-
1
-
-
0032987478
-
Membrane protein folding and stability: Physical principles
-
S.H. White, and W.C. Wimley Membrane protein folding and stability: Physical principles Annu Rev Biophys Biomol Struct 28 1999 319 365
-
(1999)
Annu Rev Biophys Biomol Struct
, vol.28
, pp. 319-365
-
-
White, S.H.1
Wimley, W.C.2
-
2
-
-
0033790343
-
Helical membrane protein folding, stability, and evolution
-
J.L. Popot, and D.M. Engelman Helical membrane protein folding, stability, and evolution Annu Rev Biochem 69 2000 881 922
-
(2000)
Annu Rev Biochem
, vol.69
, pp. 881-922
-
-
Popot, J.L.1
Engelman, D.M.2
-
3
-
-
33646902110
-
Folding and stability of α-helical integral membrane proteins
-
K.R. MacKenzie Folding and stability of α-helical integral membrane proteins Chem Rev 106 2006 1931 1977
-
(2006)
Chem Rev
, vol.106
, pp. 1931-1977
-
-
MacKenzie, K.R.1
-
4
-
-
0000073862
-
Mutational analysis of protein folding and stability
-
Creighton TE, editor, New York: W. H. Freeman
-
Goldenberg DP. Mutational analysis of protein folding and stability. In: Creighton TE, editor. Protein Folding. New York: W. H. Freeman; 1992. p. 353-403.
-
(1992)
Protein Folding
, pp. 353-403
-
-
Goldenberg, D.P.1
-
5
-
-
0026800672
-
Analysis of the heat capacity dependence of protein folding
-
A.S. Yang, K.A. Sharp, and B. Honig Analysis of the heat capacity dependence of protein folding J Mol Biol 227 1992 889 900
-
(1992)
J Mol Biol
, vol.227
, pp. 889-900
-
-
Yang, A.S.1
Sharp, K.A.2
Honig, B.3
-
6
-
-
61849083035
-
Methods for measuring the thermodynamic stability of membrane proteins
-
H. Hong, N.H. Joh, J.U. Bowie, and L.K. Tamm Methods for measuring the thermodynamic stability of membrane proteins Methods Enzymol 455 2009 213 236
-
(2009)
Methods Enzymol
, vol.455
, pp. 213-236
-
-
Hong, H.1
Joh, N.H.2
Bowie, J.U.3
Tamm, L.K.4
-
7
-
-
0017870745
-
Phase transitions of the purple membranes of Halobacterium halobium
-
M.B. Jackson, and J.M. Sturtevant Phase transitions of the purple membranes of Halobacterium halobium Biochemistry 17 1978 911 915
-
(1978)
Biochemistry
, vol.17
, pp. 911-915
-
-
Jackson, M.B.1
Sturtevant, J.M.2
-
8
-
-
0031010621
-
A method for assessing the stability of a membrane protein
-
F.W. Lau, and J.U. Bowie A method for assessing the stability of a membrane protein Biochemistry 36 1997 5884 5892
-
(1997)
Biochemistry
, vol.36
, pp. 5884-5892
-
-
Lau, F.W.1
Bowie, J.U.2
-
9
-
-
0023583873
-
Refolding of bacteriorhodopsin in lipid bilayers. A thermodynamically controlled two-stage process
-
J.-L. Popot, S.-E. Gerchman, and D.M. Engelman Refolding of bacteriorhodopsin in lipid bilayers. A thermodynamically controlled two-stage process J Mol Biol 198 1987 655 676
-
(1987)
J Mol Biol
, vol.198
, pp. 655-676
-
-
Popot, J.-L.1
Gerchman, S.-E.2
Engelman, D.M.3
-
10
-
-
0022819964
-
Reformation of crystalline purple membrane from purified bacteriorhodopsin fragments
-
J.L. Popot, J. Trewhella, and D.M. Engelman Reformation of crystalline purple membrane from purified bacteriorhodopsin fragments EMBO J 5 1986 3039 3044
-
(1986)
EMBO J
, vol.5
, pp. 3039-3044
-
-
Popot, J.L.1
Trewhella, J.2
Engelman, D.M.3
-
11
-
-
0028931922
-
In vivo assembly of rhodopsin from expressed polypeptide fragments
-
K.D. Ridge, S.S.J. Lee, and L.L. Yao In vivo assembly of rhodopsin from expressed polypeptide fragments Proc Natl Acad Sci U S A 92 1995 3204 3208
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 3204-3208
-
-
Ridge, K.D.1
Lee, S.S.J.2
Yao, L.L.3
-
12
-
-
0025310534
-
In vivo expression of the lacY gene in two segments leads to functional lac permease
-
E. Bibi, and H. Kaback In vivo expression of the lacY gene in two segments leads to functional lac permease Proc Natl Acad Sci U S A 87 1990 4325 4329
-
(1990)
Proc Natl Acad Sci U S A
, vol.87
, pp. 4325-4329
-
-
Bibi, E.1
Kaback, H.2
-
13
-
-
0033572634
-
Topology studies with biosynthetic fragments identify interacting transmembrane regions of the human red-cell anion exchanger (band 3; AE1)
-
J.D. Groves, and M.J.A. Tanner Topology studies with biosynthetic fragments identify interacting transmembrane regions of the human red-cell anion exchanger (band 3; AE1) Biochem J 344 1999 687 697
-
(1999)
Biochem J
, vol.344
, pp. 687-697
-
-
Groves, J.D.1
Tanner, M.J.A.2
-
14
-
-
0030010702
-
In vivo membrane assembly of split variants of the E.coli outer membrane protein OmpA
-
R. Koebnik In vivo membrane assembly of split variants of the E.coli outer membrane protein OmpA EMBO J 15 1996 3529 3537
-
(1996)
EMBO J
, vol.15
, pp. 3529-3537
-
-
Koebnik, R.1
-
15
-
-
84878723802
-
In vitro reconstitution of lipid-dependent dual topology and post-assembly topological switching of a membrane proteint
-
H. Vitrac, M. Bogdanov, and W. Dowhan In vitro reconstitution of lipid-dependent dual topology and post-assembly topological switching of a membrane proteint Proc Natl Acad Sci U S A 110 2013 9338 9343
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 9338-9343
-
-
Vitrac, H.1
Bogdanov, M.2
Dowhan, W.3
-
16
-
-
77951903021
-
Membrane protein assembly into nanodiscs
-
T.H. Bayburt, and S.G. Sligar Membrane protein assembly into nanodiscs FEBS Lett 584 2010 1721 1727
-
(2010)
FEBS Lett
, vol.584
, pp. 1721-1727
-
-
Bayburt, T.H.1
Sligar, S.G.2
-
17
-
-
34447630299
-
Functional cell-free synthesis of a seven helix membrane protein: In situ insertion of bacteriorhodpsin into liposomes
-
R. Kalmbach, I. Chizhov, M.C. Schumacher, T. Friedrich, E. Bamberg, and M. Engelhard Functional cell-free synthesis of a seven helix membrane protein: In situ insertion of bacteriorhodpsin into liposomes J Mol Biol 371 2007 639 648
-
(2007)
J Mol Biol
, vol.371
, pp. 639-648
-
-
Kalmbach, R.1
Chizhov, I.2
Schumacher, M.C.3
Friedrich, T.4
Bamberg, E.5
Engelhard, M.6
-
18
-
-
71549135217
-
Cell-ree translation of integral membrane proteins in unilamelar liposomes
-
M.A. Goren, A. Nozawa, S.I. Makino, R.L. Wrobel, and B.G. Fox Cell-ree translation of integral membrane proteins in unilamelar liposomes Methods Enzymol 463 2009 647 673
-
(2009)
Methods Enzymol
, vol.463
, pp. 647-673
-
-
Goren, M.A.1
Nozawa, A.2
Makino, S.I.3
Wrobel, R.L.4
Fox, B.G.5
-
19
-
-
84866666741
-
The cell-free integration of a polytopic mitochondrial membrane protein into liposomes occurs cotranslationally and in a lipid-dependent manner
-
A.R. Long, C.C. O'Brian, and N.N. Alder The cell-free integration of a polytopic mitochondrial membrane protein into liposomes occurs cotranslationally and in a lipid-dependent manner PLoS One 7 2012 e46332
-
(2012)
PLoS One
, vol.7
, pp. e46332
-
-
Long, A.R.1
O'Brian, C.C.2
Alder, N.N.3
-
20
-
-
84865610176
-
Characterization of co-translationally formed nanodisc complexes with small multidrug transporters, proteorhodopsin, and with the E. coli MraY translocase
-
C. Roos, M. Zocher, D. Müller, D. Münch, T. Schneider, and H.G. Sahl Characterization of co-translationally formed nanodisc complexes with small multidrug transporters, proteorhodopsin, and with the E. coli MraY translocase Biochim Biophys Acta 2012 1818 3098 3106
-
(1818)
Biochim Biophys Acta
, vol.2012
, pp. 3098-3106
-
-
Roos, C.1
Zocher, M.2
Müller, D.3
Münch, D.4
Schneider, T.5
Sahl, H.G.6
-
21
-
-
84857327599
-
Cell-free synthesis of cytochrome bo3 ubiquinol oxidase in artificial membranes
-
A.A. Yildiz, W. Knoll, R.B. Gennis, and E.K. Sinner Cell-free synthesis of cytochrome bo3 ubiquinol oxidase in artificial membranes Anal Biochem 423 2012 39 45
-
(2012)
Anal Biochem
, vol.423
, pp. 39-45
-
-
Yildiz, A.A.1
Knoll, W.2
Gennis, R.B.3
Sinner, E.K.4
-
23
-
-
0005667254
-
On the folding and insertion of globular membrane proteins
-
Wetlaufer DB, editor. Boulder: Westview Press
-
Engelman DM, Steitz TA. On the folding and insertion of globular membrane proteins. In: Wetlaufer DB, editor. The Protein Folding Problem. Boulder: Westview Press; 1984. p. 87-113.
