-
1
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 a resolution
-
Luger, K.,Mäder, A. W., Richmond, R. K., Sargent, D. F.& Richmond, T. J. Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389, 251-260 (1997).
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mäder, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
2
-
-
84923045469
-
Chromatin dynamics and higher-order chromatin organization
-
[Meyers, R. A. (ed.)] [631-656] Wiley-VCH, Weinheim
-
Zeilner, A., Piatti, P. & Lusser, A. [Chromatin dynamics and higher-order chromatin organization] Advances in molecular biology and medicine: Epigenetic Regulation and Epigenomics [Meyers, R. A. (ed.)] [631-656] (Wiley-VCH, Weinheim, 2012).
-
(2012)
Advances in Molecular Biology and Medicine: Epigenetic Regulation and Epigenomics
-
-
Zeilner, A.1
Piatti, P.2
Lusser, A.3
-
3
-
-
42649094468
-
Global transcription in pluripotent embryonic stem cells
-
Efroni, S. et al. Global transcription in pluripotent embryonic stem cells. Cell Stem Cell 2, 437-447 (2008).
-
(2008)
Cell Stem Cell
, vol.2
, pp. 437-447
-
-
Efroni, S.1
-
4
-
-
77954819820
-
Chromatin plasticity and genome organization in pluripotent embryonic stem cells
-
Mattout, A. & Meshorer, E. Chromatin plasticity and genome organization in pluripotent embryonic stem cells. Curr Opin Cell Biol 22, 334-341 (2010).
-
(2010)
Curr Opin Cell Biol
, vol.22
, pp. 334-341
-
-
Mattout, A.1
Meshorer, E.2
-
5
-
-
64549156935
-
Genome-wide reduction in H3K9 acetylation during human embryonic stem cell differentiation
-
Krejcí, J. et al. Genome-wide reduction in H3K9 acetylation during human embryonic stem cell differentiation. J. Cell. Physiol. 219, 677-687 (2009).
-
(2009)
J. Cell. Physiol.
, vol.219
, pp. 677-687
-
-
Krejcí, J.1
-
6
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B. E. et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125, 315-326 (2006).
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
-
7
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen, T. S. et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448, 553-560 (2007).
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
-
8
-
-
60849097568
-
Chromatin remodeling in embryonic stem cells: Regulating the balance between pluripotency and differentiation
-
Keenen, B. & la Serna, de, I. L. Chromatin remodeling in embryonic stem cells: regulating the balance between pluripotency and differentiation. J. Cell. Physiol. 219, 1-7 (2009).
-
(2009)
J. Cell. Physiol.
, vol.219
, pp. 1-7
-
-
Keenen, B.1
La Serna De, I.L.2
-
9
-
-
75749101495
-
Chromatin remodelling during development
-
Ho, L.&Crabtree, G. R. Chromatin remodelling during development. Nature 463, 474-484 (2010).
-
(2010)
Nature
, vol.463
, pp. 474-484
-
-
Ho, L.1
Crabtree, G.R.2
-
10
-
-
84919876453
-
Epigenetic regulation of open chromatin in pluripotent stem cells
-
Kobayashi, H.&Kikyo, N. Epigenetic regulation of open chromatin in pluripotent stem cells. Transl Res (2014) doi:10.1016/j.trsl.2014.03.004.
-
(2014)
Transl Res
-
-
Kobayashi, H.1
Kikyo, N.2
-
11
-
-
78650467973
-
Open chromatin in pluripotency and reprogramming
-
Gaspar-Maia, A., Alajem, A., Meshorer, E. & Ramalho-Santos, M. Open chromatin in pluripotency and reprogramming. Nat Rev Mol Cell Biol 12, 36-47 (2011).
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, pp. 36-47
-
-
Gaspar-Maia, A.1
Alajem, A.2
Meshorer, E.3
Ramalho-Santos, M.4
-
12
-
-
0029157378
-
Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions
-
Eisen, J. A., Sweder, K. S. & Hanawalt, P. C. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res 23, 2715-2723 (1995).
