-
1
-
-
53849108791
-
Capsular glucan and intracellular glycogen of Mycobacterium tuberculosis: Biosynthesis and impact on the persistence in mice
-
Sambou, T. et al. Capsular glucan and intracellular glycogen of Mycobacterium tuberculosis: biosynthesis and impact on the persistence in mice. Mol Microbiol 70, 762-774, doi:10.1111/j.1365-2958.2008.06445.x (2008).
-
(2008)
Mol Microbiol
, vol.70
, pp. 762-774
-
-
Sambou, T.1
-
2
-
-
79958171834
-
Unexpected and widespread connections between bacterial glycogen and trehalose metabolism
-
Chandra, G., Chater, K. F. & Bornemann, S. Unexpected and widespread connections between bacterial glycogen and trehalose metabolism. Microbiology 157, 1565-1572, doi:10.1099/mic.0.044263-0 (2011).
-
(2011)
Microbiology
, vol.157
, pp. 1565-1572
-
-
Chandra, G.1
Chater, K.F.2
Bornemann, S.3
-
3
-
-
77951296166
-
Self-poisoning of Mycobacterium tuberculosis by targeting GlgE in an alpha-glucan pathway
-
Kalscheuer, R. et al. Self-poisoning of Mycobacterium tuberculosis by targeting GlgE in an alpha-glucan pathway. Nat Chem Biol 6, 376-384, doi:10.1038/nchembio.340 (2010).
-
(2010)
Nat Chem Biol
, vol.6
, pp. 376-384
-
-
Kalscheuer, R.1
-
4
-
-
77951245174
-
Last step in the conversion of trehalose to glycogen: A mycobacterial enzyme that transfers maltose from maltose 1-phosphate to glycogen
-
Elbein, A. D., Pastuszak, I., Tackett, A. J., Wilson, T. & Pan, Y. T. Last step in the conversion of trehalose to glycogen: a mycobacterial enzyme that transfers maltose from maltose 1-phosphate to glycogen. J Biol Chem 285, 9803-9812, doi:10.1074/jbc.M109.033944 (2010).
-
(2010)
J Biol Chem
, vol.285
, pp. 9803-9812
-
-
Elbein, A.D.1
Pastuszak, I.2
Tackett, A.J.3
Wilson, T.4
Pan, Y.T.5
-
5
-
-
79954442657
-
The significance of GlgE as a new target for tuberculosis
-
Kalscheuer, R. & Jacobs, W. R., Jr. The significance of GlgE as a new target for tuberculosis. Drug News Perspect 23, 619-624, doi:10.1358/dnp.2010.23.10.1534855 (2010).
-
(2010)
Drug News Perspect
, vol.23
, pp. 619-624
-
-
Kalscheuer, R.1
Jacobs, W.R.2
-
6
-
-
84876459348
-
Flux through trehalose synthase flows from trehalose to the alpha anomer of maltose in mycobacteria
-
Miah, F. et al. Flux through trehalose synthase flows from trehalose to the alpha anomer of maltose in mycobacteria. Chem Biol 20, 487-493, doi:10.1016/j.chembiol.2013.02.014 (2013).
-
(2013)
Chem Biol
, vol.20
, pp. 487-493
-
-
Miah, F.1
-
7
-
-
33751429907
-
Expression and characterization of alpha-(1,4)-glucan branching enzyme Rv1326c of Mycobacterium tuberculosis H37Rv
-
Garg, S. K., Alam, M. S., Kishan, K. V. & Agrawal, P. Expression and characterization of alpha-(1,4)-glucan branching enzyme Rv1326c of Mycobacterium tuberculosis H37Rv. Protein Expr Purif 51, 198-208, doi:10.1016/j.pep.2006.08.005 (2007).
-
(2007)
Protein Expr Purif
, vol.51
, pp. 198-208
-
-
Garg, S.K.1
Alam, M.S.2
Kishan, K.V.3
Agrawal, P.4
-
8
-
-
80053459692
-
High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism
-
Griffin, J. E. et al. High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism. PLoS Pathog 7, e1002251, doi:10.1371/journal.ppat.1002251 (2011).
-
(2011)
PLoS Pathog
, vol.7
-
-
Griffin, J.E.1
-
9
-
-
17644373124
-
The OtsAB pathway is essential for trehalose biosynthesis in Mycobacterium tuberculosis
-
Murphy, H. N. et al. The OtsAB pathway is essential for trehalose biosynthesis in Mycobacterium tuberculosis. J Biol Chem 280, 14524-14529, doi:10.1074/jbc.M414232200 (2005).