-
(1984)
The Protein Folding Problem
, pp. 87-113
-
-
Engelman, D.M.1
Steitz, T.A.2
-
24
-
-
0030005250
-
Solvation energies of amino acid sidechains and backbone in a family of host-guest pentapeptides
-
W.C. Wimley, T.P. Creamer, and S.H. White Solvation energies of amino acid sidechains and backbone in a family of host-guest pentapeptides Biochemistry 35 1996 5109 5124
-
(1996)
Biochemistry
, vol.35
, pp. 5109-5124
-
-
Wimley, W.C.1
Creamer, T.P.2
White, S.H.3
-
25
-
-
0029738872
-
Experimentally determined hydrophobicity scale for proteins at membrane interfaces
-
W.C. Wimley, and S.H. White Experimentally determined hydrophobicity scale for proteins at membrane interfaces Nat Struct Biol 3 1996 842 848
-
(1996)
Nat Struct Biol
, vol.3
, pp. 842-848
-
-
Wimley, W.C.1
White, S.H.2
-
26
-
-
0029864591
-
A direct measurement of salt-bridge solvation energies using a peptide model system: Implications for protein stability
-
W.C. Wimley, K. Gawrisch, T.P. Creamer, and S.H. White A direct measurement of salt-bridge solvation energies using a peptide model system: Implications for protein stability Proc Natl Acad Sci U S A 93 1996 2985 2990
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 2985-2990
-
-
Wimley, W.C.1
Gawrisch, K.2
Creamer, T.P.3
White, S.H.4
-
27
-
-
0000398347
-
Empirical correlation between hydrophobic free energy and aqueous cavity surface area
-
J.A. Reynolds, D.B. Gilbert, and C. Tanford Empirical correlation between hydrophobic free energy and aqueous cavity surface area Proc Natl Acad Sci U S A 71 1974 2925 2927
-
(1974)
Proc Natl Acad Sci U S A
, vol.71
, pp. 2925-2927
-
-
Reynolds, J.A.1
Gilbert, D.B.2
Tanford, C.3
-
28
-
-
0032540234
-
Folding of beta-sheet membrane proteins: A hydrophobic hexapeptide model
-
W.C. Wimley, K. Hristova, A.S. Ladokhin, L. Silvestro, P.H. Axelsen, and S.H. White Folding of beta-sheet membrane proteins: A hydrophobic hexapeptide model J Mol Biol 277 1998 1091 1110
-
(1998)
J Mol Biol
, vol.277
, pp. 1091-1110
-
-
Wimley, W.C.1
Hristova, K.2
Ladokhin, A.S.3
Silvestro, L.4
Axelsen, P.H.5
White, S.H.6
-
29
-
-
0033613815
-
Folding of amphipathic alpha-helices on membranes: Energetics of helix formation by melittin
-
A.S. Ladokhin, and S.H. White Folding of amphipathic alpha-helices on membranes: Energetics of helix formation by melittin J Mol Biol 285 1999 1363 1369
-
(1999)
J Mol Biol
, vol.285
, pp. 1363-1369
-
-
Ladokhin, A.S.1
White, S.H.2
-
30
-
-
0030736114
-
Free energy of amide hydrogen bond formation in vacuum, in water, and in liquid alkane solution
-
N. Ben-Tal, D. Sitkoff, I.A. Topol, A.S. Yang, S.K. Burt, and B. Honig Free energy of amide hydrogen bond formation in vacuum, in water, and in liquid alkane solution J Phys Chem B 101 1997 450 457
-
(1997)
J Phys Chem B
, vol.101
, pp. 450-457
-
-
Ben-Tal, N.1
Sitkoff, D.2
Topol, I.A.3
Yang, A.S.4
Burt, S.K.5
Honig, B.6
-
31
-
-
0029669955
-
Free energy determinants of alpha-helix insertion into lipid bilayers
-
N. Ben-Tal, A. Ben-Shaul, A. Nicholls, and B. Honig Free energy determinants of alpha-helix insertion into lipid bilayers Biophys J 70 1996 1803 1812
-
(1996)
Biophys J
, vol.70
, pp. 1803-1812
-
-
Ben-Tal, N.1
Ben-Shaul, A.2
Nicholls, A.3
Honig, B.4
-
32
-
-
84855457273
-
Hydrogen-bond energetics drive helix formation in membrane interfaces
-
P.F. Almeida, A.S. Ladokhin, and S.H. White Hydrogen-bond energetics drive helix formation in membrane interfaces Biochim Biophys Acta 2012 1818 178 182
-
(1818)
Biochim Biophys Acta
, vol.2012
, pp. 178-182
-
-
Almeida, P.F.1
Ladokhin, A.S.2
White, S.H.3
-
33
-
-
0035812599
-
Energetics, stability, and prediction of transmembrane helices
-
S. Jayasinghe, K. Hristova, and S.H. White Energetics, stability, and prediction of transmembrane helices J Mol Biol 312 2001 927 934
-
(2001)
J Mol Biol
, vol.312
, pp. 927-934
-
-
Jayasinghe, S.1
Hristova, K.2
White, S.H.3
-
34
-
-
0015511364
-
Red cell membrane glycoprotein: Amino acid sequence of an intramembranous region
-
J.P. Segrest, R.L. Jackson, V.T. Marchesi, R.B. Guyer, and W. Terry Red cell membrane glycoprotein: Amino acid sequence of an intramembranous region Biochem Biophys Res Commun 49 1972 964 969
-
(1972)
Biochem Biophys Res Commun
, vol.49
, pp. 964-969
-
-
Segrest, J.P.1
Jackson, R.L.2
Marchesi, V.T.3
Guyer, R.B.4
Terry, W.5
-
35
-
-
29144532994
-
Characterizing molecular interactions in different bacteriorhodopsin assemblies by single-molecule force spectroscopy
-
K. Sapra, S. Besir, D. Oesterhelt, and D. Muller Characterizing molecular interactions in different bacteriorhodopsin assemblies by single-molecule force spectroscopy J Mol Biol 355 2006 640 650
-
(2006)
J Mol Biol
, vol.355
, pp. 640-650
-
-
Sapra, K.1
Besir, S.2
Oesterhelt, D.3
Muller, D.4
-
36
-
-
0034616309
-
Unfolding pathways of individual bacteriorhodopsins
-
F. Oesterhelt, D. Oesterhelt, M. Pfeiffer, A. Engel, H.E. Gaub, and D.J. Muller Unfolding pathways of individual bacteriorhodopsins Science 288 2000 143 146
-
(2000)
Science
, vol.288
, pp. 143-146
-
-
Oesterhelt, F.1
Oesterhelt, D.2
Pfeiffer, M.3
Engel, A.4
Gaub, H.E.5
Muller, D.J.6
-
37
-
-
4244116139
-
Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach
-
C. Jarzynski Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach Phys Rev E 56 1997 5018 5035
-
(1997)
Phys Rev E
, vol.56
, pp. 5018-5035
-
-
Jarzynski, C.1
-
38
-
-
0036932510
-
Stability of bacteriorhodopsin α-helices and loops analyzed by single-molecule force spectroscopy
-
D.J. Müller, M. Kessler, F. Oesterhelt, C. Möller, D. Oesterhelt, and H. Gaub Stability of bacteriorhodopsin α-helices and loops analyzed by single-molecule force spectroscopy Biophys J 83 2002 3578 3588
-
(2002)
Biophys J
, vol.83
, pp. 3578-3588
-
-
Müller, D.J.1
Kessler, M.2
Oesterhelt, F.3
Möller, C.4
Oesterhelt, D.5
Gaub, H.6
-
39
-
-
80053306385
-
In silico partitioning and transmembrane insertion of hydrophobic peptides under equilibrium conditions
-
J.P. Ulmschneider, J.C. Smith, S.H. White, and M.B. Ulmschneider In silico partitioning and transmembrane insertion of hydrophobic peptides under equilibrium conditions J Am Chem Soc 133 2011 15487 15495
-
(2011)
J Am Chem Soc
, vol.133
, pp. 15487-15495
-
-
Ulmschneider, J.P.1
Smith, J.C.2
White, S.H.3
Ulmschneider, M.B.4
-
41
-
-
84903696835
-
Absorption and folding of melittin onto lipid bilayer membranes via unbiased atomic detail microsecond molecular dynamics simulation
-
C.H. Chen, G. Wiedman, A. Khan, and M.B. Ulmschneider Absorption and folding of melittin onto lipid bilayer membranes via unbiased atomic detail microsecond molecular dynamics simulation Biochem Biophys Acta 1838 2014 2243 2249
-
(2014)
Biochem Biophys Acta
, vol.1838
, pp. 2243-2249
-
-
Chen, C.H.1
Wiedman, G.2
Khan, A.3
Ulmschneider, M.B.4
-
42
-
-
0025249842
-
Membrane protein folding and oligomerization: The 2-stage model
-
J.L. Popot, and D.M. Engelman Membrane protein folding and oligomerization: The 2-stage model Biochemistry 29 1990 4031 4037