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 2715-2723
-
-
Eisen, J.A.1
Sweder, K.S.2
Hanawalt, P.C.3
-
13
-
-
33745122231
-
Identification of multiple distinct Snf2 subfamilies with conserved structural motifs
-
Flaus, A., Martin, D. M. A., Barton, G. J. & Owen-Hughes, T. Identification of multiple distinct Snf2 subfamilies with conserved structural motifs. Nucleic Acids Res 34, 2887-2905 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2887-2905
-
-
Flaus, A.1
Martin, D.M.A.2
Barton, G.J.3
Owen-Hughes, T.4
-
14
-
-
67650725820
-
The biology of chromatin remodeling complexes
-
Clapier, C. R. & Cairns, B. R. The biology of chromatin remodeling complexes. Annu Rev Biochem 78, 273-304 (2009).
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 273-304
-
-
Clapier, C.R.1
Cairns, B.R.2
-
15
-
-
80052970429
-
Mechanisms for ATP-dependent chromatin remodelling: The means to the end
-
Flaus, A. & Owen-Hughes, T. Mechanisms for ATP-dependent chromatin remodelling: the means to the end. FEBS J 278, 3579-3595 (2011).
-
(2011)
FEBS J
, vol.278
, pp. 3579-3595
-
-
Flaus, A.1
Owen-Hughes, T.2
-
16
-
-
80055063786
-
ATP-dependent chromatin remodeling factors and their roles in affecting nucleosome fiber composition
-
Piatti, P., Zeilner, A. & Lusser, A. ATP-Dependent Chromatin Remodeling Factors and Their Roles in Affecting Nucleosome Fiber Composition. Int J Mol Sci 12, 6544-6565 (2011).
-
(2011)
Int J Mol Sci
, vol.12
, pp. 6544-6565
-
-
Piatti, P.1
Zeilner, A.2
Lusser, A.3
-
17
-
-
65249173999
-
An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network
-
Ho, L. et al. An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network. Proc Natl Acad Sci USA 106, 5187-5191 (2009).
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5187-5191
-
-
Ho, L.1
-
18
-
-
84860189381
-
HDAC1 regulates pluripotency and lineage specific transcriptional networks in embryonic and trophoblast stem cells
-
Kidder, B. L. & Palmer, S. HDAC1 regulates pluripotency and lineage specific transcriptional networks in embryonic and trophoblast stem cells. Nucleic Acids Res 40, 2925-2939 (2012).
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 2925-2939
-
-
Kidder, B.L.1
Palmer, S.2
-
19
-
-
46149110511
-
An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity
-
Fazzio, T. G., Huff, J. T. & Panning, B. An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity. Cell 134, 162-174 (2008).
-
(2008)
Cell
, vol.134
, pp. 162-174
-
-
Fazzio, T.G.1
Huff, J.T.2
Panning, B.3
-
20
-
-
33644764030
-
The NuRD component Mbd3 is required for pluripotency of embryonic stem cells
-
Kaji, K. et al. The NuRD component Mbd3 is required for pluripotency of embryonic stem cells. Nat. Cell Biol. 8, 285-292 (2006).
-
(2006)
Nat. Cell Biol.
, vol.8
, pp. 285-292
-
-
Kaji, K.1
-
21
-
-
84860647928
-
NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment
-
Reynolds, N. et al. NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment. Cell Stem Cell 10, 583-594 (2012).
-
(2012)
Cell Stem Cell
, vol.10
, pp. 583-594
-
-
Reynolds, N.1
-
22
-
-
55449104935
-
Essential role of chromatin remodeling protein Bptf in early mouse embryos and embryonic stem cells
-
Landry, J. et al. Essential role of chromatin remodeling protein Bptf in early mouse embryos and embryonic stem cells. PLoS Genet 4, e1000241 (2008).
-
(2008)
PLoS Genet
, vol.4
-
-
Landry, J.1
-
23
-
-
84899742411
-
INO80 facilitates pluripotency gene activation in embryonic stem cell self-renewal, reprogramming, and blastocyst development
-
Wang, L. et al. INO80 Facilitates Pluripotency Gene Activation in Embryonic Stem Cell Self-Renewal, Reprogramming, and Blastocyst Development. Cell Stem Cell 14, 575-591 (2014).
-
(2014)
Cell Stem Cell
, vol.14
, pp. 575-591
-
-
Wang, L.1
-
24
-
-
15544369061
-
Distinct activities of CHD1 and ACF in ATP-dependent chromatin assembly
-
Lusser, A., Urwin, D. L. & Kadonaga, J. T. Distinct activities of CHD1 and ACF in ATP-dependent chromatin assembly. Nat Struct Mol Biol 12, 160-166 (2005).
