. Comput. Sci. 1995, 35, 1039-1045
-
(1995)
J. Chem. Inf. Comput. Sci.
, vol.35
, pp. 1039-1045
-
-
Hall, L.H.1
Kier, L.B.2
-
34
-
-
77952772341
-
Extended-connectivity fingerprints
-
Rogers, D.; Hahn, M. Extended-connectivity fingerprints J. Chem. Inf. Model. 2010, 50, 742-754
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 742-754
-
-
Rogers, D.1
Hahn, M.2
-
35
-
-
0036827075
-
Reoptimization of MDL keys for use in drug discovery
-
Durant, J. L.; Leland, B. A.; Henry, D. R.; Nourse, J. G. Reoptimization of MDL keys for use in drug discovery J. Chem. Inf. Comput. Sci. 2002, 42, 1273-1280
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, pp. 1273-1280
-
-
Durant, J.L.1
Leland, B.A.2
Henry, D.R.3
Nourse, J.G.4
-
36
-
-
33845379303
-
Atom pairs as molecular features in structure-activity studies: Definition and applications
-
Carhart, R. E.; Smith, D. H.; Venkataraghavan, R. Atom pairs as molecular features in structure-activity studies: definition and applications J. Chem. Inf. Comput. Sci. 1985, 25, 64-73
-
(1985)
J. Chem. Inf. Comput. Sci.
, vol.25
, pp. 64-73
-
-
Carhart, R.E.1
Smith, D.H.2
Venkataraghavan, R.3
-
37
-
-
0003076470
-
Topological torsion: A new molecular descriptor for SAR applications. Comparison with other descriptors
-
Nilakantan, R.; Bauman, N.; Dixon, J. S.; Venkataraghavan, R. Topological torsion: a new molecular descriptor for SAR applications. Comparison with other descriptors J. Chem. Inf. Comput. Sci. 1987, 27, 82-85
-
(1987)
J. Chem. Inf. Comput. Sci.
, vol.27
, pp. 82-85
-
-
Nilakantan, R.1
Bauman, N.2
Dixon, J.S.3
Venkataraghavan, R.4
-
38
-
-
84952912906
-
Alignment-free pharmacophore patterns - A correlation-vector approach
-
In; Wiley-VCH Verlag GmbH & Co. KGaA
-
Renner, S.; Fechner, U.; Schneider, G. Alignment-free pharmacophore patterns-A correlation-vector approach. In Pharmacophores and Pharmacophore Searches; Wiley-VCH Verlag GmbH & Co. KGaA: 2006; pp 49-79.
-
(2006)
Pharmacophores and Pharmacophore Searches
, pp. 49-79
-
-
Renner, S.1
Fechner, U.2
Schneider, G.3
-
39
-
-
33845791138
-
Fuzzy tricentric pharmacophore fingerprints. 1. Topological fuzzy pharmacophore triplets and adapted molecular similarity scoring schemes
-
Bonachéra, F.; Parent, B.; Barbosa, F.; Froloff, N.; Horvath, D. Fuzzy tricentric pharmacophore fingerprints. 1. Topological fuzzy pharmacophore triplets and adapted molecular similarity scoring schemes J. Chem. Inf. Model. 2006, 46, 2457-2477
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 2457-2477
-
-
Bonachéra, F.1
Parent, B.2
Barbosa, F.3
Froloff, N.4
Horvath, D.5
-
40
-
-
0001368373
-
Etude Comparative de la Distribution Florale dans une Portion des Alpes et des Jura
-
Jaccard, P. Etude Comparative de la Distribution Florale dans une Portion des Alpes et des Jura Bull. Soc. Vaudoise Sci. Nat. 1901, 37, 547-579
-
(1901)
Bull. Soc. Vaudoise Sci. Nat.
, vol.37
, pp. 547-579
-
-
Jaccard, P.1
-
41
-
-
5344244908
-
Chemical Similarity Searching
-
Willett, P.; Barnard, J. M.; Downs, G. M. Chemical Similarity Searching J. Chem. Inf. Comput. Sci. 1998, 38, 983-996
-
(1998)
J. Chem. Inf. Comput. Sci.
, vol.38
, pp. 983-996
-
-
Willett, P.1
Barnard, J.M.2
Downs, G.M.3
-
42
-
-
10344230435
-
Molecular similarity: A key technique in molecular informatics
-
Bender, A.; Glen, R. C. Molecular similarity: a key technique in molecular informatics Org. Biomol. Chem. 2004, 2, 3204-3218
-
(2004)
Org. Biomol. Chem.
