-
1
-
-
3142665836
-
A topological view of the replicon
-
Schvartzman JB, Stasiak A (2004) A topological view of the replicon. EMBO Rep 5: 256-261
-
(2004)
EMBO Rep
, vol.5
, pp. 256-261
-
-
Schvartzman, J.B.1
Stasiak, A.2
-
2
-
-
33749048664
-
Genetical implications of the structure of deoxyribonucleic acids
-
Watson JD, Crick FHC (1953) Genetical implications of the structure of deoxyribonucleic acids. Nature 171:964-967
-
(1953)
Nature
, vol.171
, pp. 964-967
-
-
Watson, J.D.1
Crick, F.H.C.2
-
3
-
-
0038497542
-
Molecular structure of nucleic acids
-
Watson JD, Crick FHC (1953) Molecular structure of nucleic acids. Nature 161:737-738
-
(1953)
Nature
, vol.161
, pp. 737-738
-
-
Watson, J.D.1
Crick, F.H.C.2
-
4
-
-
84921756839
-
The bacterial chromosome and its manner of replication as seen by autoradiography
-
Cairns J (1963) The bacterial chromosome and its manner of replication as seen by autoradiography. J Mol Biol 6:208-213
-
(1963)
J Mol Biol
, vol.6
, pp. 208-213
-
-
Cairns, J.1
-
5
-
-
0014693975
-
Degree of superhelicity of covalently closed cyclic DNA's from Escherichia coli
-
Wang JC (1969) Degree of superhelicity of covalently closed cyclic DNA's from Escherichia coli. J Mol Biol 43:263-272
-
(1969)
J Mol Biol
, vol.43
, pp. 263-272
-
-
Wang, J.C.1
-
6
-
-
0015222656
-
Interaction between DNA and an Escherichia coli protein omega
-
Wang JC (1971) Interaction between DNA and an Escherichia coli protein omega. J Mol Biol 55:523-533
-
(1971)
J Mol Biol
, vol.55
, pp. 523-533
-
-
Wang, J.C.1
-
7
-
-
78651132848
-
The cyclic helix and cyclic coil forms of polyoma viral DNA
-
Weil R, Vinograd J (1963) The cyclic helix and cyclic coil forms of polyoma viral DNA. Proc Natl Acad Sci U S A 50:730-739
-
(1963)
Proc Natl Acad Sci U S A
, vol.50
, pp. 730-739
-
-
Weil, R.1
Vinograd, J.2
-
8
-
-
0013265155
-
Evidence for a ring structure of polyoma virus DNA
-
Dulbecco R, Vogt M (1963) Evidence for a ring structure of polyoma virus DNA. Proc Natl Acad Sci U S A 50:236-243
-
(1963)
Proc Natl Acad Sci U S A
, vol.50
, pp. 236-243
-
-
Dulbecco, R.1
Vogt, M.2
-
9
-
-
0013922468
-
Electrophoretic separation of polyoma virus DNA from host cell DNA
-
Thorne HV (1966) Electrophoretic separation of polyoma virus DNA from host cell DNA. Virology 29:234-239
-
(1966)
Virology
, vol.29
, pp. 234-239
-
-
Thorne, H.V.1
-
10
-
-
69249206661
-
Electrophoresis of DNA in agarose gels, polyacrylamide gels and in free solution
-
Stellwagen NC (2009) Electrophoresis of DNA in agarose gels, polyacrylamide gels and in free solution. Electrophoresis 30(Suppl 1):S188-S195
-
(2009)
Electrophoresis
, vol.30
, Issue.SUPPL1
-
-
Stellwagen, N.C.1
-
11
-
-
0014413509
-
The interaction of closed circular DNA with intercalative dyes
-
Bauer W, Vinograd J (1968) The interaction of closed circular DNA with intercalative dyes. J Mol Biol 33:141-171
-
(1968)
J Mol Biol
, vol.33
, pp. 141-171
-
-
Bauer, W.1
Vinograd, J.2
-
12
-
-
0014944441
-
Interaction of closed circular DNA with intercalative dyes. II. The free energy of superhelix formation in SV40 DNA
-
Bauer W, Vinograd J (1970) Interaction of closed circular DNA with intercalative dyes. II. The free energy of superhelix formation in SV40 DNA. J Mol Biol 47:419-435
-
(1970)
J Mol Biol
, vol.47
, pp. 419-435
-
-