-
(1990)
Biochemistry
, vol.29
, pp. 4031-4037
-
-
Popot, J.L.1
Engelman, D.M.2
-
43
-
-
0017251379
-
Subunit structure of human erythrocyte glycophorin A
-
H. Furthmayr, and V.T. Marchesi Subunit structure of human erythrocyte glycophorin A Biochemistry 15 1976 1137 1144
-
(1976)
Biochemistry
, vol.15
, pp. 1137-1144
-
-
Furthmayr, H.1
Marchesi, V.T.2
-
44
-
-
0024557054
-
Synthetic peptides mimic the assembly of transmembrane glycoproteins
-
B.-J. Bormann, W.J. Knowles, and V.T. Marchesi Synthetic peptides mimic the assembly of transmembrane glycoproteins J Biol Chem 264 1989 4033 4037
-
(1989)
J Biol Chem
, vol.264
, pp. 4033-4037
-
-
Bormann, B.-J.1
Knowles, W.J.2
Marchesi, V.T.3
-
45
-
-
0027050182
-
Sequence specificity in the dimerization of transmembrane α-helices
-
M.A. Lemmon, J.M. Flanagan, H.R. Treutlein, J. Zhang, and D.M. Engelman Sequence specificity in the dimerization of transmembrane α-helices Biochemistry 31 1992 12719 12725
-
(1992)
Biochemistry
, vol.31
, pp. 12719-12725
-
-
Lemmon, M.A.1
Flanagan, J.M.2
Treutlein, H.R.3
Zhang, J.4
Engelman, D.M.5
-
46
-
-
0026686793
-
Glycophorin A dimerization is driven by specific interactions between transmembrane α-helices
-
M.A. Lemmon, J.M. Flanagan, J.F. Hunt, B.D. Adair, B.-J. Bormann, and C.E. Dempsey Glycophorin A dimerization is driven by specific interactions between transmembrane α-helices J Biol Chem 267 1992 7683 7689
-
(1992)
J Biol Chem
, vol.267
, pp. 7683-7689
-
-
Lemmon, M.A.1
Flanagan, J.M.2
Hunt, J.F.3
Adair, B.D.4
Bormann, B.-J.5
Dempsey, C.E.6
-
47
-
-
0030932407
-
A transmembrane helix dimer: Structure and implications
-
K.R. MacKenzie, J.H. Prestegard, and D.M. Engelman A transmembrane helix dimer: Structure and implications Science 276 1997 131 133
-
(1997)
Science
, vol.276
, pp. 131-133
-
-
MacKenzie, K.R.1
Prestegard, J.H.2
Engelman, D.M.3
-
48
-
-
0030575833
-
Dimerisation of the glycophorin A transmembrane segment in membranes probed with the ToxR transcription activator
-
D. Langosch, B. Brosig, H. Kolmar, and H.J. Fritz Dimerisation of the glycophorin A transmembrane segment in membranes probed with the ToxR transcription activator J Mol Biol 263 1996 525 530
-
(1996)
J Mol Biol
, vol.263
, pp. 525-530
-
-
Langosch, D.1
Brosig, B.2
Kolmar, H.3
Fritz, H.J.4
-
49
-
-
0026567907
-
Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect
-
A.E. Eriksson, W.A. Baase, X.J. Zhang, D.W. Heinz, M. Blaber, and E.P. Baldwin Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect Science 255 1992 178 183
-
(1992)
Science
, vol.255
, pp. 178-183
-
-
Eriksson, A.E.1
Baase, W.A.2
Zhang, X.J.3
Heinz, D.W.4
Blaber, M.5
Baldwin, E.P.6
-
50
-
-
0028086531
-
Specificity and promiscuity in membrane helix interactions
-
M.A. Lemmon, and D.M. Engelman Specificity and promiscuity in membrane helix interactions Q Rev Biophys 27 1994 157 218
-
(1994)
Q Rev Biophys
, vol.27
, pp. 157-218
-
-
Lemmon, M.A.1
Engelman, D.M.2
-
51
-
-
0034711953
-
The GxxxG motif: A framework for transmembrane helix-helix association
-
W.P. Russ, and D.M. Engelman The GxxxG motif: A framework for transmembrane helix-helix association J Mol Biol 296 2000 911 919
-
(2000)
J Mol Biol
, vol.296
, pp. 911-919
-
-
Russ, W.P.1
Engelman, D.M.2
-
52
-
-
0034711958
-
Statistical analysis of amino acid patterns in transmembrane helices: The GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions
-
A. Senes, M. Gerstein, and D.M. Engelman Statistical analysis of amino acid patterns in transmembrane helices: The GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions J Mol Biol 296 2000 921 936
-
(2000)
J Mol Biol
, vol.296
, pp. 921-936
-
-
Senes, A.1
Gerstein, M.2
Engelman, D.M.3
-
53
-
-
6344236852
-
Complex interactions at the helix-helix interface stabilize the glycophorin A transmembrane dimer
-
A.K. Doura, and K.G. Fleming Complex interactions at the helix-helix interface stabilize the glycophorin A transmembrane dimer J Mol Biol 343 2004 1487 1497
-
(2004)
J Mol Biol
, vol.343
, pp. 1487-1497
-
-
Doura, A.K.1
Fleming, K.G.2
-
54
-
-
79960590320
-
Dramatic destabilization of transmembrane helix interactions by features of natural membrane environments
-
H. Hong, and J.U. Bowie Dramatic destabilization of transmembrane helix interactions by features of natural membrane environments J Am Chem Soc 133 2011 11389 11398
-
(2011)
J Am Chem Soc
, vol.133
, pp. 11389-11398
-
-
Hong, H.1
Bowie, J.U.2
-
55
-
-
77949371562
-
Measuring the energetics of membrane protein dimerization in mammalian membranes
-
L. Chen, L. Novicky, M. Merzlyakov, T. Hristov, and K. Hristova Measuring the energetics of membrane protein dimerization in mammalian membranes J Am Chem Soc 132 2010 3628 3635
-
(2010)
J Am Chem Soc
, vol.132
, pp. 3628-3635
-
-
Chen, L.1
Novicky, L.2
Merzlyakov, M.3
Hristov, T.4
Hristova, K.5
-
57
-
-
78650553544
-
Method to measure strong protein-protein interactions in lipid bilayers using a steric trap
-
H. Hong, T. Blois, Z. Cao, and J.U. Bowie Method to measure strong protein-protein interactions in lipid bilayers using a steric trap Proc Natl Acad Sci U S A 107 2010 19802 19807
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 19802-19807
-
-
Hong, H.1
Blois, T.2
Cao, Z.3
Bowie, J.U.4
-
58
-
-
84891917719
-
Measuring membrane protein stability under native conditions
-
Y.-C. Chang, and J.U. Bowie Measuring membrane protein stability under native conditions Proc Natl Acad Sci U S A 111 2014 219 224
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 219-224
-
-
Chang, Y.-C.1
Bowie, J.U.2
-
59
-
-
0038409063
-
The sensor protein KdpD inserts into the Escherichia coli membrane independent of the Sec translocase and YidC
-
S.J. Facey, and A. Kuhn The sensor protein KdpD inserts into the Escherichia coli membrane independent of the Sec translocase and YidC Eur J Biochem 270 2003 1724 1734
-
(2003)
Eur J Biochem
, vol.270
, pp. 1724-1734
-
-
Facey, S.J.1
Kuhn, A.2
-
60
-
-
0034636956
-
Structural biology. The ribosome is a ribozyme
-
T.R. Cech Structural biology. The ribosome is a ribozyme Science 289 2000 878 879
-
(2000)
Science
, vol.289
, pp. 878-879
-
-
Cech, T.R.1
-
61
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
-
N. Ban, P. Nissen, J. Hansen, P.B. Moore, and T.A. Steitz The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution Science 289 2000 905 920
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
62
-
-
83855162728
-
The structure of the eukaryotic ribosome at 3.0 Å resolution
-
A. Ben-Shem, N. Garreau de Loubresse, S. Melnikov, L. Jenner, G. Yusupova, and M. Yusupov The structure of the eukaryotic ribosome at 3.0 Å resolution Science 334 2011 1524 1529
-
(2011)
Science
, vol.334
, pp. 1524-1529
-
-
Ben-Shem, A.1
Garreau De Loubresse, N.2
Melnikov, S.3
Jenner, L.4
Yusupova, G.5
Yusupov, M.6
-
63
-
-
78650546283
-
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution
-