, vol.2
, pp. 3204-3218
-
-
Bender, A.1
Glen, R.C.2
-
43
-
-
84923358970
-
-
version 3.2.0.4; OpenEye Scientific Software, Inc. Santa Fe, NM, U.S.A
-
ROCS, version 3.2.0.4; OpenEye Scientific Software, Inc.: Santa Fe, NM, U.S.A. http://www.eyesopen.com.
-
ROCS
-
-
-
44
-
-
33846933784
-
Optimizing Fragment and Scaffold Docking by Use of Molecular Interaction Fingerprints
-
Marcou, G.; Rognan, D. Optimizing Fragment and Scaffold Docking by Use of Molecular Interaction Fingerprints J. Chem. Inf. Model. 2006, 47, 195-207
-
(2006)
J. Chem. Inf. Model.
, vol.47
, pp. 195-207
-
-
Marcou, G.1
Rognan, D.2
-
45
-
-
65249087355
-
Characterization of Activity Landscapes Using 2D and 3D Similarity Methods: Consensus Activity Cliffs
-
Medina-Franco, J. L.; Martinez-Mayorga, K.; Bender, A.; Marin, R. M.; Giulianotti, M. A.; Pinilla, C.; Houghten, R. A. Characterization of Activity Landscapes Using 2D and 3D Similarity Methods: Consensus Activity Cliffs J. Chem. Inf. Model. 2009, 49, 477-491
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 477-491
-
-
Medina-Franco, J.L.1
Martinez-Mayorga, K.2
Bender, A.3
Marin, R.M.4
Giulianotti, M.A.5
Pinilla, C.6
Houghten, R.A.7
-
46
-
-
79959717483
-
Consensus models of activity landscapes with multiple chemical, conformer, and property representations
-
Yongye, A. B.; Byler, K.; Santos, R.; Martinez-Mayorga, K.; Maggiora, G. M.; Medina-Franco, J. L. Consensus models of activity landscapes with multiple chemical, conformer, and property representations J. Chem. Inf. Model. 2011, 51, 1259-1270
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 1259-1270
-
-
Yongye, A.B.1
Byler, K.2
Santos, R.3
Martinez-Mayorga, K.4
Maggiora, G.M.5
Medina-Franco, J.L.6
-
47
-
-
84859270118
-
Classification of scaffold-hopping approaches
-
Sun, H. M.; Tawa, G.; Wallqvist, A. Classification of scaffold-hopping approaches Drug Discovery Today 2012, 17, 310-324
-
(2012)
Drug Discovery Today
, vol.17
, pp. 310-324
-
-
Sun, H.M.1
Tawa, G.2
Wallqvist, A.3
-
48
-
-
84874037909
-
Cyclic Systems Distribution Along Similarity Measures: Insights for an Application to Activity Landscape Modeling
-
Pérez-Villanueva, J.; Méndez-Lucio, O.; Soria-Arteche, O.; Izquierdo, T.; Concepcion Lozada, M.; Gloria-Greimel, W. A.; Medina-Franco, J. L. Cyclic Systems Distribution Along Similarity Measures: Insights for an Application to Activity Landscape Modeling Mol. Inf. 2013, 32, 179-190
-
(2013)
Mol. Inf.