-
(2005)
J Biol Chem
, vol.280
, pp. 14524-14529
-
-
Murphy, H.N.1
-
10
-
-
84905216311
-
Themolecular biology of mycobacterial trehalose in the quest for advanced tuberculosis therapies
-
Nobre, A., Alarico, S., Maranha, A.,Mendes, V. & Empadinhas, N. Themolecular biology of mycobacterial trehalose in the quest for advanced tuberculosis therapies. Microbiology 160, 1547-1570, doi:10.1099/mic.0.075895-0 (2014).
-
(2014)
Microbiology
, vol.160
, pp. 1547-1570
-
-
Nobre, A.1
Alarico, S.2
Maranha, A.3
Mendes, V.4
Empadinhas, N.5
-
11
-
-
84867050665
-
Probing the mycobacterial trehalome with bioorthogonal chemistry
-
Swarts, B. M. et al. Probing the mycobacterial trehalome with bioorthogonal chemistry. J Am Chem Soc 134, 16123-16126, doi:10.1021/ja3062419 (2012).
-
(2012)
J Am Chem Soc
, vol.134
, pp. 16123-16126
-
-
Swarts, B.M.1
-
12
-
-
3142742712
-
Trehalose is required for growth of Mycobacterium smegmatis
-
Woodruff, P. J. et al. Trehalose is required for growth of Mycobacterium smegmatis. J Biol Chem 279, 28835-28843, doi:10.1074/jbc.M313103200 (2004).
-
(2004)
J Biol Chem
, vol.279
, pp. 28835-28843
-
-
Woodruff, P.J.1
-
13
-
-
0033972606
-
Three pathways for trehalose biosynthesis in mycobacteria
-
De Smet, K. A., Weston, A., Brown, I. N., Young, D. B. & Robertson, B. D. Three pathways for trehalose biosynthesis in mycobacteria. Microbiology 146, 199-208 (2000).
-
(2000)
Microbiology
, vol.146
, pp. 199-208
-
-
De Smet, K.A.1
Weston, A.2
Brown, I.N.3
Young, D.B.4
Robertson, B.D.5
-
14
-
-
8644245771
-
Trehalose synthase of Mycobacterium smegmatis: Purification, cloning, expression, and properties of the enzyme
-
Pan, Y. T. et al. Trehalose synthase of Mycobacterium smegmatis: purification, cloning, expression, and properties of the enzyme. Eur J Biochem 271, 4259-4269, doi:10.1111/j.1432-1033.2004.04365.x (2004).
-
(2004)
Eur J Biochem
, vol.271
, pp. 4259-4269
-
-
Pan, Y.T.1
-
15
-
-
44949249840
-
Trehalose synthase converts glycogen to trehalose
-
Pan, Y. T. et al. Trehalose synthase converts glycogen to trehalose. FEBS J 275, 3408-3420, doi:10.1111/j.1742-4658.2008.06491.x (2008).
-
(2008)
FEBS J
, vol.275
, pp. 3408-3420
-
-
Pan, Y.T.1
-
16
-
-
0014198207
-
Identification of alpha,alpha-trehalose 6,6'-dimannosylphosphate and alpha-maltose 1-phosphate of Mycobacteria
-
Narumi, K. & Tsumita, T. Identification of alpha,alpha-trehalose 6,6'-dimannosylphosphate and alpha-maltose 1-phosphate of Mycobacteria. J Biol Chem 242, 2233-2239 (1967).
-
(1967)
J Biol Chem
, vol.242
, pp. 2233-2239
-
-
Narumi, K.1
Tsumita, T.2
-
17
-
-
0030591439
-
Maltokinase (ATP:Maltose 1-phosphotransferase) from Actinoplanes sp.: Demonstration of enzyme activity and characterization of the reaction product
-
Drepper, A., Peitzmann, R. & Pape, H. Maltokinase (ATP:maltose 1-phosphotransferase) from Actinoplanes sp.: demonstration of enzyme activity and characterization of the reaction product. FEBS Lett 388, 177-179, doi:10.1016/0014-5793(96)00554-6 (1996).