J.P. Armache, A. Jarasch, A.M. Anger, E. Villa, T. Becker, and S. Bhushan Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution Proc Natl Acad Sci U S A 107 2010 19748 19753
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 19748-19753
-
-
Armache, J.P.1
Jarasch, A.2
Anger, A.M.3
Villa, E.4
Becker, T.5
Bhushan, S.6
-
64
-
-
84903310310
-
Structure of the mammalian ribosome-Sec61 complex to 3.4 Å resolution
-
R.M. Voorhees, I.S. Fernández, S.H.W. Scheres, and R.S. Hegde Structure of the mammalian ribosome-Sec61 complex to 3.4 Å resolution Cell 157 2014 1632 1643
-
(2014)
Cell
, vol.157
, pp. 1632-1643
-
-
Voorhees, R.M.1
Fernández, I.S.2
Scheres, S.H.W.3
Hegde, R.S.4
-
66
-
-
84878941023
-
Signal recognition particle: An essential protein-targeting machine
-
D. Akopian, K. Shen, X. Zhang, and S.O. Shan Signal recognition particle: An essential protein-targeting machine Annu Rev Biochem 82 2013 693 721
-
(2013)
Annu Rev Biochem
, vol.82
, pp. 693-721
-
-
Akopian, D.1
Shen, K.2
Zhang, X.3
Shan, S.O.4
-
67
-
-
0038719738
-
Signal recognition particle binds to ribosome-bound signal sequences with fluorescence-detected subnanomolar affinity that does not diminish as the nascent chain lengthens
-
J.J. Flanagan, J.C. Chen, Y. Miao, Y. Shao, J. Lin, and P.E. Bock Signal recognition particle binds to ribosome-bound signal sequences with fluorescence-detected subnanomolar affinity that does not diminish as the nascent chain lengthens J Biol Chem 278 2003 18628 18637
-
(2003)
J Biol Chem
, vol.278
, pp. 18628-18637
-
-
Flanagan, J.J.1
Chen, J.C.2
Miao, Y.3
Shao, Y.4
Lin, J.5
Bock, P.E.6
-
68
-
-
79951826865
-
The crystal structure of the signal recognition particle in complex with its receptor
-
S.F. Ataide, N. Schmitz, K. Shen, A. Ke, S.O. Shan, and J.A. Doudna The crystal structure of the signal recognition particle in complex with its receptor Science 331 2011 881 886
-
(2011)
Science
, vol.331
, pp. 881-886
-
-
Ataide, S.F.1
Schmitz, N.2
Shen, K.3
Ke, A.4
Shan, S.O.5
Doudna, J.A.6
-
69
-
-
80054725630
-
A tale of two GTPases in cotranslational protein targeting
-
I. Saraogi, D. Akopian, and S.O. Shan A tale of two GTPases in cotranslational protein targeting Protein Sci 20 2011 1790 1795
-
(2011)
Protein Sci
, vol.20
, pp. 1790-1795
-
-
Saraogi, I.1
Akopian, D.2
Shan, S.O.3
-
70
-
-
77953025666
-
Recognition of a signal peptide by the signal recognition particle
-
C.Y. Janda, J. Li, C. Oubridge, H. Hernandez, C.V. Robinson, and K. Nagai Recognition of a signal peptide by the signal recognition particle Nature 465 2010 507 510
-
(2010)
Nature
, vol.465
, pp. 507-510
-
-
Janda, C.Y.1
Li, J.2
Oubridge, C.3
Hernandez, H.4
Robinson, C.V.5
Nagai, K.6
-
71
-
-
77249145819
-
Divergent stalling sequences sense and control cellular physiology
-
K. Ito, S. Chiba, and K. Pogliano Divergent stalling sequences sense and control cellular physiology Biochem Biophys Res Commun 393 2010 1 5
-
(2010)
Biochem Biophys Res Commun
, vol.393
, pp. 1-5
-
-
Ito, K.1
Chiba, S.2
Pogliano, K.3
-
75
-
-
84899424468
-
The Sec translocon mediated protein transport in prokaryotes and eukaryotes
-
K. Denks, A. Vogt, I. Sachelaru, N.A. Petriman, R. Kudva, and H.G. Koch The Sec translocon mediated protein transport in prokaryotes and eukaryotes Mol Membr Biol 31 2014 58 84
-
(2014)
Mol Membr Biol
, vol.31
, pp. 58-84
-
-
Denks, K.1
Vogt, A.2
Sachelaru, I.3
Petriman, N.A.4
Kudva, R.5
Koch, H.G.6
-
76
-
-
84892797558
-
Architecture of the large subunit of the mammalian mitochondrial ribosome
-
B.J. Greber, D. Boehringer, A. Leitner, P. Bieri, F. Voigts-Hoffmann, and J.P. Erzberger Architecture of the large subunit of the mammalian mitochondrial ribosome Nature 505 2014 515
-
(2014)
Nature
, vol.505
, pp. 515
-
-
Greber, B.J.1
Boehringer, D.2
Leitner, A.3
Bieri, P.4
Voigts-Hoffmann, F.5
Erzberger, J.P.6
-
77
-
-
36749001066
-
Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes
-
T.A. Rapoport Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes Nature 450 2007 663 669
-
(2007)
Nature
, vol.450
, pp. 663-669
-
-
Rapoport, T.A.1
-
78
-
-
0347192985
-
X-ray structure of a protein-conducting channel
-
B. van den Berg, W.M. Clemons, I. Collinson, Y. Modis, E. Hartmann, and S.C. Harrison X-ray structure of a protein-conducting channel Nature 427 2004 36 44
-
(2004)
Nature
, vol.427
, pp. 36-44
-
-
Van Den Berg, B.1
Clemons, W.M.2
Collinson, I.3
Modis, Y.4
Hartmann, E.5
Harrison, S.C.6
-
79
-
-
54049151196
-
Conformational transition of Sec machinery inferred from bacterial SecYE structures
-
T. Tsukazaki, H. Mori, S. Fukai, R. Ishitani, T. Mori, and N. Dohmae Conformational transition of Sec machinery inferred from bacterial SecYE structures Nature 455 2008 988 991
-
(2008)
Nature
, vol.455
, pp. 988-991
-
-
Tsukazaki, T.1
Mori, H.2
Fukai, S.3
Ishitani, R.4
Mori, T.5
Dohmae, N.6
-
80
-
-
78049253482
-
Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes
-
P.F. Egea, and R.M. Stroud Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes Proc Natl Acad Sci U S A 107 2010 17182 17187
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 17182-17187
-
-
Egea, P.F.1
Stroud, R.M.2
-
81
-
-
0029017127
-
FtsH is required for proteolytic elimination of uncomplexed forms of SecY, an essential protein translocase subunit
-
A. Kihara, Y. Akiyama, and K. Ito FtsH is required for proteolytic elimination of uncomplexed forms of SecY, an essential protein translocase subunit Proc Natl Acad Sci U S A 92 1995 4532 4536
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 4532-4536
-
-
Kihara, A.1
Akiyama, Y.2
Ito, K.3
-
82
-
-
31344480940
-
Topologically fixed SecG is fully functional
-
E.O. van der Sluis, E. van der Vries, G. Berrelkamp, N. Nouwen, and A.J. Driessen Topologically fixed SecG is fully functional J Bacteriol 188 2006 1188 1190
-
(2006)
J Bacteriol
, vol.188
, pp. 1188-1190
-
-
Van Der Sluis, E.O.1
Van Der Vries, E.2
Berrelkamp, G.3
Nouwen, N.4
Driessen, A.J.5
-
83
-
-
37249037182
-
Molecular code for transmembrane-helix recognition by the Sec61 translocon
-
T. Hessa, N.M. Meindl-Beinker, A. Bernsel, H. Kim, Y. Sato, and M. Lerch-Bader Molecular code for transmembrane-helix recognition by the Sec61 translocon Nature 450 2007 1026 1030
-
(2007)
Nature
, vol.450
, pp. 1026-1030
-
-
Hessa, T.1
Meindl-Beinker, N.M.2
Bernsel, A.3
Kim, H.4
Sato, Y.5
Lerch-Bader, M.6
-
84
-
-
13444262028
-
Recognition of transmembrane helices by the endoplasmic reticulum translocon
-
T. Hessa, H. Kim, K. Bihlmaier, C. Lundin, J. Boekel, and H. Andersson Recognition of transmembrane helices by the endoplasmic reticulum translocon Nature 433 2005 377 381
-
(2005)
Nature
, vol.433
, pp. 377-381
-
-
Hessa, T.1
Kim, H.2
Bihlmaier, K.3
Lundin, C.4
Boekel, J.5
Andersson, H.6
-
85
-
-
84879969808
-
Quantitative analysis of SecYEG-mediated insertion of transmembrane alpha-helices into the bacterial inner membrane
-
