Impact of genetic bottlenecks on soybean genome diversity

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 45, 2006, Pages 16666-16671

  Hyten, David L ^a,b   Song, Qijian ^a,b   Zhu, Youlin ^a,f   Choi, Ik Young ^a   Nelson, Randall L ^c   Costa, Jose M ^b   Specht, James E ^d   Shoemaker, Randy C ^e   Cregan, Perry B ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b UNIVERSITY OF MARYLAND   (United States)

^c UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^d UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^e IOWA STATE UNIVERSITY   (United States)

^f NANCHANG UNIVERSITY   (China)

Author keywords

Artificial selection; Crop domestication; Genetic diversity; SNPs

Indexed keywords

DNA; PLANT DNA;

ARTICLE; ARTIFICIAL SELECTION; ASIA; CROP DOMESTICATION; CROP PRODUCTION; DNA SEQUENCE; GENETIC VARIABILITY; NONHUMAN; PLANT; POPULATION GENETICS; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; SOYBEAN; UNITED STATES; ALLELE; BREEDING; FOUNDER EFFECT; GENE FREQUENCY; GENETIC SELECTION; GENETICS; GENOME; MOLECULAR EVOLUTION; NORTH AMERICA;

GLYCINE MAX;

ALLELES; BREEDING; DNA, PLANT; EVOLUTION, MOLECULAR; FOUNDER EFFECT; GENE FREQUENCY; GENOME, PLANT; NORTH AMERICA; POLYMORPHISM, SINGLE NUCLEOTIDE; SELECTION (GENETICS); SOYBEANS; VARIATION (GENETICS);

EID: 33750964714     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0604379103     Document Type: Article

References (35)

1. National Research Council, Committee on Genetic Vulnerability of Major Crops (1972) Genetic Vulnerability of Major Crops (Natl Acad Sci, Washington, DC).
2. Esquinas-Alcazar J (2005) Nat Rev Genet 6:946.
3. Tanksley SD, McCouch SR (1997) Science 277:1063-1066.
4. Wilcox JR (2004) in Soybeans: Improvement, Production, and Uses, eds Boerma HR, Specht JE (Am Soc of Agronomy, Crop Sci Soc of Am, Soil Sci Soc of Am, Madison, WI), Vol Agronomy, no 16, pp 1-14.
5. Carter TE, Nelson R, Sneller CH, Cui Z (2004) in Soybeans: Improvement, Production, and Uses, eds Boerma HR, Specht JE (Am Soc of Agronomy, Crop Sei Soc of Am, Soil Sci Soc of Am, Madison, WI), Vol Agronomy, no 16, pp 303-416.
6. Halliburton R (2004) Introduction to Population Genetics (Pearson/Prentice-Hall, Upper Saddle River, NJ).
7. Gizlice Z, Carter TE, Jr, Burton JW (1994) Crop Sci 34:1143-1151.
8. Zhu YL, Song QJ, Hyten DL, Van Tassell CP, Matukumalli LK, Grimm DR, Hyatt SM, Fickus EW, Young ND, Cregan PB (2003) Genetics 163:1123-1134.
9. Tajima F (1983) Genetics 105:437-460.
10. Watterson GA (1975) Theor Popul Biol 7:256-276.
11. Halushka MK, Fan JB, Bentley K, Hsie L, Shen N, Weder A, Cooper R, Lipshutz R, Chakravarti A (1999) Nat Genet 22:239-247.
12. Cargill M, Altshuler D, Ireland J, Sklar P, Ardlie K, Patil N, Shaw N, Lane CR, Lim EP, Kalyanaraman N, et al. (1999) Nat Genet 22:231-238.
13. Hamblin MT, Mitchell SE, White GM, Gallego J, Kukatla R, Wing RA, Paterson AH, Kresovich S (2004) Genetics 167:471-483.
14. Wright SI, Bi IV, Schroeder SG, Yamasaki M, Doebley JF, McMullen MD, Gaut BS (2005) Science 308:1310-1314.
15. Carter TE, Jr, Gizlice Z, Burton JW (1993) Coefficient of Parentage and Genetic Similarity Estimates for 258 North American Soybean Cultivars Released by Public Agencies During 1954-88 (US Government Printing Office, Washington, DC), USDA Tech Bull 1814.
16. Weir BS (1996) Genetic Data Analysis II: Methods for Discrete Population Genetic Data (Sinauer, Sunderland, MA).
17. Tenaillon MI, Sawkins MC, Long AD, Gaut RL, Doebley JF, Gaut BS (2001) Proc Natl Acad Sci USA 98:9161-9166.
18. Anand SC, Gallo KM (1984) Plant Dis 68:593-595.
19. Van Duyn JW, Turnipseed SG, Maxwell JD (1971) Crop Sci 11:572-573.
20. Chamberlain DW, Bernard RL (1968) Crop Sci 8:728-729.
21. Buckler ES, IV, Thornsberry JM, Kresovich S (2001) Genet Res 77:213-218.
22. Brown GR, Gill GP, Kuntz RJ, Langley CH, Neale DB (2004) Proc Natl Acad Sci USA 101:15255-15260.
23. Schmid KJ, Ramos-Onsins S, Ringys-Beckstein H, Weisshaar B, Mitchell-Olds T (2005) Genetics 169:1601-1615.
24. Morrell PL, Toleno DM, Lundy KE, Clegg MT (2005) Proc Natl Acad Sci USA 102:2442-2447.
25. Wright SI, Gaut BS (2005) Mol Biol Evol 22:506-519.
26. Li Z, Nelson RL (2001) Crop Sci 41:1337-1347.
27. Gizlice Z, Carter TE, Jr, Gerig TM, Burton JW (1996) Crop Sci 36:753-765.
28. Keim P, Olson TC, Shoemaker RC (1988) Soybean Genet Newsl 15:150-152.
29. Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB (2004) Theor Appl Genet 109:122-128.
30. Marth GT, Korf I, Yandell MD, Yeh RT, Gu Z, Zakeri H, Stitziel NO, Hillier L, Kwok PY, Gish WR (1999) Nat Genet 23:452-456.
31. Matukumalli L, Grefenstette J, Hyten D, Choi I-Y, Cregan P, Van Tassell C (2006) BMC Bioinformatics 7:4.
32. Gordon D, Abajian C, Green P (1998) Genome Res 8:195-202.
33. Rozas J, Rozas R (1999) Bioinformatics 15:174-175.
34. Hudson RR, Slatkin M, Maddison WP (1992) Genetics 132:583-589.
35. Tajima F (1989) Genetics 123:585-595.