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 160-166
-
-
Lusser, A.1
Urwin, D.L.2
Kadonaga, J.T.3
-
25
-
-
34548272156
-
CHD1 motor protein is required for deposition of histone variant H3.3 into chromatin in vivo
-
Konev, A. Y. et al. CHD1 motor protein is required for deposition of histone variant H3.3 into chromatin in vivo. Science 317, 1087-1090 (2007).
-
(2007)
Science
, vol.317
, pp. 1087-1090
-
-
Konev, A.Y.1
-
26
-
-
68949164755
-
Chd1 regulates open chromatin and pluripotency of embryonic stem cells
-
Gaspar-Maia, A. et al. Chd1 regulates open chromatin and pluripotency of embryonic stem cells. Nature 460, 863-868 (2009).
-
(2009)
Nature
, vol.460
, pp. 863-868
-
-
Gaspar-Maia, A.1
-
27
-
-
55449092929
-
Drosophila kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II
-
Srinivasan, S., Dorighi, K. M. & Tamkun, J. W. Drosophila Kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II. PLoS Genet 4, e1000217 (2008).
-
(2008)
PLoS Genet
, vol.4
-
-
Srinivasan, S.1
Dorighi, K.M.2
Tamkun, J.W.3
-
28
-
-
79955617206
-
The chromodomains of CHD1 are critical for enzymatic activity but less important for chromatin localization
-
Morettini, S. et al. The chromodomains of CHD1 are critical for enzymatic activity but less important for chromatin localization. Nucleic Acids Res 39, 3103-3115 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3103-3115
-
-
Morettini, S.1
-
29
-
-
84455200582
-
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
-
Ram, O. et al. Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells. Cell 147, 1628-1639 (2011).
-
(2011)
Cell
, vol.147
, pp. 1628-1639
-
-
Ram, O.1
-
30
-
-
0345698603
-
Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes
-
Simic, R. et al. Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes. EMBO J 22, 1846-1856 (2003).
-
(2003)
EMBO J
, vol.22
, pp. 1846-1856
-
-
Simic, R.1
-
31
-
-
0032961892
-
CHD1 interacts with SSRP1 and depends on both its chromodomain and its ATPase/helicase-like domain for proper association with chromatin
-
Kelley, D. E., Stokes, D. G. & Perry, R. P. CHD1 interacts with SSRP1 and depends on both its chromodomain and its ATPase/helicase-like domain for proper association with chromatin. Chromosoma 108, 10-25 (1999).
-
(1999)
Chromosoma
, vol.108
, pp. 10-25
-
-
Kelley, D.E.1
Stokes, D.G.2
Perry, R.P.3
-
32
-
-
80054748043
-
Mediator coordinates PIC assembly with recruitment of CHD1
-
Lin, J. J. et al. Mediator coordinates PIC assembly with recruitment of CHD1. Genes Dev 25, 2198-2209 (2011).
-
(2011)
Genes Dev
, vol.25
, pp. 2198-2209
-
-
Lin, J.J.1
-
33
-
-
0042850300
-
CHD1 associates with NCoR and histone deacetylase as well as with RNA splicing proteins
-
Tai, H. H. et al. CHD1 associates with NCoR and histone deacetylase as well as with RNA splicing proteins. Biochem Biophys Res Commun 308, 170-176 (2003).
-
(2003)
Biochem Biophys Res Commun
, vol.308
, pp. 170-176
-
-
Tai, H.H.1
-
34
-
-
36249027156
-
Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
-
Sims, R. J. et al. Recognition of Trimethylated Histone H3 Lysine 4 Facilitates the Recruitment of Transcription Postinitiation Factors and Pre-mRNA Splicing. Mol Cell 28, 665-676 (2007).
-
(2007)
Mol Cell
, vol.28
, pp. 665-676
-
-
Sims, R.J.1
-
35
-
-
0029962975
-
Inducible site-directed recombination in mouse embryonic stem cells
-
Zhang, Y. et al. Inducible site-directed recombination in mouse embryonic stem cells. Nucleic Acids Res 24, 543-548 (1996).