K. Öjemalm, S.C. Botelho, C. Studle, and G. von Heijne Quantitative analysis of SecYEG-mediated insertion of transmembrane alpha-helices into the bacterial inner membrane J Mol Biol 425 2013 2813 2822
-
(2013)
J Mol Biol
, vol.425
, pp. 2813-2822
-
-
Öjemalm, K.1
Botelho, S.C.2
Studle, C.3
Von Heijne, G.4
-
86
-
-
79961238544
-
Apolar surface area determines the efficiency of translocon-mediated membrane-protein integration into the endoplasmic reticulum
-
K. Öjemalm, T. Higuchi, Y. Jiang, U. Langel, I. Nilsson, and S.H. White Apolar surface area determines the efficiency of translocon-mediated membrane-protein integration into the endoplasmic reticulum Proc Natl Acad Sci U S A 108 2011 E359 E364
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. E359-E364
-
-
Öjemalm, K.1
Higuchi, T.2
Jiang, Y.3
Langel, U.4
Nilsson, I.5
White, S.H.6
-
87
-
-
79955654072
-
Arginine in membranes: The connection between molecular dynamics simulations and translocon-mediated insertion experiments
-
E.V. Schow, J.A. Freites, P. Cheng, A. Bernsel, G. von Heijne, and S.H. White Arginine in membranes: The connection between molecular dynamics simulations and translocon-mediated insertion experiments J Membr Biol 239 2011 35 48
-
(2011)
J Membr Biol
, vol.239
, pp. 35-48
-
-
Schow, E.V.1
Freites, J.A.2
Cheng, P.3
Bernsel, A.4
Von Heijne, G.5
White, S.H.6
-
88
-
-
84955562310
-
Spontaneous transmembrane helix insertion thermodynamically mimics translocon-guided insertion
-
M.B. Ulmschneider, J.P. Ulmschneider, N. Schiller, B.A. Wallace, G. von Heijne, and S.H. White Spontaneous transmembrane helix insertion thermodynamically mimics translocon-guided insertion Nat Commun 5 2014 4863
-
(2014)
Nat Commun
, vol.5
, pp. 4863
-
-
Ulmschneider, M.B.1
Ulmschneider, J.P.2
Schiller, N.3
Wallace, B.A.4
Von Heijne, G.5
White, S.H.6
-
89
-
-
84893630228
-
Cryo-EM structures of the Sec61-complex engaged in nascent peptide translocation or membrane insertion
-
M. Gogala, T. Becker, B. Beatrix, J.-P. Armache1, C. Barrio-Garcia, and O. Berninghausen Cryo-EM structures of the Sec61-complex engaged in nascent peptide translocation or membrane insertion Nature 506 2014 107 110
-
(2014)
Nature
, vol.506
, pp. 107-110
-
-
Gogala, M.1
Becker, T.2
Beatrix, B.3
Armache, J.-P.4
Barrio-Garcia, C.5
Berninghausen, O.6
-
90
-
-
84893726448
-
Structure of the SecY channel during initiation of protein translocation
-
E. Park, J.F. Menetret, J.C. Gumbart, S.J. Ludtke, W. Li, and A. Whynot Structure of the SecY channel during initiation of protein translocation Nature 506 2013 102 106
-
(2013)
Nature
, vol.506
, pp. 102-106
-
-
Park, E.1
Menetret, J.F.2
Gumbart, J.C.3
Ludtke, S.J.4
Li, W.5
Whynot, A.6
-
91
-
-
84868136627
-
Long-timescale dynamics and regulation of Sec-facilitated protein translocation
-
B. Zhang, and T.F. Miller Long-timescale dynamics and regulation of Sec-facilitated protein translocation Cell Rep 2 2012 927 937
-
(2012)
Cell Rep
, vol.2
, pp. 927-937
-
-
Zhang, B.1
Miller, T.F.2
-
92
-
-
84898761276
-
An allosteric Sec61 inhibitor traps nascent transmembrane helices at the lateral gate
-
A.L. Mackinnon, V.O. Paavilainen, A. Sharma, R.S. Hegde, and J. Taunton An allosteric Sec61 inhibitor traps nascent transmembrane helices at the lateral gate eLife 3 2014 e01483
-
(2014)
ELife
, vol.3
, pp. e01483
-
-
MacKinnon, A.L.1
Paavilainen, V.O.2
Sharma, A.3
Hegde, R.S.4
Taunton, J.5
-
93
-
-
77249173166
-
Repositioning of transmembrane alpha-helices during membrane protein folding
-
A. Kauko, L.E. Hedin, E. Thebaud, S. Cristobal, A. Elofsson, and G. von Heijne Repositioning of transmembrane alpha-helices during membrane protein folding J Mol Biol 397 2010 190 201
-
(2010)
J Mol Biol
, vol.397
, pp. 190-201
-
-
Kauko, A.1
Hedin, L.E.2
Thebaud, E.3
Cristobal, S.4
Elofsson, A.5
Von Heijne, G.6
-
94
-
-
74649086575
-
Membrane insertion of marginally hydrophobic transmembrane helices depends on sequence context
-
L.E. Hedin, K. Öjemalm, A. Bernsel, A. Hennerdal, K. Illergard, and K. Enquist Membrane insertion of marginally hydrophobic transmembrane helices depends on sequence context J Mol Biol 396 2010 221 229
-
(2010)
J Mol Biol
, vol.396
, pp. 221-229
-
-
Hedin, L.E.1
Öjemalm, K.2
Bernsel, A.3
Hennerdal, A.4
Illergard, K.5
Enquist, K.6
-
95
-
-
84857439394
-
Orientational preferences of neighboring helices can drive ER insertion of a marginally hydrophobic transmembrane helix
-
K. Öjemalm, K.K. Halling, I. Nilsson, and G. von Heijne Orientational preferences of neighboring helices can drive ER insertion of a marginally hydrophobic transmembrane helix Mol Cell 45 2012 529 540
-
(2012)
Mol Cell
, vol.45
, pp. 529-540
-
-
Öjemalm, K.1
Halling, K.K.2
Nilsson, I.3
Von Heijne, G.4
-
96
-
-
84901259411
-
Structural basis of Sec-independent membrane protein insertion by YidC
-
K. Kumazaki, S. Chiba, M. Takemoto, A. Furukawa, K. Nishiyama, and Y. Sugano Structural basis of Sec-independent membrane protein insertion by YidC Nature 509 2014 516 520
-
(2014)
Nature
, vol.509
, pp. 516-520
-
-
Kumazaki, K.1
Chiba, S.2
Takemoto, M.3
Furukawa, A.4
Nishiyama, K.5
Sugano, Y.6
-
97
-
-
85003044155
-
A structural model of the active ribosome-bound membrane protein insertase YidC
-
S. Wickles, A. Singharoy, J. Andreani, S. Seemayer, L. Bischoff, and O. Berninghausen A structural model of the active ribosome-bound membrane protein insertase YidC eLife 2014 http://dx.doi.org/10.7554/eLife.03035
-
(2014)
ELife
-
-
Wickles, S.1
Singharoy, A.2
Andreani, J.3
Seemayer, S.4
Bischoff, L.5
Berninghausen, O.6
-
98
-
-
37349111755
-
Projection structure of YidC: A conserved mediator of membrane protein assembly
-
M. Lotz, W. Haase, W. Kuhlbrandt, and I. Collinson Projection structure of YidC: A conserved mediator of membrane protein assembly J Mol Biol 375 2008 901 907
-
(2008)
J Mol Biol
, vol.375
, pp. 901-907
-
-
Lotz, M.1
Haase, W.2
Kuhlbrandt, W.3
Collinson, I.4
-
99
-
-
65549152827
-
YidC and Oxa1 form dimeric insertion pores on the translating ribosome
-
R. Kohler, D. Boehringer, B. Greber, R. Bingel-Erlenmeyer, I. Collinson, and C. Schaffitzel YidC and Oxa1 form dimeric insertion pores on the translating ribosome Mol Cell 34 2009 344 353
-
(2009)
Mol Cell
, vol.34
, pp. 344-353
-
-
Kohler, R.1
Boehringer, D.2
Greber, B.3
Bingel-Erlenmeyer, R.4
Collinson, I.5
Schaffitzel, C.6
-
100
-
-
84886728407
-
Elucidating the native architecture of the YidC:ribosome complex
-
A. Kedrov, M. Sustarsic, J. de Keyzer, J.J. Caumanns, Z.C. Wu, and A.J. Driessen Elucidating the native architecture of the YidC:ribosome complex J Mol Biol 425 2013 4112 4124
-
(2013)
J Mol Biol
, vol.425
, pp. 4112-4124
-
-
Kedrov, A.1
Sustarsic, M.2
De Keyzer, J.3
Caumanns, J.J.4
Wu, Z.C.5
Driessen, A.J.6
-
101
-
-
84891946539
-
The C-terminal regions of YidC from Rhodopirellula baltica and Oceanicaulis alexandrii bind to ribosomes and partially substitute for SRP receptor function in Escherichia coli
-