-
(1996)
FEBS Lett
, vol.388
, pp. 177-179
-
-
Drepper, A.1
Peitzmann, R.2
Pape, H.3
-
18
-
-
0141956316
-
Isolation and characterization of maltokinase (ATP:Maltose 1-phosphotransferase) from Actinoplanes missouriensis
-
Niehues, B. et al. Isolation and characterization of maltokinase (ATP:maltose 1-phosphotransferase) from Actinoplanes missouriensis . Arch Microbiol 180, 233-239, doi:10.1007/s00203-003-0575-y (2003).
-
(2003)
Arch Microbiol
, vol.180
, pp. 233-239
-
-
Niehues, B.1
-
19
-
-
84863933998
-
Biosynthesis of mycobacterial methylglucose lipopolysaccharides
-
Mendes, V., Maranha, A., Alarico, S. & Empadinhas, N. Biosynthesis of mycobacterial methylglucose lipopolysaccharides. Nat Prod Rep 29, 834-844, doi:10.1039/c2np20014g (2012).
-
(2012)
Nat Prod Rep
, vol.29
, pp. 834-844
-
-
Mendes, V.1
Maranha, A.2
Alarico, S.3
Empadinhas, N.4
-
20
-
-
84893770146
-
Synthesis of a Cphosphonate mimic of maltose-1-phosphate and inhibition studies on Mycobacterium tuberculosis GlgE
-
Veleti, S. K., Lindenberger, J. J., Ronning, D. R. & Sucheck, S. J. Synthesis of a Cphosphonate mimic of maltose-1-phosphate and inhibition studies on Mycobacterium tuberculosis GlgE. Bioorg Med Chem 22, 1404-1411, doi:10.1016/j.bmc.2013.12.058 (2014).
-
(2014)
Bioorg Med Chem
, vol.22
, pp. 1404-1411
-
-
Veleti, S.K.1
Lindenberger, J.J.2
Ronning, D.R.3
Sucheck, S.J.4
-
21
-
-
80055084613
-
Structure of streptomyces maltosyltransferase GlgE, a homologue of a genetically validated anti-tuberculosis target
-
Syson, K. et al. Structure of Streptomyces maltosyltransferase GlgE, a homologue of a genetically validated anti-tuberculosis target. J Biol Chem 286, 38298-38310, doi:10.1074/jbc.M111.279315 (2011).
-
(2011)
J Biol Chem
, vol.286
, pp. 38298-38310
-
-
Syson, K.1
-
22
-
-
84880926719
-
The structure of the Mycobacterium smegmatis trehalose synthase reveals an unusual active site configuration and acarbose-binding mode
-
Caner, S. et al . The structure of the Mycobacterium smegmatis trehalose synthase reveals an unusual active site configuration and acarbose-binding mode. Glycobiology 23, 1075-1083, doi:10.1093/glycob/cwt044 (2013).
-
(2013)
Glycobiology
, vol.23
, pp. 1075-1083
-
-
Caner, S.1
-
23
-
-
77954240010
-
Crystal structure of full-length Mycobacterium tuberculosis H37Rv glycogen branching enzyme: Insights of N-terminal beta-sandwich in substrate specificity and enzymatic activity
-
Pal, K. et al. Crystal structure of full-length Mycobacterium tuberculosis H37Rv glycogen branching enzyme: insights of N-terminal beta-sandwich in substrate specificity and enzymatic activity. J Biol Chem 285, 20897-20903, doi:10.1074/ jbc.M110.121707 (2010).
-
(2010)
J Biol Chem
, vol.285
, pp. 20897-20903
-
-
Pal, K.1
-
24
-
-
84886522329
-
Synthesis of alpha-glucan in mycobacteria involves a heterooctameric complex of trehalose synthase TreS and Maltokinase Pep2
-
Roy, R. et al. Synthesis of alpha-glucan in mycobacteria involves a heterooctameric complex of trehalose synthase TreS and Maltokinase Pep2. ACS Chem Biol 8, 2245-2255, doi:10.1021/cb400508k (2013).
-
(2013)
ACS Chem Biol
, vol.8
, pp. 2245-2255
-
-
Roy, R.1
-
25
-
-
84899457053
-
Structural insight into how Streptomyces coelicolor maltosyl transferase GlgE binds alpha-maltose 1-phosphate and forms a maltosyl-enzyme intermediate
-
Syson, K. et al. Structural insight into how Streptomyces coelicolor maltosyl transferase GlgE binds alpha-maltose 1-phosphate and forms a maltosyl-enzyme intermediate. Biochemistry 53, 2494-2504, doi:10.1021/bi500183c (2014).