, vol.32
, pp. 179-190
-
-
Pérez-Villanueva, J.1
Méndez-Lucio, O.2
Soria-Arteche, O.3
Izquierdo, T.4
Concepcion Lozada, M.5
Gloria-Greimel, W.A.6
Medina-Franco, J.L.7
-
50
-
-
68549096176
-
Identification of Inhibitors of Checkpoint Kinase 1 through Template Screening
-
Matthews, T. P.; Klair, S.; Burns, S.; Boxall, K.; Cherry, M.; Fisher, M.; Westwood, I. M.; Walton, M. I.; McHardy, T.; Cheung, K.-M. J.; Van Montfort, R.; Williams, D.; Aherne, G. W.; Garrett, M. D.; Reader, J.; Collins, I. Identification of Inhibitors of Checkpoint Kinase 1 through Template Screening J. Med. Chem. 2009, 52, 4810-4819
-
(2009)
J. Med. Chem.
, vol.52
, pp. 4810-4819
-
-
Matthews, T.P.1
Klair, S.2
Burns, S.3
Boxall, K.4
Cherry, M.5
Fisher, M.6
Westwood, I.M.7
Walton, M.I.8
McHardy, T.9
Cheung, K.-M.J.10
Van Montfort, R.11
Williams, D.12
Aherne, G.W.13
Garrett, M.D.14
Reader, J.15
Collins, I.16
-
51
-
-
77955653997
-
Discovery of a novel class of triazolones as Checkpoint Kinase inhibitors' - Hit to lead exploration
-
Oza, V.; Ashwell, S.; Brassil, P.; Breed, J.; Deng, C.; Ezhuthachan, J.; Haye, H.; Horn, C.; Janetka, J.; Lyne, P.; Newcombe, N.; Otterbien, L.; Pass, M.; Read, J.; Roswell, S.; Su, M.; Toader, D.; Yu, D.; Yu, Y.; Valentine, A.; Webborn, P.; White, A.; Zabludoff, S.; Zheng, X. Discovery of a novel class of triazolones as Checkpoint Kinase inhibitors' - 'Hit to lead exploration Bioorg. Med. Chem. Lett. 2010, 20, 5133-5138
-
(2010)
Bioorg. Med. Chem. Lett.
, vol.20
, pp. 5133-5138
-
-
Oza, V.1
Ashwell, S.2
Brassil, P.3
Breed, J.4
Deng, C.5
Ezhuthachan, J.6
Haye, H.7
Horn, C.8
Janetka, J.9
Lyne, P.10
Newcombe, N.11
Otterbien, L.12
Pass, M.13
Read, J.14
Roswell, S.15
Su, M.16
Toader, D.17
Yu, D.18
Yu, Y.19
Valentine, A.20
Webborn, P.21
White, A.22
Zabludoff, S.23
Zheng, X.24
more..
-
52
-
-
33846457931
-
Structural biology contributions to the discovery of drugs to treat chronic myelogenous leukaemia
-
Cowan-Jacob, S. W.; Fendrich, G.; Floersheimer, A.; Furet, P.; Liebetanz, J.; Rummel, G.; Rheinberger, P.; Centeleghe, M.; Fabbro, D.; Manley, P. W. Structural biology contributions to the discovery of drugs to treat chronic myelogenous leukaemia Acta Crystallogr., Sect. D: Biol. Crystallogr. 2007, 63, 80-93
-
(2007)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.63
, pp. 80-93
-
-
Cowan-Jacob, S.W.1
Fendrich, G.2
Floersheimer, A.3
Furet, P.4
Liebetanz, J.5
Rummel, G.6
Rheinberger, P.7
Centeleghe, M.8
Fabbro, D.9
Manley, P.W.10
-
53
-
-
77951689893
-
Analysis of Imatinib and Sorafenib Binding to p38α Compared with c-Abl and b-Raf Provides Structural Insights for Understanding the Selectivity of Inhibitors Targeting the DFG-Out Form of Protein Kinases
-
Namboodiri, H. V.; Bukhtiyarova, M.; Ramcharan, J.; Karpusas, M.; Lee, Y.; Springman, E. B. Analysis of Imatinib and Sorafenib Binding to p38α Compared with c-Abl and b-Raf Provides Structural Insights for Understanding the Selectivity of Inhibitors Targeting the DFG-Out Form of Protein Kinases Biochemistry 2010, 49, 3611-3618
-
(2010)
Biochemistry
, vol.49
, pp. 3611-3618
-
-
Namboodiri, H.V.1
Bukhtiyarova, M.2
Ramcharan, J.3
Karpusas, M.4
Lee, Y.5
Springman, E.B.6
-
54
-
-
31344478036
-
Triazolo[1,5-a]pyrimidines as novel CDK2 inhibitors: Protein structure-guided design and SAR
-
Richardson, C. M.; Williamson, D. S.; Parratt, M. J.; Borgognoni, J.; Cansfield, A. D.; Dokurno, P.; Francis, G. L.; Howes, R.; Moore, J. D.; Murray, J. B.; Robertson, A.; Surgenor, A. E.; Torrance, C. J. Triazolo[1,5-a]pyrimidines as novel CDK2 inhibitors: Protein structure-guided design and SAR Bioorg. Med. Chem. Lett. 2006, 16, 1353-1357
-
(2006)
Bioorg. Med. Chem. Lett.