I. Seitl, S. Wickles, R. Beckmann, A. Kuhn, and D. Kiefer The C-terminal regions of YidC from Rhodopirellula baltica and Oceanicaulis alexandrii bind to ribosomes and partially substitute for SRP receptor function in Escherichia coli Mol Microbiol 91 2014 408 421
-
(2014)
Mol Microbiol
, vol.91
, pp. 408-421
-
-
Seitl, I.1
Wickles, S.2
Beckmann, R.3
Kuhn, A.4
Kiefer, D.5
-
102
-
-
37349063087
-
Features of transmembrane segments that promote the lateral release from the translocase into the lipid phase
-
K. Xie, T. Hessa, S. Seppälä, M. Rapp, G. von Heijne, and R.E. Dalbey Features of transmembrane segments that promote the lateral release from the translocase into the lipid phase Biochemistry 46 2007 15153 15161
-
(2007)
Biochemistry
, vol.46
, pp. 15153-15161
-
-
Xie, K.1
Hessa, T.2
Seppälä, S.3
Rapp, M.4
Von Heijne, G.5
Dalbey, R.E.6
-
103
-
-
0029002962
-
The protein-conducting channel in the membrane of the endoplasmic reticulum is open laterally toward the lipid bilayer
-
B. Martoglio, M.W. Hofmann, J. Brunner, and B. Dobberstein The protein-conducting channel in the membrane of the endoplasmic reticulum is open laterally toward the lipid bilayer Cell 81 1995 207 214
-
(1995)
Cell
, vol.81
, pp. 207-214
-
-
Martoglio, B.1
Hofmann, M.W.2
Brunner, J.3
Dobberstein, B.4
-
104
-
-
0242407458
-
Translocon "pulling" of nascent SecM controls the duration of its translational pause and secretion-responsive secA regulation
-
M.E. Butkus, L.B. Prundeanu, and D.B. Oliver Translocon "pulling" of nascent SecM controls the duration of its translational pause and secretion-responsive secA regulation J Bacteriol 185 2003 6719 6722
-
(2003)
J Bacteriol
, vol.185
, pp. 6719-6722
-
-
Butkus, M.E.1
Prundeanu, L.B.2
Oliver, D.B.3
-
105
-
-
64749115067
-
The plasticity of a translation arrest motif yields insights into nascent polypeptide recognition inside the ribosome tunnel
-
M.N. Yap, and H.D. Bernstein The plasticity of a translation arrest motif yields insights into nascent polypeptide recognition inside the ribosome tunnel Mol Cell 34 2009 201 211
-
(2009)
Mol Cell
, vol.34
, pp. 201-211
-
-
Yap, M.N.1
Bernstein, H.D.2
-
106
-
-
84867218476
-
A biphasic pulling force acts on transmembrane helices during translocon-mediated membrane integration
-
N. Ismail, R. Hedman, N. Schiller, and G. von Heijne A biphasic pulling force acts on transmembrane helices during translocon-mediated membrane integration Nat Struct Mol Biol 19 2012 1018 1022
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 1018-1022
-
-
Ismail, N.1
Hedman, R.2
Schiller, N.3
Von Heijne, G.4
-
107
-
-
0000651660
-
The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology
-
G. von Heijne The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology EMBO J 5 1986 3021 3027
-
(1986)
EMBO J
, vol.5
, pp. 3021-3027
-
-
Von Heijne, G.1
-
108
-
-
0028175016
-
Topological "frustration" in multi-spanning E. coli inner membrane proteins
-
G. Gafvelin, and G. von Heijne Topological "frustration" in multi-spanning E. coli inner membrane proteins Cell 77 1994 401 412
-
(1994)
Cell
, vol.77
, pp. 401-412
-
-
Gafvelin, G.1
Von Heijne, G.2
-
109
-
-
77954070546
-
Control of membrane protein topology by a single C-terminal residue
-
S. Seppälä, J.S. Slusky, P. Lloris-Garcera, M. Rapp, and G. von Heijne Control of membrane protein topology by a single C-terminal residue Science 328 2010 1698 1700
-
(2010)
Science
, vol.328
, pp. 1698-1700
-
-
Seppälä, S.1
Slusky, J.S.2
Lloris-Garcera, P.3
Rapp, M.4
Von Heijne, G.5
-
110
-
-
77953517920
-
Positive charges of translocating polypeptide chain retrieve an upstream marginal hydrophobic segment from the endoplasmic reticulum lumen to the translocon
-
H. Fujita, Y. Kida, M. Hagiwara, F. Morimoto, and M. Sakaguchi Positive charges of translocating polypeptide chain retrieve an upstream marginal hydrophobic segment from the endoplasmic reticulum lumen to the translocon Mol Biol Cell 21 2010 2045 2056
-
(2010)
Mol Biol Cell
, vol.21
, pp. 2045-2056
-
-
Fujita, H.1
Kida, Y.2
Hagiwara, M.3
Morimoto, F.4
Sakaguchi, M.5
-
111
-
-
84888125317
-
Functional asymmetry within the Sec61p translocon
-
E. Demirci, T. Junne, S. Baday, S. Berneche, and M. Spiess Functional asymmetry within the Sec61p translocon Proc Natl Acad Sci U S A 110 2013 18856 18861
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 18856-18861
-
-
Demirci, E.1
Junne, T.2
Baday, S.3
Berneche, S.4
Spiess, M.5
-
112
-
-
77952378779
-
The hydrophobic core of the Sec61 translocon defines the hydrophobicity threshold for membrane integration
-
T. Junne, L. Kocik, and M. Spiess The hydrophobic core of the Sec61 translocon defines the hydrophobicity threshold for membrane integration Mol Biol Cell 21 2010 1662 1670
-
(2010)
Mol Biol Cell
, vol.21
, pp. 1662-1670
-
-
Junne, T.1
Kocik, L.2
Spiess, M.3
-
113
-
-
61949084073
-
Sequence-specific retention and regulated integration of a nascent membrane protein by the endoplasmic reticulum Sec61 translocon
-
D. Pitonzo, Z. Yang, Y. Matsumura, A.E. Johnson, and W.R. Skach Sequence-specific retention and regulated integration of a nascent membrane protein by the endoplasmic reticulum Sec61 translocon Mol Biol Cell 20 2009 685 698
-
(2009)
Mol Biol Cell
, vol.20
, pp. 685-698
-
-
Pitonzo, D.1
Yang, Z.2
Matsumura, Y.3
Johnson, A.E.4
Skach, W.R.5
-
114
-
-
27144549973
-
Sequential triage of transmembrane segments by Sec61a during biogenesis of a native multispanning membrane protein
-
H. Sadlish, D. Pitonzo, A.E. Johnson, and W.R. Skach Sequential triage of transmembrane segments by Sec61a during biogenesis of a native multispanning membrane protein Nat Struct Mol Biol 12 2005 870 878
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 870-878
-
-
Sadlish, H.1
Pitonzo, D.2
Johnson, A.E.3
Skach, W.R.4
-
115
-
-
20444430500
-
Secondary structure formation of a transmembrane segment in Kv channels
-
J. Lu, and C. Deutsch Secondary structure formation of a transmembrane segment in Kv channels Biochemistry 44 2005 8230 8243
-
(2005)
Biochemistry
, vol.44
, pp. 8230-8243
-
-
Lu, J.1
Deutsch, C.2
-
116
-
-
28544449949
-
Folding zones inside the ribosomal exit tunnel
-
J. Lu, and C. Deutsch Folding zones inside the ribosomal exit tunnel Nat Struct Mol Biol 12 2005 1123 1129
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 1123-1129
-
-
Lu, J.1
Deutsch, C.2
-
117
-
-
33744551950
-
Translation arrest requires two-way communication between a nascent polypeptide and the ribosome
-
C.A. Woolhead, A.E. Johnson, and H.D. Bernstein Translation arrest requires two-way communication between a nascent polypeptide and the ribosome Mol Cell 22 2006 587 598
-
(2006)
Mol Cell
, vol.22
, pp. 587-598
-
-
Woolhead, C.A.1
Johnson, A.E.2
Bernstein, H.D.3
-
118
-
-
51049088654
-
Control of translocation through the Sec61 translocon by nascent polypeptide structure within the ribosome
-
C.J. Daniel, B. Conti, A.E. Johnson, and W.R. Skach Control of translocation through the Sec61 translocon by nascent polypeptide structure within the ribosome J Biol Chem 283 2008 20864 20873