-
(2014)
Biochemistry
, vol.53
, pp. 2494-2504
-
-
Syson, K.1
-
26
-
-
77952699926
-
Biochemical characterization of the maltokinase from Mycobacterium bovis BCG
-
Mendes, V., Maranha, A., Lamosa, P., da Costa, M. S. & Empadinhas, N. Biochemical characterization of the maltokinase from Mycobacterium bovis BCG. BMC Biochem 11, 21, doi:10.1186/1471-2091-11-21 (2010).
-
(2010)
BMC Biochem
, vol.11
, pp. 21
-
-
Mendes, V.1
Maranha, A.2
Lamosa, P.3
Da Costa, M.S.4
Empadinhas, N.5
-
27
-
-
52049096824
-
Cystatins: Biochemical and structural properties, and medical relevance
-
Turk, V., Stoka, V. & Turk, D. Cystatins: biochemical and structural properties, and medical relevance. Front Biosci 13, 5406-5420, doi:10.2741/3089 (2008).
-
(2008)
Front Biosci
, vol.13
, pp. 5406-5420
-
-
Turk, V.1
Stoka, V.2
Turk, D.3
-
28
-
-
6344238950
-
Isolation of mak1 from Actinoplanes missouriensis and evidence that Pep2 from Streptomyces coelicolor is a maltokinase
-
Jarling, M., Cauvet, T., Grundmeier, M., Kuhnert, K. & Pape, H. Isolation of mak1 from Actinoplanes missouriensis and evidence that Pep2 from Streptomyces coelicolor is a maltokinase. J Basic Microbiol 44, 360-373, doi:10.1002/jobm.200410403 (2004).
-
(2004)
J Basic Microbiol
, vol.44
, pp. 360-373
-
-
Jarling, M.1
Cauvet, T.2
Grundmeier, M.3
Kuhnert, K.4
Pape, H.5
-
29
-
-
78650491780
-
Mycobacterium leprae: Genes, pseudogenes and genetic diversity
-
Singh, P. & Cole, S. T. Mycobacterium leprae: genes, pseudogenes and genetic diversity. Future Microbiol 6, 57-71, doi:10.2217/fmb.10.153 (2011).
-
(2011)
Future Microbiol
, vol.6
, pp. 57-71
-
-
Singh, P.1
Cole, S.T.2
-
30
-
-
0036716927
-
Glycogen metabolism loss: A common marker of parasitic behaviour in bacteria?
-
Henrissat, B.,Deleury, E.&Coutinho, P. M. Glycogen metabolism loss: a common marker of parasitic behaviour in bacteria? Trends Genet 18, 437-440, doi:10.1016/S0168-9525(02)02734-8 (2002).
-
(2002)
Trends Genet
, vol.18
, pp. 437-440
-
-
Henrissat, B.1
Deleury, E.2
Coutinho, P.M.3
-
31
-
-
67650141987
-
Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus
-
Ripoll, F. et al. Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus. PLoS One 4, e5660, doi:10.1371/journal.pone.0005660 (2009).
-
(2009)
PLoS One
, vol.4
-
-
Ripoll, F.1
-
32
-
-
34547586984
-
Structures of 5-methylthioribose kinase reveal substrate specificity and unusual mode of nucleotide binding
-
Ku, S. Y. et al. Structures of 5-methylthioribose kinase reveal substrate specificity and unusual mode of nucleotide binding. J Biol Chem 282, 22195-22206, doi:10.1074/jbc.M611045200 (2007).
-
(2007)
J Biol Chem
, vol.282
, pp. 22195-22206
-
-
Ku, S.Y.1
-
33
-
-
33947226782
-
Structural and functional diversity of the microbial kinome
-
Kannan, N., Taylor, S. S., Zhai, Y., Venter, J. C. & Manning, G. Structural and functional diversity of the microbial kinome. PLoS Biol 5, e17, doi:10.1371/journal.pbio.0050017 (2007).