, vol.16
, pp. 1353-1357
-
-
Richardson, C.M.1
Williamson, D.S.2
Parratt, M.J.3
Borgognoni, J.4
Cansfield, A.D.5
Dokurno, P.6
Francis, G.L.7
Howes, R.8
Moore, J.D.9
Murray, J.B.10
Robertson, A.11
Surgenor, A.E.12
Torrance, C.J.13
-
55
-
-
42149187593
-
Structure-guided discovery of cyclin-dependent kinase inhibitors
-
Fischmann, T. O.; Hruza, A.; Duca, J. S.; Ramanathan, L.; Mayhood, T.; Windsor, W. T.; Le, H. V.; Guzi, T. J.; Dwyer, M. P.; Paruch, K.; Doll, R. J.; Lees, E.; Parry, D.; Seghezzi, W.; Madison, V. Structure-guided discovery of cyclin-dependent kinase inhibitors Biopolymers 2008, 89, 372-379
-
(2008)
Biopolymers
, vol.89
, pp. 372-379
-
-
Fischmann, T.O.1
Hruza, A.2
Duca, J.S.3
Ramanathan, L.4
Mayhood, T.5
Windsor, W.T.6
Le, H.V.7
Guzi, T.J.8
Dwyer, M.P.9
Paruch, K.10
Doll, R.J.11
Lees, E.12
Parry, D.13
Seghezzi, W.14
Madison, V.15
-
56
-
-
52949141884
-
Modulation of kinase-inhibitor interactions by auxiliary protein binding: Crystallography studies on Aurora A interactions with VX-680 and with TPX2
-
Zhao, B.; Smallwood, A.; Yang, J.; Koretke, K.; Nurse, K.; Calamari, A.; Kirkpatrick, R. B.; Lai, Z. Modulation of kinase-inhibitor interactions by auxiliary protein binding: Crystallography studies on Aurora A interactions with VX-680 and with TPX2 Protein Sci. 2008, 17, 1791-1797
-
(2008)
Protein Sci.
, vol.17
, pp. 1791-1797
-
-
Zhao, B.1
Smallwood, A.2
Yang, J.3
Koretke, K.4
Nurse, K.5
Calamari, A.6
Kirkpatrick, R.B.7
Lai, Z.8
-
57
-
-
80054943801
-
Mutants of protein kinase A that mimic the ATP-binding site of Aurora kinase
-
Pflug, A.; de Oliveira, T. M.; Bossemeyer, D.; Engh, R. A. Mutants of protein kinase A that mimic the ATP-binding site of Aurora kinase Biochem. J. 2011, 440, 85-93
-
(2011)
Biochem. J.
