Using the candidate gene approach for detecting genes underlying seed oil concentration and yield in soybean

Theoretical and Applied Genetics

Volumn 126, Issue 7, 2013, Pages 1839-1850

  Eskandari, Mehrzad ^a   Cober, Elroy R ^b   Rajcan, Istvan ^a  

^a UNIVERSITY OF GUELPH   (Canada)

^b AGRICULTURE AND AGRI FOOD CANADA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BIODIESEL PRODUCTION; BIOSYNTHESIS PATHWAYS; ENVIRONMENTAL CONDITIONS; GENE-SPECIFIC MARKERS; MARKER-ASSISTED SELECTION; NON-CODING REGION; PROTEIN CONCENTRATIONS; QUANTITATIVE TRAITS;

BIOCHEMISTRY; GENES; GLYCEROL; OILS AND FATS; PHOSPHOLIPIDS; PROTEINS;

SOYBEAN OIL;

VEGETABLE OIL;

AMINO ACID SEQUENCE; ARTICLE; CANADA; CROSS BREEDING; DNA SEQUENCE; GENETIC MARKER; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLANT GENE; PLANT SEED; QUANTITATIVE TRAIT LOCUS; SEQUENCE ALIGNMENT; SOYBEAN;

AMINO ACID SEQUENCE; BASE SEQUENCE; CROSSES, GENETIC; GENES, PLANT; GENETIC MARKERS; MOLECULAR SEQUENCE DATA; ONTARIO; PHENOTYPE; PLANT OILS; QUANTITATIVE TRAIT LOCI; SEEDS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SOYBEANS;

GLYCINE MAX;

EID: 84881613734     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-013-2096-7     Document Type: Article

References (44)