-
(2007)
PLoS Biol
, vol.5
, pp. e17
-
-
Kannan, N.1
Taylor, S.S.2
Zhai, Y.3
Venter, J.C.4
Manning, G.5
-
34
-
-
41849110846
-
Structural evolution of the protein kinase-like superfamily
-
Scheeff, E. D. & Bourne, P. E. Structural evolution of the protein kinase-like superfamily. PLoS Comput Biol 1, e49, doi:10.1371/journal.pcbi.0010049 (2005).
-
(2005)
PLoS Comput Biol
, vol.1
, pp. e49
-
-
Scheeff, E.D.1
Bourne, P.E.2
-
35
-
-
56649112704
-
Mycobacterium tuberculosis glucosyl-3-phosphoglycerate synthase: Structure of a key enzyme in methylglucose lipopolysaccharide biosynthesis
-
Pereira, P. J. et al. Mycobacterium tuberculosis glucosyl-3-phosphoglycerate synthase: structure of a key enzyme in methylglucose lipopolysaccharide biosynthesis. PLoS One 3, e3748, doi:10.1371/journal.pone.0003748 (2008).
-
(2008)
PLoS One
, vol.3
-
-
Pereira, P.J.1
-
36
-
-
67649422714
-
Fpocket: An open source platform for ligand pocket detection
-
Le Guilloux, V., Schmidtke, P. & Tuffery, P. Fpocket: an open source platform for ligand pocket detection. BMC Bioinformatics 10, 168, doi:10.1186/1471-2105-10-168 (2009).
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 168
-
-
Le Guilloux, V.1
Schmidtke, P.2
Tuffery, P.3
-
37
-
-
84923045274
-
Homotypic dimerization of a maltose kinase for molecular scaffolding
-
Li, J. et al. Homotypic dimerization of a maltose kinase for molecular scaffolding. Sci Rep 4, 6418, doi:10.1038/srep06418 (2014).
-
(2014)
Sci Rep
, vol.4
, pp. 6418
-
-
Li, J.1
-
38
-
-
84859739752
-
Structural basis for dual nucleotide selectivity of aminoglycoside 2" -phosphotransferase IVa provides insight on determinants of nucleotide specificity of aminoglycoside kinases
-
Shi, K. & Berghuis, A. M. Structural basis for dual nucleotide selectivity of aminoglycoside 2"-phosphotransferase IVa provides insight on determinants of nucleotide specificity of aminoglycoside kinases. J Biol Chem 287, 13094-13102, doi:10.1074/jbc.M112.349670 (2012).
-
(2012)
J Biol Chem
, vol.287
, pp. 13094-13102
-
-
Shi, K.1
Berghuis, A.M.2
-
39
-
-
84879577910
-
Reinterpreting the action of ATP analogs on K(ATP) channels
-
Ortiz, D., Gossack, L., Quast, U. & Bryan, J. Reinterpreting the action of ATP analogs on K(ATP) channels. J Biol Chem 288, 18894-18902, doi:10.1074/jbc.M113.476887 (2013).
-
(2013)
J Biol Chem
, vol.288
, pp. 18894-18902
-
-
Ortiz, D.1
Gossack, L.2
Quast, U.3
Bryan, J.4
-
40
-
-
33846203792
-
2+ 1-ATPase complexes with ATP, AMPPCP and AMPPNP. An FTIR study
-
2+ 1-ATPase complexes with ATP, AMPPCP and AMPPNP. An FTIR study. Biochim Biophys Acta 1767, 114-123, doi:10.1016/j.bbabio.2006.11.003 (2007).
-
(2007)
Biochim Biophys Acta
, vol.1767
, pp. 114-123
-
-
Krasteva, M.1
Barth, A.2
-
41
-
-
0035979336
-
Structural analyses of nucleotide binding to an aminoglycoside phosphotransferase
-
Burk, D. L., Hon, W. C., Leung, A. K. & Berghuis, A. M. Structural analyses of nucleotide binding to an aminoglycoside phosphotransferase. Biochemistry 40, 8756-8764, doi:10.1021/bi010504p (2001).
-
(2001)
Biochemistry
, vol.40
, pp. 8756-8764
-
-
Burk, D.L.1
Hon, W.C.2
Leung, A.K.3
Berghuis, A.M.4
-
42
-
-
0030830868
-
Structure of an enzyme required for aminoglycoside antibiotic resistance reveals homology to eukaryotic protein kinases
-
Hon, W. C. et al. Structure of an enzyme required for aminoglycoside antibiotic resistance reveals homology to eukaryotic protein kinases. Cell 89, 887-895, doi:10.1016/S0092-8674(00)80274-3 (1997).