, vol.440
, pp. 85-93
-
-
Pflug, A.1
De Oliveira, T.M.2
Bossemeyer, D.3
Engh, R.A.4
-
58
-
-
37549041341
-
Biphenyl amide p38 kinase inhibitors 1: Discovery and binding mode
-
Angell, R. M.; Bamborough, P.; Cleasby, A.; Cockerill, S. G.; Jones, K. L.; Mooney, C. J.; Somers, D. O.; Walker, A. L. Biphenyl amide p38 kinase inhibitors 1: Discovery and binding mode Bioorg. Med. Chem. Lett. 2008, 18, 318-323
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, pp. 318-323
-
-
Angell, R.M.1
Bamborough, P.2
Cleasby, A.3
Cockerill, S.G.4
Jones, K.L.5
Mooney, C.J.6
Somers, D.O.7
Walker, A.L.8
-
59
-
-
47749150617
-
Biphenyl amide p38 kinase inhibitors 3: Improvement of cellular and in vivo activity
-
Angell, R.; Aston, N. M.; Bamborough, P.; Buckton, J. B.; Cockerill, S.; deBoeck, S. J.; Edwards, C. D.; Holmes, D. S.; Jones, K. L.; Laine, D. I.; Patel, S.; Smee, P. A.; Smith, K. J.; Somers, D. O.; Walker, A. L. Biphenyl amide p38 kinase inhibitors 3: Improvement of cellular and in vivo activity Bioorg. Med. Chem. Lett. 2008, 18, 4428-4432
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, pp. 4428-4432
-
-
Angell, R.1
Aston, N.M.2
Bamborough, P.3
Buckton, J.B.4
Cockerill, S.5
Deboeck, S.J.6
Edwards, C.D.7
Holmes, D.S.8
Jones, K.L.9
Laine, D.I.10
Patel, S.11
Smee, P.A.12
Smith, K.J.13
Somers, D.O.14
Walker, A.L.15
-
60
-
-
18344395134
-
Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site
-
Pargellis, C.; Tong, L.; Churchill, L.; Cirillo, P. F.; Gilmore, T.; Graham, A. G.; Grob, P. M.; Hickey, E. R.; Moss, N.; Pav, S.; Regan, J. Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site Nat. Struct. Mol. Biol. 2002, 9, 268-272
-
(2002)
Nat. Struct. Mol. Biol.
, vol.9
, pp. 268-272
-
-
Pargellis, C.1
Tong, L.2
Churchill, L.3
Cirillo, P.F.4
Gilmore, T.5
Graham, A.G.6
Grob, P.M.7
Hickey, E.R.8
Moss, N.9
Pav, S.10
Regan, J.11
-
61
-
-
29244448317
-
Prevention of MKK6-Dependent Activation by Binding to p38α MAP Kinase
-
Sullivan, J. E.; Holdgate, G. A.; Campbell, D.; Timms, D.; Gerhardt, S.; Breed, J.; Breeze, A. L.; Bermingham, A.; Pauptit, R. A.; Norman, R. A.; Embrey, K. J.; Read, J.; VanScyoc, W. S.; Ward, W. H. J. Prevention of MKK6-Dependent Activation by Binding to p38α MAP Kinase Biochemistry 2005, 44, 16475-16490
-
(2005)
Biochemistry
, vol.44
, pp. 16475-16490
-
-
Sullivan, J.E.1
Holdgate, G.A.2
Campbell, D.3
Timms, D.4
Gerhardt, S.5
Breed, J.6
Breeze, A.L.7
Bermingham, A.8
Pauptit, R.A.9
Norman, R.A.10
Embrey, K.J.11
Read, J.12
Vanscyoc, W.S.13
Ward, W.H.J.14
-
62
-
-
33846899405
-
Molecular Recognition of Protein Kinase Binding Pockets for Design of Potent and Selective Kinase Inhibitors
-
Liao, J. J.-L. Molecular Recognition of Protein Kinase Binding Pockets for Design of Potent and Selective Kinase Inhibitors J. Med. Chem. 2007, 50, 409-424
-
(2007)
J. Med. Chem.
, vol.50
, pp. 409-424
-
-
Liao, J.J.-L.1
-
63
-
-
33747872588
-
Molecular complexes at a glance: Automated generation of two-dimensional complex diagrams
-
Stierand, K.; Maaß, P. C.; Rarey, M. Molecular complexes at a glance: automated generation of two-dimensional complex diagrams Bioinformatics 2006, 22, 1710-1716
-
(2006)
Bioinformatics
, vol.22
, pp. 1710-1716
-
-
Stierand, K.1
Maaß, P.C.2
Rarey, M.3
-
64
-
-
84923347999
-
-
PoseViewWeb 1.97.0. (accessed Feb.)
-
PoseViewWeb 1.97.0. http://poseview.zbh.uni-hamburg.de (accessed Feb. 2014).
-
(2014)
-
-
-
65
-
-
34548825448
-
Targeting Protein Multiple Conformations: A Structure-Based Strategy for Kinase Drug Design
-
Liao, J. J.-L.; Andrews, R. C. Targeting Protein Multiple Conformations: A Structure-Based Strategy for Kinase Drug Design Curr. Top. Med. Chem. 2007, 7, 1394-1407
-
(2007)
Curr. Top. Med. Chem.