-
(2008)
J Biol Chem
, vol.283
, pp. 20864-20873
-
-
Daniel, C.J.1
Conti, B.2
Johnson, A.E.3
Skach, W.R.4
-
119
-
-
26444611461
-
Transmembrane glycine zippers: Physiological and pathological roles in membrane proteins
-
S. Kim, T.J. Jeon, A. Oberai, D. Yang, J.J. Schmidt, and J.U. Bowie Transmembrane glycine zippers: Physiological and pathological roles in membrane proteins Proc Natl Acad Sci U S A 102 2005 14278 14283
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 14278-14283
-
-
Kim, S.1
Jeon, T.J.2
Oberai, A.3
Yang, D.4
Schmidt, J.J.5
Bowie, J.U.6
-
120
-
-
0030777759
-
The effect of point mutations on the free energy of transmembrane α-helix dimerization
-
K.G. Fleming, A.L. Ackerman, and D.M. Engelman The effect of point mutations on the free energy of transmembrane α-helix dimerization J Mol Biol 272 1997 266 275
-
(1997)
J Mol Biol
, vol.272
, pp. 266-275
-
-
Fleming, K.G.1
Ackerman, A.L.2
Engelman, D.M.3
-
121
-
-
1942469334
-
The affinity of GXXXG motifs in transmembrane helix-helix interactions is modulated by long-range communication
-
R.A. Melnyk, S. Kim, A.R. Curran, D.M. Engelman, J.U. Bowie, and C.M. Deber The affinity of GXXXG motifs in transmembrane helix-helix interactions is modulated by long-range communication J Biol Chem 279 2004 16591 16597
-
(2004)
J Biol Chem
, vol.279
, pp. 16591-16597
-
-
Melnyk, R.A.1
Kim, S.2
Curran, A.R.3
Engelman, D.M.4
Bowie, J.U.5
Deber, C.M.6
-
122
-
-
5144227144
-
Motifs of two small residues can assist but are not sufficient to mediate transmembrane helix interactions
-
D. Schneider, and D.M. Engelman Motifs of two small residues can assist but are not sufficient to mediate transmembrane helix interactions J Mol Biol 343 2004 799 804
-
(2004)
J Mol Biol
, vol.343
, pp. 799-804
-
-
Schneider, D.1
Engelman, D.M.2
-
123
-
-
0037136435
-
Genomic analysis of membrane protein families: Abundance and conserved motifs
-
research
-
Y. Liu, D.M. Engelman, and M. Gerstein Genomic analysis of membrane protein families: Abundance and conserved motifs Genome Biol 3 2002 0054 research
-
(2002)
Genome Biol
, vol.3
, pp. 0054
-
-
Liu, Y.1
Engelman, D.M.2
Gerstein, M.3
-
124
-
-
84855465724
-
Transmembrane helix dimerization: Beyond the search for sequence motifs
-
E. Li, W.C. Wimley, and K. Hristova Transmembrane helix dimerization: Beyond the search for sequence motifs Biochim Biophys Acta 2012 1818 183 193
-
(1818)
Biochim Biophys Acta
, vol.2012
, pp. 183-193
-
-
Li, E.1
Wimley, W.C.2
Hristova, K.3
-
125
-
-
18744378545
-
A putative molecular-activation switch in the transmembrane domain of erbB2
-
S.J. Fleishman, J. Schlessinger, and N. Ben-Tal A putative molecular-activation switch in the transmembrane domain of erbB2 Proc Natl Acad Sci U S A 99 2002 15937 15940
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 15937-15940
-
-
Fleishman, S.J.1
Schlessinger, J.2
Ben-Tal, N.3
-
126
-
-
34249683488
-
Membrane protein structure: Prediction versus reality
-
A. Elofsson, and G. von Heijne Membrane protein structure: Prediction versus reality Annu Rev Biochem 76 2007 125 140
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 125-140
-
-
Elofsson, A.1
Von Heijne, G.2
-
127
-
-
28444488355
-
Solving the membrane protein folding problem
-
J.U. Bowie Solving the membrane protein folding problem Nature 438 2005 581 589
-
(2005)
Nature
, vol.438
, pp. 581-589
-
-
Bowie, J.U.1
-
128
-
-
34247614946
-
Formation of transmembrane helices in vivo - Is hydrophobicity all that matters?
-
G. von Heijne Formation of transmembrane helices in vivo - Is hydrophobicity all that matters? J Gen Physiol 129 2007 353 356
-
(2007)
J Gen Physiol
, vol.129
, pp. 353-356
-
-
Von Heijne, G.1
-
130
-
-
0034644762
-
Charge pair interactions in a model transmembrane helix in the ER membrane
-
C.N. Chin, and G. von Heijne Charge pair interactions in a model transmembrane helix in the ER membrane J Mol Biol 303 2000 1 5
-
(2000)
J Mol Biol
, vol.303
, pp. 1-5
-
-
Chin, C.N.1
Von Heijne, G.2
-
131
-
-
0037150088
-
Electrostatic interactions in an integral membrane protein
-
E.T. Johnson, and W.W. Parson Electrostatic interactions in an integral membrane protein Biochemistry 41 2002 6483 6494
-
(2002)
Biochemistry
, vol.41
, pp. 6483-6494
-
-
Johnson, E.T.1
Parson, W.W.2
-
132
-
-
0035969998
-
Polar side chains drive the association of model transmembrane peptides
-
H. Gratkowski, J.D. Lear, and W.F. DeGrado Polar side chains drive the association of model transmembrane peptides Proc Natl Acad Sci U S A 98 2001 880 885
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 880-885
-
-
Gratkowski, H.1
Lear, J.D.2
Degrado, W.F.3
-
133
-
-
0024346677
-
Hydrophobic organization of membrane proteins
-
D.C. Rees, L. DeAntonio, and D. Eisenberg Hydrophobic organization of membrane proteins Science 245 1989 510 513
-
(1989)
Science
, vol.245
, pp. 510-513
-
-
Rees, D.C.1
Deantonio, L.2
Eisenberg, D.3
-
135
-
-
66249130020
-
A unified hydrophobicity scale for multispan membrane proteins
-
J. Koehler, N. Woetzel, R. Staritzbichler, C.R. Sanders, and J. Meiler A unified hydrophobicity scale for multispan membrane proteins Proteins 76 2009 13 29
-
(2009)
Proteins
, vol.76
, pp. 13-29
-
-
Koehler, J.1
Woetzel, N.2
Staritzbichler, R.3
Sanders, C.R.4
Meiler, J.5
-
136
-
-
84890856922
-
Transmembrane segments form tertiary hairpins in the folding vestibule of the ribosome
-
L. Tu, P. Khanna, and C. Deutsch Transmembrane segments form tertiary hairpins in the folding vestibule of the ribosome J Mol Biol 426 2014 185 198
-
(2014)
J Mol Biol
, vol.426
, pp. 185-198
-
-
Tu, L.1
Khanna, P.2
Deutsch, C.3
-
138
-
-
34347249218
-
Contribution of hydrophobic and electrostatic interactions to the membrane integration of the Shaker K + channel voltage sensor domain
-
L. Zhang, Y. Sato, T. Hessa, G. von Heijne, J.K. Lee, and I. Kodama Contribution of hydrophobic and electrostatic interactions to the membrane integration of the Shaker K + channel voltage sensor domain Proc Natl Acad Sci U S A 104 2007 8263 8268
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 8263-8268
-
-
Zhang, L.1
Sato, Y.2
Hessa, T.3
Von Heijne, G.4
Lee, J.K.5
Kodama, I.6
-
139
-
-
69449085016
-
Dissecting the physiological role of selective transmembrane-segment retention at the ER translocon
-
B.C. Cross, and S. High Dissecting the physiological role of selective transmembrane-segment retention at the ER translocon J Cell Sci 122 2009 1768 1777
-
(2009)
J Cell Sci
, vol.122
, pp. 1768-1777
-
-
Cross, B.C.1
High, S.2
-
140
-
-
78649770531
-
Why are polar residues within the membrane core evolutionary conserved?
-
K. Illergård, A. Kauko, and A. Elofsson Why are polar residues within the membrane core evolutionary conserved? Proteins 79 2011 79 91
-
(2011)
Proteins
, vol.79
, pp. 79-91
-
-
Illergård, K.1
Kauko, A.2
Elofsson, A.3
-
141
-
-
84899927742
-
Why have small multidrug resistance proteins not evolved into fused, internally duplicated structures?