-
(1997)
Cell
, vol.89
, pp. 887-895
-
-
Hon, W.C.1
-
43
-
-
67649413348
-
The crystal structures of substrate and nucleotide complexes of Enterococcus faecium aminoglycoside-2"-phosphotransferase-IIa [APH(2")-IIa] provide insights into substrate selectivity in the APH(2") subfamily
-
Young, P. G. et al. The crystal structures of substrate and nucleotide complexes of Enterococcus faecium aminoglycoside-2"-phosphotransferase-IIa [APH(2")-IIa] provide insights into substrate selectivity in the APH(2") subfamily. J Bacteriol 191, 4133-4143, doi:10.1128/JB.00149-09 (2009).
-
(2009)
J Bacteriol
, vol.191
, pp. 4133-4143
-
-
Young, P.G.1
-
44
-
-
84903707661
-
Two newly identified sites in the N-terminal regulatory domain of Aurora-A are essential for auto-inhibition
-
Bai, M. et al. Two newly identified sites in the N-terminal regulatory domain of Aurora-A are essential for auto-inhibition. Biotechnol Lett 36, 1595-1604, doi:10.1007/s10529-014-1516-3 (2014).
-
(2014)
Biotechnol Lett
, vol.36
, pp. 1595-1604
-
-
Bai, M.1
-
45
-
-
84906248043
-
Divergent modulation of Src-family kinase regulatory interactions with ATP-competitive inhibitors
-
Leonard, S. E., Register, A. C., Krishnamurty, R., Brighty, G. J. & Maly, D. J. Divergent Modulation of Src-Family Kinase Regulatory Interactions with ATPCompetitive Inhibitors. ACS Chem Biol, doi:10.1021/cb500371g (2014).
-
(2014)
ACS Chem Biol
-
-
Leonard, S.E.1
Register, A.C.2
Krishnamurty, R.3
Brighty, G.J.4
Maly, D.J.5
-
46
-
-
0033047695
-
The role of the trehalose system in regulating the maltose regulon of Escherichia coli
-
Decker, K., Gerhardt, F. & Boos, W. The role of the trehalose system in regulating the maltose regulon of Escherichia coli. Mol Microbiol 32, 777-788, doi:10.1046/j.1365-2958.1999.01395.x (1999).
-
(1999)
Mol Microbiol
, vol.32
, pp. 777-788
-
-
Decker, K.1
Gerhardt, F.2
Boos, W.3
-
47
-
-
0031409343
-
Molecular action of anti-mycobacterial agents
-
Chopra, I. & Brennan, P. Molecular action of anti-mycobacterial agents. Tuber Lung Dis 78, 89-98, doi:10.1016/S0962-8479(98)80001-4 (1997).
-
(1997)
Tuber Lung Dis
, vol.78
, pp. 89-98
-
-
Chopra, I.1
Brennan, P.2
-
48
-
-
84890330527
-
MEGA6: Molecular evolutionary genetics analysis version 6.0
-
Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol 30, 2725-2729, doi:10.1093/molbev/mst197 (2013).
-
(2013)
Mol Biol Evol
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
49
-
-
79954529507
-
ProtTest 3: Fast selection of best-fit models of protein evolution
-
Darriba, D., Taboada, G. L., Doallo, R. & Posada, D. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27, 1164-1165, doi:10.1093/bioinformatics/btr088 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 1164-1165
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
50
-
-
78650235606
-
Functional and structural characterization of a novel mannosyl-3-phosphoglycerate synthase from Rubrobacter xylanophilus reveals its dual substrate specificity
-
Empadinhas, N. et al. Functional and structural characterization of a novel mannosyl-3-phosphoglycerate synthase from Rubrobacter xylanophilus reveals its dual substrate specificity. Mol Microbiol 79, 76-93, doi:10.1111/j.1365-2958.2010.07432.x (2011).
-
(2011)
Mol Microbiol
, vol.79
, pp. 76-93
-
-
Empadinhas, N.1
-
51
-
-
0001220414
-
Separation of carbohydrates on borate-impregnated silica gel G plates
-
Jacin, H. & Mishkin, A. R. Separation of Carbohydrates on Borate-Impregnated Silica Gel G Plates. J Chromatogr 18, 170-173, doi:10.1016/S0021-9673(01)80341-1 (1965).