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 543-548
-
-
Zhang, Y.1
-
36
-
-
84870710526
-
Otx2 is an intrinsic determinant of the embryonic stem cell state and is required for transition to a stable epiblast stem cell condition
-
Acampora, D., Di Giovannantonio, L. G. & Simeone, A. Otx2 is an intrinsic determinant of the embryonic stem cell state and is required for transition to a stable epiblast stem cell condition. Development 140, 43-55 (2013).
-
(2013)
Development
, vol.140
, pp. 43-55
-
-
Acampora, D.1
Di Giovannantonio, L.G.2
Simeone, A.3
-
37
-
-
58849097959
-
Making a commitment: Cell lineage allocation and axis patterning in the early mouse embryo
-
Arnold, S. J. & Robertson, E. J. Making a commitment: cell lineage allocation and axis patterning in the early mouse embryo. Nat Rev Mol Cell Biol 10, 91-103 (2009).
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 91-103
-
-
Arnold, S.J.1
Robertson, E.J.2
-
38
-
-
80052511434
-
The T-box transcription factor eomesodermin acts upstream of Mesp1 to specify cardiac mesoderm during mouse gastrulation
-
Costello, I. et al. The T-box transcription factor Eomesodermin acts upstream of Mesp1 to specify cardiac mesoderm during mouse gastrulation. Nat. Cell Biol. 13, 1084-1091 (2011).
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 1084-1091
-
-
Costello, I.1
-
39
-
-
28644442419
-
Induction and monitoring of definitive and visceral endoderm differentiation of mouse ES cells
-
Yasunaga, M. et al. Induction and monitoring of definitive and visceral endoderm differentiation of mouse ES cells. Nat Biotechnol 23, 1542-1550 (2005).
-
(2005)
Nat Biotechnol
, vol.23
, pp. 1542-1550
-
-
Yasunaga, M.1
-
40
-
-
0027937398
-
Localization of transcription factor GATA-4 to regions of the mouse embryo involved in cardiac development
-
Heikinheimo, M., Scandrett, J. M. & Wilson, D. B. Localization of transcription factor GATA-4 to regions of the mouse embryo involved in cardiac development. Dev Biol 164, 361-373 (1994).
-
(1994)
Dev Biol
, vol.164
, pp. 361-373
-
-
Heikinheimo, M.1
Scandrett, J.M.2
Wilson, D.B.3
-
41
-
-
4344565788
-
GATA4 is essential for formation of the proepicardium and regulates cardiogenesis
-
Watt, A. J., Battle, M. A., Li, J.&Duncan, S. A. GATA4 is essential for formation of the proepicardium and regulates cardiogenesis. Proc Natl Acad Sci USA 101, 12573-12578 (2004).
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 12573-12578
-
-
Watt, A.J.1
Battle, M.A.2
Li, J.3
Duncan, S.A.4
-
43
-
-
0028826473
-
Targeted mutagenesis of the transcription factor GATA-4 gene in mouse embryonic stem cells disrupts visceral endoderm differentiation in vitro
-
Soudais, C. et al. Targeted mutagenesis of the transcription factor GATA-4 gene in mouse embryonic stem cells disrupts visceral endoderm differentiation in vitro. Development 121, 3877-3888 (1995).
-
(1995)
Development
, vol.121
, pp. 3877-3888
-
-
Soudais, C.1
-
44
-
-
0032533241
-
GATA6 regulates HNF4 and is required for differentiation of visceral endoderm in the mouse embryo
-
Morrisey, E. E. et al. GATA6 regulates HNF4 and is required for differentiation of visceral endoderm in the mouse embryo. Genes Dev 12, 3579-3590 (1998).
-
(1998)
Genes Dev
, vol.12
, pp. 3579-3590
-
-
Morrisey, E.E.1
-
45
-
-
0027142391
-
Targeted deletion of beta 1 integrins in F9 embryonal carcinoma cells affects morphological differentiation but not tissue-specific gene expression
-
Stephens, L. E., Sonne, J. E., Fitzgerald, M. L.&Damsky, C. H. Targeted deletion of beta 1 integrins in F9 embryonal carcinoma cells affects morphological differentiation but not tissue-specific gene expression. J Cell Biol 123, 1607-1620 (1993).