-
P. Lloris-Garcera, S. Seppala, J.S. Slusky, M. Rapp, and G. von Heijne Why have small multidrug resistance proteins not evolved into fused, internally duplicated structures? J Mol Biol 426 2014 2246 2254
-
(2014)
J Mol Biol
, vol.426
, pp. 2246-2254
-
-
Lloris-Garcera, P.1
Seppala, S.2
Slusky, J.S.3
Rapp, M.4
Von Heijne, G.5
-
142
-
-
84902125409
-
Inverted topologies in membrane proteins: A mini-review
-
A.M. Duran, and J. Meiler Inverted topologies in membrane proteins: A mini-review Comput Struct Biotechnol J 8 2013 e201308004
-
(2013)
Comput Struct Biotechnol J
, vol.8
, pp. e201308004
-
-
Duran, A.M.1
Meiler, J.2
-
143
-
-
84883343893
-
Cotranslational folding of membrane proteins probed by arrest-peptide-mediated force measurements
-
F. Cymer, and G. von Heijne Cotranslational folding of membrane proteins probed by arrest-peptide-mediated force measurements Proc Natl Acad Sci U S A 110 2013 14640 14645
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 14640-14645
-
-
Cymer, F.1
Von Heijne, G.2
-
144
-
-
84902345332
-
Visualization of a polytopic membrane protein during SecY-mediated membrane insertion
-
L. Bischoff, S. Wickles, O. Berninghausen, E.O. van der Sluis, and R. Beckmann Visualization of a polytopic membrane protein during SecY-mediated membrane insertion Nat Commun 5 2014 4103
-
(2014)
Nat Commun
, vol.5
, pp. 4103
-
-
Bischoff, L.1
Wickles, S.2
Berninghausen, O.3
Van Der Sluis, E.O.4
Beckmann, R.5
-
145
-
-
0034492193
-
Reorientation of aquaporin-1 topology during maturation in the endoplasmic reticulum
-
Y. Lu, I.R. Turnbull, A. Bragin, K. Carveth, A.S. Verkman, and W.R. Skach Reorientation of aquaporin-1 topology during maturation in the endoplasmic reticulum Mol Biol Cell 11 2000 2973 2985
-
(2000)
Mol Biol Cell
, vol.11
, pp. 2973-2985
-
-
Lu, Y.1
Turnbull, I.R.2
Bragin, A.3
Carveth, K.4
Verkman, A.S.5
Skach, W.R.6
-
146
-
-
84887502615
-
Reorientation of the first signal-anchor sequence during potassium channel biogenesis at the Sec61 complex
-
H.R. Watson, L. Wunderley, T. Andreou, J. Warwicker, and S. High Reorientation of the first signal-anchor sequence during potassium channel biogenesis at the Sec61 complex Biochem J 456 2013 297 309
-
(2013)
Biochem J
, vol.456
, pp. 297-309
-
-
Watson, H.R.1
Wunderley, L.2
Andreou, T.3
Warwicker, J.4
High, S.5
-
147
-
-
0037180396
-
The tenth membrane region of band 3 is initially exposed to the luminal side of the endoplasmic reticulum and then integrated into a partially folded band 3 intermediate
-
T. Kanki, M. Sakaguchi, A. Kitamura, T. Sato, K. Mihara, and N. Hamasaki The tenth membrane region of band 3 is initially exposed to the luminal side of the endoplasmic reticulum and then integrated into a partially folded band 3 intermediate Biochemistry 41 2002 13973 13981
-
(2002)
Biochemistry
, vol.41
, pp. 13973-13981
-
-
Kanki, T.1
Sakaguchi, M.2
Kitamura, A.3
Sato, T.4
Mihara, K.5
Hamasaki, N.6
-
148
-
-
84901817717
-
Large tilts in transmembrane helices can be induced during tertiary structure formation
-
M. Virkki, C. Boekel, K. Illergard, C. Peters, N. Shu, and K.D. Tsirigos Large tilts in transmembrane helices can be induced during tertiary structure formation J Mol Biol 426 2014 2529 2538
-
(2014)
J Mol Biol
, vol.426
, pp. 2529-2538
-
-
Virkki, M.1
Boekel, C.2
Illergard, K.3
Peters, C.4
Shu, N.5
Tsirigos, K.D.6
-
149
-
-
84881536447
-
Quality control of integral membrane proteins by assembly-dependent membrane integration
-
M.J. Feige, and L.M. Hendershot Quality control of integral membrane proteins by assembly-dependent membrane integration Mol Cell 51 2013 297 309
-
(2013)
Mol Cell
, vol.51
, pp. 297-309
-
-
Feige, M.J.1
Hendershot, L.M.2
-
151
-
-
84904246667
-
Mitochondrial protein translocases for survival and wellbeing
-
A.M. Sokol, M.E. Sztolsztener, M. Wasilewski, E. Heinz, and A. Chacinska Mitochondrial protein translocases for survival and wellbeing FEBS Lett 588 2014 2484 2495
-
(2014)
FEBS Lett
, vol.588
, pp. 2484-2495
-
-
Sokol, A.M.1
Sztolsztener, M.E.2
Wasilewski, M.3
Heinz, E.4
Chacinska, A.5
-
152
-
-
60349119636
-
Protein transport in organelles: The composition, function and regulation of the Tic complex in chloroplast protein import
-
J.P. Benz, J. Soll, and B. Bolter Protein transport in organelles: The composition, function and regulation of the Tic complex in chloroplast protein import FEBS J 276 2009 1166 1176
-
(2009)
FEBS J
, vol.276
, pp. 1166-1176
-
-
Benz, J.P.1
Soll, J.2
Bolter, B.3
-
153
-
-
0034193232
-
Role of lipids in the translocation of proteins across membranes
-
F. van Voorst, and B. de Kruijff Role of lipids in the translocation of proteins across membranes Biochem J 347 2000 601 612
-
(2000)
Biochem J
, vol.347
, pp. 601-612
-
-
Van Voorst, F.1
De Kruijff, B.2
-
154
-
-
34547650465
-
A novel tripartite motif involved in aquaporin topogenesis, monomer folding and tetramerization
-
T.M. Buck, J. Wagner, S. Grund, and W.R. Skach A novel tripartite motif involved in aquaporin topogenesis, monomer folding and tetramerization Nat Struct Mol Biol 14 2007 762 769
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 762-769
-
-
Buck, T.M.1
Wagner, J.2
Grund, S.3
Skach, W.R.4
-
155
-
-
67650732710
-
Lipid-dependent membrane protein topogenesis
-
W. Dowhan, and M. Bogdanov Lipid-dependent membrane protein topogenesis Annu Rev Biochem 78 2009 515 540
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 515-540
-
-
Dowhan, W.1
Bogdanov, M.2
-
156
-
-
0034697967
-
The Sec61p complex mediates the integration of a membrane protein by allowing lipid partitioning of the transmembrane domain
-
S. Heinrich, W. Mothes, J. Brunner, and T. Rapoport The Sec61p complex mediates the integration of a membrane protein by allowing lipid partitioning of the transmembrane domain Cell 102 2000 233 244
-
(2000)
Cell
, vol.102
, pp. 233-244
-
-
Heinrich, S.1
Mothes, W.2
Brunner, J.3
Rapoport, T.4
-
157
-
-
0028856709
-
Membrane topology analysis of the sensor kinase KdpD of Escherichia coli
-
P. Zimmann, W. Puppe, and K. Altendorf Membrane topology analysis of the sensor kinase KdpD of Escherichia coli J Biol Chem 270 1995 28282 28288
-
(1995)
J Biol Chem
, vol.270
, pp. 28282-28288
-
-
Zimmann, P.1
Puppe, W.2
Altendorf, K.3
-
158
-
-
44249116231
-
An amphiphilic region in the cystoplasmic domain of KdpD is recognized by the signal recognition particle and targeted to the Escherichia coli membrane
-
K.S. Maier, S. Hubich, H. Liebhart, S. Krauss, A. Kuhn, and S.J. Facey An amphiphilic region in the cystoplasmic domain of KdpD is recognized by the signal recognition particle and targeted to the Escherichia coli membrane Mol Microbiol 2008 1471 1484
-
(2008)
Mol Microbiol
, pp. 1471-1484
-
-
Maier, K.S.1
Hubich, S.2
Liebhart, H.3
Krauss, S.4
Kuhn, A.5
Facey, S.J.6
-
159
-
-
36148937889
-
Escherichia coli signal recognition particle receptor FtsY contains an essential and autonomous membrane-binding amphipathic helix
-
R. Parlitz, A. Eitan, G. Stjepanovic, I. Bahar, G. Bange, and E. Bibi Escherichia coli signal recognition particle receptor FtsY contains an essential and autonomous membrane-binding amphipathic helix J Biol Chem 282 2007 32176 32184
-
(2007)
J Biol Chem
, vol.282
, pp. 32176-32184
-
-
Parlitz, R.1
Eitan, A.2
Stjepanovic, G.3
Bahar, I.4
Bange, G.5
Bibi, E.6
-
160
-
-
0027170648
-
Membrane partitioning: Distinguishing bilayer effects from the hydrophobic effect
-
W.C. Wimley, and S.H. White Membrane partitioning: distinguishing bilayer effects from the hydrophobic effect Biochemistry 32 1993 6307 6312
-
(1993)
Biochemistry
, vol.32
, pp. 6307-6312
-
-
Wimley, W.C.1
White, S.H.2
-
161
-
-
0033609904
-
Structure of bacteriorodopsin at 1.55 Å resolution
-
H. Luecke, B. Schobert, H.-T. Richter, J.-P. Cartaillr, and J. Lanyi Structure of bacteriorodopsin at 1.55 Å resolution J Mol Biol 291 1999 899 911
-
(1999)
J Mol Biol
, vol.291
, pp. 899-911
-
-
Luecke, H.1
Schobert, B.2
Richter, H.-T.3
Cartaillr, J.-P.4
Lanyi, J.5
-
163
-
-
0031740601
-
Hydrophobic interactions of peptides with membrane interfaces
-
S.H. White, and W.C. Wimley Hydrophobic interactions of peptides with membrane interfaces Biochim Biophys Acta 1376 1998 339 352
-
(1998)
Biochim Biophys Acta
, vol.1376
, pp. 339-352
-
-
White, S.H.1
Wimley, W.C.2
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