-
(1965)
J Chromatogr
, vol.18
, pp. 170-173
-
-
Jacin, H.1
Mishkin, A.R.2
-
52
-
-
0014484121
-
Two forms of D-glycerate kinase in Escherichia coli
-
Ornston, M. K. & Ornston, L. N. Two forms of D-glycerate kinase in Escherichia coli. J Bacteriol 97, 1227-1233 (1969).
-
(1969)
J Bacteriol
, vol.97
, pp. 1227-1233
-
-
Ornston, M.K.1
Ornston, L.N.2
-
53
-
-
33748929006
-
Thermofluor-based high-throughput stability optimization of proteins for structural studies
-
Ericsson, U. B., Hallberg, B. M., Detitta, G. T., Dekker, N. & Nordlund, P. Thermofluor-based high-throughput stability optimization of proteins for structural studies. Anal Biochem 357, 289-298, doi:10.1016/j.ab.2006.07.027 (2006).
-
(2006)
Anal Biochem
, vol.357
, pp. 289-298
-
-
Ericsson, U.B.1
Hallberg, B.M.2
Detitta, G.T.3
Dekker, N.4
Nordlund, P.5
-
54
-
-
33947537616
-
An automated microseed matrix-screening method for protein crystallization
-
D'Arcy, A., Villard, F. & Marsh, M. An automated microseed matrix-screening method for protein crystallization. Acta CrystallogrDBiol Crystallogr 63, 550-554, doi:10.1107/S0907444907007652 (2007).
-
(2007)
Acta Crystallogr D Biol Crystallogr
, vol.63
, pp. 550-554
-
-
D'Arcy, A.1
Villard, F.2
Marsh, M.3
-
56
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn, M. D. et al. Overview of the CCP4 suite and current developments. Acta Crystallogr D Biol Crystallogr 67, 235-242, doi:10.1107/S0907444910045749 (2011).
-
(2011)
Acta Crystallogr D Biol Crystallogr
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
-
57
-
-
77950793231
-
Experimental phasing with SHELXC/D/E: Combining chain tracing with density modification
-
Sheldrick, G. M. Experimental phasing with SHELXC/D/E: combining chain tracing with density modification. Acta CrystallogrDBiol Crystallogr 66, 479-485, doi:10.1107/S0907444909038360 (2010).
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 479-485
-
-
Sheldrick, G.M.1
-
58
-
-
50249136103
-
Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7
-
Langer, G., Cohen, S. X., Lamzin, V. S. & Perrakis, A. Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7. Nat Protoc 3, 1171-1179, doi:10.1038/nprot.2008.91 (2008).
-
(2008)
Nat Protoc
, vol.3
, pp. 1171-1179
-
-
Langer, G.1
Cohen, S.X.2
Lamzin, V.S.3
Perrakis, A.4
-
59
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J. et al. Phaser crystallographic software. J Appl Crystallogr 40, 658-674, doi:10.1107/S0021889807021206 (2007).
-
(2007)
J Appl Crystallogr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
-
60
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. Features and development of Coot. Acta Crystallogr D Biol Crystallogr 66, 486-501, doi:10.1107/S0907444910007493 (2010).
-
(2010)
Acta Crystallogr d Biol Crystallogr
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
61
-
-
84860273177
-
Towards automated crystallographic structure refinement with phenix.Refine
-
Afonine, P. V. et al. Towards automated crystallographic structure refinement with phenix.refine. Acta Crystallogr D Biol Crystallogr 68, 352-367, doi:10.1107/S0907444912001308 (2012).
-
(2012)
Acta Crystallogr d Biol Crystallogr
, vol.68
, pp. 352-367
-
-
Afonine, P.V.1
-
62
-
-
72949101201
-
A phylogeny-driven genomic encyclopaedia of bacteria and Archaea
-
Wu,D. et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 462, 1056-1060, doi:10.1038/nature08656 (2009).
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
-
63
-
-
66449110019
-
Characterization of Solanum tuberosum multicystatin and its structural comparison with other cystatins
-
Nissen, M. S. et al. Characterization of Solanum tuberosum multicystatin and its structural comparison with other cystatins. Plant Cell 21, 861-875, doi:10.1105/ tpc.108.064717 (2009).
-
(2009)
Plant Cell
, vol.21
, pp. 861-875
-
-
Nissen, M.S.1
|