, vol.7
, pp. 1394-1407
-
-
Liao, J.J.-L.1
Andrews, R.C.2
-
66
-
-
84880177115
-
Type II kinase inhibitors: An opportunity in cancer for rational design
-
Blanc, J.; Geney, R.; Menet, C. Type II kinase inhibitors: an opportunity in cancer for rational design Anticancer Agents Med. Chem. 2013, 13, 731-47
-
(2013)
Anticancer Agents Med. Chem.
, vol.13
, pp. 731-747
-
-
Blanc, J.1
Geney, R.2
Menet, C.3
-
67
-
-
34547921999
-
Synthesis and SAR of p38α MAP kinase inhibitors based on heterobicyclic scaffolds
-
Murali Dhar, T. G.; Wrobleski, S. T.; Lin, S.; Furch, J. A.; Nirschl, D. S.; Fan, Y.; Todderud, G.; Pitt, S.; Doweyko, A. M.; Sack, J. S.; Mathur, A.; McKinnon, M.; Barrish, J. C.; Dodd, J. H.; Schieven, G. L.; Leftheris, K. Synthesis and SAR of p38α MAP kinase inhibitors based on heterobicyclic scaffolds Bioorg. Med. Chem. Lett. 2007, 17, 5019-5024
-
(2007)
Bioorg. Med. Chem. Lett.
, vol.17
, pp. 5019-5024
-
-
Murali Dhar, T.G.1
Wrobleski, S.T.2
Lin, S.3
Furch, J.A.4
Nirschl, D.S.5
Fan, Y.6
Todderud, G.7
Pitt, S.8
Doweyko, A.M.9
Sack, J.S.10
Mathur, A.11
McKinnon, M.12
Barrish, J.C.13
Dodd, J.H.14
Schieven, G.L.15
Leftheris, K.16
-
68
-
-
78650514164
-
Highly selective c-Jun N-terminal kinase (JNK) 2 and 3 inhibitors with in vitro CNS-like pharmacokinetic properties prevent neurodegeneration
-
Probst, G. D.; Bowers, S.; Sealy, J. M.; Truong, A. P.; Hom, R. K.; Galemmo, R. A., Jr; Konradi, A. W.; Sham, H. L.; Quincy, D. A.; Pan, H.; Yao, N.; Lin, M.; Toth, G.; Artis, D. R.; Zmolek, W.; Wong, K.; Qin, A.; Lorentzen, C.; Nakamura, D. F.; Quinn, K. P.; Sauer, J.-M.; Powell, K.; Ruslim, L.; Wright, S.; Chereau, D.; Ren, Z.; Anderson, J. P.; Bard, F.; Yednock, T. A.; Griswold-Prenner, I. Highly selective c-Jun N-terminal kinase (JNK) 2 and 3 inhibitors with in vitro CNS-like pharmacokinetic properties prevent neurodegeneration Bioorg. Med. Chem. Lett. 2011, 21, 315-319
-
(2011)
Bioorg. Med. Chem. Lett.
, vol.21
, pp. 315-319
-
-
Probst, G.D.1
Bowers, S.2
Sealy, J.M.3
Truong, A.P.4
Hom, R.K.5
Galemmo, R.A.6
Konradi, A.W.7
Sham, H.L.8
Quincy, D.A.9
Pan, H.10
Yao, N.11
Lin, M.12
Toth, G.13
Artis, D.R.14
Zmolek, W.15
Wong, K.16
Qin, A.17
Lorentzen, C.18
Nakamura, D.F.19
Quinn, K.P.20
Sauer, J.-M.21
Powell, K.22
Ruslim, L.23
Wright, S.24
Chereau, D.25
Ren, Z.26
Anderson, J.P.27
Bard, F.28
Yednock, T.A.29
Griswold-Prenner, I.30
more..