-
(1993)
J Cell Biol
, vol.123
, pp. 1607-1620
-
-
Stephens, L.E.1
Sonne, J.E.2
Fitzgerald, M.L.3
Damsky, C.H.4
-
46
-
-
61949320567
-
Integrins are required for the differentiation of visceral endoderm
-
Liu, J. et al. Integrins are required for the differentiation of visceral endoderm. J Cell Sci 122, 233-242 (2009).
-
(2009)
J Cell Sci
, vol.122
, pp. 233-242
-
-
Liu, J.1
-
47
-
-
84899620204
-
The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1
-
Skene, P. J., Hernandez, A. E., Groudine, M. & Henikoff, S. The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1. elife 3, e02042 (2014).
-
(2014)
Elife
, vol.3
-
-
Skene, P.J.1
Hernandez, A.E.2
Groudine, M.3
Henikoff, S.4
-
48
-
-
0036570236
-
Noggin and chordin have distinct activities in promoting lineage commitment of mouse embryonic stem (ES) cells
-
Gratsch, T. E. & O'Shea, K. S. Noggin and chordin have distinct activities in promoting lineage commitment of mouse embryonic stem (ES) cells. Dev Biol 245, 83-94 (2002).
-
(2002)
Dev Biol
, vol.245
, pp. 83-94
-
-
Gratsch, T.E.1
O'Shea, K.S.2
-
49
-
-
84901473732
-
Transcription factor heterogeneity in pluripotent stem cells: A stochastic advantage
-
Torres-Padilla, M.-E. & Chambers, I. Transcription factor heterogeneity in pluripotent stem cells: a stochastic advantage. Development 141, 2173-2181 (2014).
-
(2014)
Development
, vol.141
, pp. 2173-2181
-
-
Torres-Padilla, M.-E.1
Chambers, I.2
-
50
-
-
84904463366
-
TGF-β signaling to chromatin:How Smads regulate transcription during self-renewal and differentiation
-
Gaarenstroom, T.&Hill, C. S. TGF-β signaling to chromatin:How Smads regulate transcription during self-renewal and differentiation. Semin Cell Dev Biol (2014) doi:10.1016/j.semcdb.2014.01.009.
-
(2014)
Semin Cell Dev Biol
-
-
Gaarenstroom, T.1
Hill, C.S.2
-
51
-
-
84920522426
-
Human CHD2 is a chromatin assembly ATPase regulated by its chromo- and DNA-binding domains
-
Liu, J. C., Ferreira, C. G. & Yusufzai, T. Human CHD2 Is a Chromatin Assembly ATPase Regulated by Its Chromo- and DNA-binding Domains. J Biol Chem (2014) doi:10.1074/jbc.M114.609156.
-
(2014)
J Biol Chem
-
-
Liu, J.C.1
Ferreira, C.G.2
Yusufzai, T.3
-
52
-
-
33748271305
-
Mutation of the SNF2 family member Chd2 affects mouse development and survival
-
Marfella, C. G. A. et al.Mutation of the SNF2 family member Chd2 affects mouse development and survival. J. Cell. Physiol. 209, 162-171 (2006).
-
(2006)
J. Cell. Physiol.
, vol.209
, pp. 162-171
-
-
Marfella, C.G.A.1
-
53
-
-
84893777171
-
Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions
-
Morris, S. A. et al. Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions. Nat Struct Mol Biol 21, 73-81 (2014).
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 73-81
-
-
Morris, S.A.1
-
54
-
-
34047223844
-
Simple one-week method to construct gene-targeting vectors: Application to production of human knockout cell lines
-
Iiizumi, S. et al. Simple one-week method to construct gene-targeting vectors: application to production of human knockout cell lines. BioTechniques 41, 311-316 (2006).
-
(2006)
BioTechniques
, vol.41
, pp. 311-316
-
-
Iiizumi, S.1
-
55
-
-
79952197320
-
Methods for embryoid body formation: The microwell approach
-
Spelke, D. P., Ortmann, D., Khademhosseini, A., Ferreira, L. & Karp, J. M. Methods for embryoid body formation: the microwell approach. Methods Mol Biol 690, 151-162 (2011).
-
(2011)
Methods Mol Biol
, vol.690
, pp. 151-162
-
-
Spelke, D.P.1
Ortmann, D.2
Khademhosseini, A.3
Ferreira, L.4
Karp, J.M.5
|