1. Arslanoglu F, Aytac S, Oner EK (2011) Effect of genotype and environment interaction on oil and protein content of soybean (Glycine max (L.) Merrill) seed. Afr J Biotechnol 10(80): 18409-18417
2. Bailey-Serres J, Dawe RK (1996) Both 5 and 3 Sequences of Maize adh7 mRNA are required for enhanced translation under lowoxygen conditions. Plant Physiol 11(2):685-695
3. Beisson F, Koo AJK, Ruuska S, Schwender J, Pollard M, Thelen JJ, Paddock T, Salas JJ, Savage L, Milcamps A et al (2003) Arabidopsis genes involved in acyl lipid metabolism: a 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a Web-based database. Plant Physiol 132:681-697
4. Bourdon V, Harvey A, Lonsdale DM (2001) Introns and their positions affect the translational activity of mRNA in plant cells. EMBO Rep 2:394-398
5. Bouvier-Nave P, Benveniste P, Oelkers P, Sturley SL, Schaller H (2000) Expression in yeast and tobacco of plant cDNAs encoding acyl CoA:diacylglycerol acyltransferase. Eur J Biochem 267:85-96
6. Browse J, Somerville C (1991) Glycerolipid metabolism, biochemistry and regulation. Annu Rev Plant Physiol Plant Mol Biol 42:467-506
7. Burgal J, Shockey J, Lu CF, Dyer J, Larson T, Graham I, Browse J (2008) Metabolic engineering of hydroxy fatty acid production in plants: RcDGAT2 drives dramatic increases in ricinoleate levels in seed oil. Plant Biotechnol J 6:819-831
8. Dahlqvist A, Stahl U, Lenman M, Banas A, Lee M, Sandager L, Ronne H, Stymne S (2000) Phospholipid:diacylglycerol acyltransferase: an enzyme that catalyzes the acyl-CoA independent formation of triacylglycerol in yeast and plants. Proc Natl Acad Sci USA 97:6487-6492
9. Eskandari M, Cober ER, Rajcan I (2013a) Genetic control of soybean seed oil: I. QTL and genes associated with seed oil concentration in RIL populations derived from crossing moderately high oil parents. Theor Appl Genet 126:483-495
10. Eskandari M, Cober ER, Rajcan I (2013b) Genetic control of soybean seed oil: II. QTL and genes that increase oil concentration without decreasing protein or with increased yield. Theor Appl Genet. doi:10.1007/s00122-013-2083-z
11. Floris M, Mahgoub H, Lanet E, Robaglia C, Menand C (2009) Posttranscriptional regulation of gene expression in plants during abiotic stress. Int J Mol Sci 10:3168-3185
12. Gurdeep S, Dhillon SK, Gill BS, Sunita S (2001) Stability analysis for seed yield and quality characters in soybean (Glycine max (L). Merrill). Crop Improv 28(2):244-248
13. Harwood JL (1996) Recent advances in the biosynthesis of plant fatty acids. Biochim Biophys Acta 1301:7-56
14. Hildebrand DF, Li R, Hatanaka T (2008) Genomics of Soybean Oil Traits. In: Stacey G (ed) Genetics and genomics of soybean 12: 185-209
15. Holland JB (1998) EPISTACY: a SAS program for detecting two locus epistatic interactions using genetic marker information. J Hered 89:374-375
16. Jain RK, Coffey M, Lai K, Kumar A, MacKenzie SL (2000) Enhancement of seed oil content by expression of glycerol-3-phosphate acyltransferase genes. Biochem Soc Trans 28:958-961
17. Jako C, Kumar A, Wei YD, Zou JT, Barton DL, Giblin EM, Covello PS, Taylor DC (2001) Seed-specific over-expression of an Arabidopsis cDNA encoding a diacylglycerol acyltransferase enhances seed oil content and seed weight. Plant Physiol 126:861-874
18. Kim E, Magen A, Ast G (2006) Different levels of alternative splicing among eukaryotes. Nucleic Acids Res 35:125-131
19. Kudla G, Murray AW, Tollervey D, Plotkin JB (2009) Coding sequence determinants of gene expression in Escherichia coli. Science 324:255-258
20. Lardizabal K, Effertz R, Levering C, Mai J, Pedroso MC, Jury T, Aasen E, Gruys K, Bennett K (2008) Expression of Umbelopsis ramanniana DGAT2A in seed increases oil in soybean. Plant Physiol 148:89-96
21. Li R, Yu K, Hildebrand DF (2010) DGAT1, DGAT2 and PDAT expression in seeds and other tissues of epoxy and hydroxy fatty acid accumulating plants. Lipids 45:145-157
22. Lock YY, Snyder CL, Zhu WM, Siloto RMP, Weselake RJ, Shah S (2009) Antisense suppression of type 1 diacylglycerol acyltransferase adversely affects plant development in Brassica napus. Physiol Plant 137:61-71
23. Merritt C, Rasoloson D, Ko D, Seydoux G (2008) 3 UTRs Are the Primary Regulators of Gene Expression in the C. elegans Germline. Curr Biol 18:1476-1482
24. Mhaske V, Beldjilali K, Ohlrogge JB, Pollard M (2005) Isolation and characterization of an Arabidopsis thaliana knockout line for phospholipid: diacylglycerol transacylase gene (At5g13640). Plant Physiol Biochem 43:413-417
25. Nozaki T, Cross GA (1995) Effects of 3 untranslated and intergenic regions on gene expression in Trypanosoma cruzi. Mol Biochem Parasitol 75:55-67
26. Oakes J, Brackenridge D, Colletti R, Daley M, Hawkins DJ, Xiong H et al (2011) Expression of fungal diacylglycerol acyltransferase2 genes to increase kernel oil in maize. Plant Physiol 155:146-157
27. Ohlrogge J, Browse J (1995) Lipid biosynthesis. Plant Cell 7:957-970
28. OOPSCC (2013) Ontario oil and protein seed crop committee. http://www.oopscc.org/index.php, reports 2000, 2001, and 2010 (Online)
29. Paran I, Zamir D (2003) Quantitative traits in plants: beyond the QTL. Trends Genet 19:303-306
30. Schlueter JA, Dixon P, Granger C, Grant D, Clark L, Doyle JJ, Shoemaker RC (2004) Mining EST databases to resolve evolutionary events in major crop species. Genome 47:868-876
31. Schlueter JA, Lin JY, Schlueter SD, Vasylenko-Sanders IF, Deshpande S, Yi J, O'Bleness M, Roe BA, Nelson RT, Scheffler BE et al (2007) Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing. BMC Genomics 8:330
32. Schmutz J et al (2010) Genome sequence of the palaeopolyploid soybean. Nature 463:178-183
33. Shockey JM, Gidda SK, Chapital DC, Kuan JC, Dhanoa PK, Bland JM, Rothstein SJ, Mullen RT, Dyer JM (2006) Tung tree DGAT1 and DGAT2 have nonredundant functions in triacylglycerol biosynthesis and are localized to different subdomains of the endoplasmic reticulum. Plant Cell 18:2294-2313
34. Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB (2004) A new integrated genetic linkage map of the soybean. Theor Appl Genet 109: 122-128
35. Sudaric A, Simic D, Vrataric M (2006) Characterization of genotype by environment interactions in soybean breeding programmer of Southeast Europe. Plant Breed 125:191-194
36. Taylor DC, Zhang Y, Kumar A, Francis T et al (2009) Molecular modification of triacylglycerol accumulation by over-expression of DGAT1 to produce canola with increased seed oil content under field conditions. Botany 87:533-543
37. Thiel T, Kota R, Grosse I, Stein N, Graner A (2004) SNP2CAPS: a SNP and INDEL analysis tool for CAPS marker development. Nucl Acids Res 32:5e-5
38. Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R, Leunissen JAM (2007) Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res 35:W71-W74
39. Vigeolas H, Geigenberger P (2004) Increased levels of glycerol-3-phosphate leading to a stimulation of flux into triacylglycerol synthesis after supplying glycerol to developing seeds of Brassica napus L. in planta. Planta 219:827-835
40. Wang HW, Zhang B, Hao YJ, Huang J, Tian AG, Liao Y, Zhang JS, Chen SY (2007) The soybean Dof-type transcription factor genes, GmDof4 and GmDof11, enhance lipid content in the seeds of transgenic Arabidopsis plants. Plant J 52:716-729
41. Weselake RJ, Shah S, Tang M et al (2008) Metabolic control analysis is helpful for informed genetic manipulation of oilseed rape (Brassica napus) to increase seed oil content. J Exp Bot 59:3543-3549
42. Weselake RJ, Taylor DC, Rahman MH, Shah S, Laroche A, McVetty PB, Harwood JL (2009) Increasing the flow of carbon into seed oil. Biotechnol Adv 27:866-878
43. Xu Y, Crouch JH (2008) Marker-assisted selection in plant breeding: from publications to practice. Crop Sci 48:391-407
44. Zheng P, Allen WB, Roesler K, Williams ME, Zhang S, Li J, Glassman K, Ranch J, Nubel D, Solawetz W et al (2008) A phenylalanine in DGAT is a key determinant of oil content and composition in maize. Nat Genet 40:367-372