-
69
-
-
34548475073
-
Design, Synthesis, and Evaluation of Orally Active Benzimidazoles and Benzoxazoles as Vascular Endothelial Growth Factor-2 Receptor Tyrosine Kinase Inhibitors
-
Potashman, M. H.; Bready, J.; Coxon, A.; DeMelfi, T. M.; DiPietro, L.; Doerr, N.; Elbaum, D.; Estrada, J.; Gallant, P.; Germain, J.; Gu, Y.; Harmange, J.-C.; Kaufman, S. A.; Kendall, R.; Kim, J. L.; Kumar, G. N.; Long, A. M.; Neervannan, S.; Patel, V. F.; Polverino, A.; Rose, P.; van der Plas, S.; Whittington, D.; Zanon, R.; Zhao, H. Design, Synthesis, and Evaluation of Orally Active Benzimidazoles and Benzoxazoles as Vascular Endothelial Growth Factor-2 Receptor Tyrosine Kinase Inhibitors J. Med. Chem. 2007, 50, 4351-4373
-
(2007)
J. Med. Chem.
, vol.50
, pp. 4351-4373
-
-
Potashman, M.H.1
Bready, J.2
Coxon, A.3
Demelfi, T.M.4
Dipietro, L.5
Doerr, N.6
Elbaum, D.7
Estrada, J.8
Gallant, P.9
Germain, J.10
Gu, Y.11
Harmange, J.-C.12
Kaufman, S.A.13
Kendall, R.14
Kim, J.L.15
Kumar, G.N.16
Long, A.M.17
Neervannan, S.18
Patel, V.F.19
Polverino, A.20
Rose, P.21
Van Der Plas, S.22
Whittington, D.23
Zanon, R.24
Zhao, H.25
more..
-
70
-
-
47749106789
-
Biphenyl amide p38 kinase inhibitors 4: DFG-in and DFG-out binding modes
-
Angell, R. M.; Angell, T. D.; Bamborough, P.; Bamford, M. J.; Chung, C.-w.; Cockerill, S. G.; Flack, S. S.; Jones, K. L.; Laine, D. I.; Longstaff, T.; Ludbrook, S.; Pearson, R.; Smith, K. J.; Smee, P. A.; Somers, D. O.; Walker, A. L. Biphenyl amide p38 kinase inhibitors 4: DFG-in and DFG-out binding modes Bioorg. Med. Chem. Lett. 2008, 18, 4433-4437
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, pp. 4433-4437
-
-
Angell, R.M.1
Angell, T.D.2
Bamborough, P.3
Bamford, M.J.4
Chung, C.-W.5
Cockerill, S.G.6
Flack, S.S.7
Jones, K.L.8
Laine, D.I.9
Longstaff, T.10
Ludbrook, S.11
Pearson, R.12
Smith, K.J.13
Smee, P.A.14
Somers, D.O.15
Walker, A.L.16
-
71
-
-
67649995940
-
Development of a Fluorescent-Tagged Kinase Assay System for the Detection and Characterization of Allosteric Kinase Inhibitors
-
Simard, J. R.; Getlik, M.; Grutter, C.; Pawar, V.; Wulfert, S.; Rabiller, M.; Rauh, D. Development of a Fluorescent-Tagged Kinase Assay System for the Detection and Characterization of Allosteric Kinase Inhibitors J. Am. Chem. Soc. 2009, 131, 13286-13296
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 13286-13296
-
-
Simard, J.R.1
Getlik, M.2
Grutter, C.3
Pawar, V.4
Wulfert, S.5
Rabiller, M.6
Rauh, D.7
-
72
-
-
42149090634
-
Structure-Activity Landscape Index: Identifying and Quantifying Activity Cliffs
-
Guha, R.; Van Drie, J. H. Structure-Activity Landscape Index: Identifying and Quantifying Activity Cliffs J. Chem. Inf. Model. 2008, 48, 646-658
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 646-658
-
-
Guha, R.1
Van Drie, J.H.2
-
73
-
-
36148989137
-
Quantifying the Nature of Structure-Activity Relationships
-
Peltason, L.; Bajorath, J.; Index, S. A. R. Quantifying the Nature of Structure-Activity Relationships J. Med. Chem. 2007, 50, 5571-5578
-
(2007)
J. Med. Chem.
, vol.50
, pp. 5571-5578
-
-
Peltason, L.1
Bajorath, J.2
Index, S.A.R.3
|