Bauer, W.1
Vinograd, J.2
-
13
-
-
0014945733
-
The interaction of closed circular DNA with intercalative dyes. 3. Dependence of the buoyant density upon superhelix density and base composition
-
Bauer W, Vinogradj (1970) The interaction of closed circular DNA with intercalative dyes. 3. Dependence of the buoyant density upon superhelix density and base composition. J Mol Biol 54:281-298
-
(1970)
J Mol Biol
, vol.54
, pp. 281-298
-
-
Bauer, W.1
Vinograd, J.2
-
14
-
-
0001074488
-
Determination of the number of superhelical turns in simian virus 40 DNA by gel electrophoresis
-
Keller W (1975) Determination of the number of superhelical turns in simian virus 40 DNA by gel electrophoresis. Proc Natl Acad Sci U S A 72:4876-4880
-
(1975)
Proc Natl Acad Sci U S A
, vol.72
, pp. 4876-4880
-
-
Keller, W.1
-
15
-
-
0014202608
-
A fl uorescent complex between ethidium bromide and nucleic acids. Physical-chemical characterization
-
LePecq JB, Paoletti C (1967) A fl uorescent complex between ethidium bromide and nucleic acids. Physical-chemical characterization. J Mol Biol 27:87-106
-
(1967)
J Mol Biol
, vol.27
, pp. 87-106
-
-
LePecq, J.B.1
Paoletti, C.2
-
16
-
-
85048645035
-
Structural considerations in the interaction of DNA and acridines
-
Lerman LS (1961) Structural considerations in the interaction of DNA and acridines. J Mol Biol 3:18-30
-
(1961)
J Mol Biol
, vol.3
, pp. 18-30
-
-
Lerman, L.S.1
-
17
-
-
0016423686
-
The sense of naturally occurring superhelices and the unwinding angle of intercalated ethidium
-
Pulleyblank DE, Morgan AR (1975) The sense of naturally occurring superhelices and the unwinding angle of intercalated ethidium. J Mol Biol 91:1-13
-
(1975)
J Mol Biol
, vol.91
, pp. 1-13
-
-
Pulleyblank, D.E.1
Morgan, A.R.2
-
18
-
-
0021103928
-
Separation of branched from linear DNA by two-dimensional gel electrophoresis
-
Bell L, Byers B (1983) Separation of branched from linear DNA by two-dimensional gel electrophoresis. Anal Biochem 130:527-535
-
(1983)
Anal Biochem
, vol.130
, pp. 527-535
-
-
Bell, L.1
Byers, B.2
-
19
-
-
0023646792
-
The localization of replication origins on ARS plasmids in S cerevisiae
-
Brewer BJ, Fangman WL (1987) The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51:463-471
-
(1987)
Cell
, vol.51
, pp. 463-471
-
-
Brewer, B.J.1
Fangman, W.L.2
-
20
-
-
0023646749
-
The in vivo replication origin of the yeast 2 mm plasmid
-
Huberman JA, Spotila LD, Nawotka KA, El-Assouli SM, Davis LR (1987) The in vivo replication origin of the yeast 2 mm plasmid. Cell 51:473-481
-
(1987)
Cell
, vol.51
, pp. 473-481
-
-
Huberman, J.A.1
Spotila, L.D.2
Nawotka, K.A.3
El-Assouli, S.M.4
Davis, L.R.5
-
22
-
-
0022353304
-
Replication of pBR322 DNA in vitro with purifi ed proteins
-
Minden JS, Marians KJ (1985) Replication of pBR322 DNA in vitro with purifi ed proteins. J Biol Chem 260:9316-9325
-
(1985)
J Biol Chem
, vol.260
, pp. 9316-9325
-
-
Minden, J.S.1
Marians, K.J.2
-
23
-
-
0019886153
-
Separation of closed circular DNA from linear DNA by electrophoresis in two dimensions in agarose gels
-
Oppenheim A (1981) Separation of closed circular DNA from linear DNA by electrophoresis in two dimensions in agarose gels. Nucleic Acids Res 9:6805-6812
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 6805-6812
-
-
Oppenheim, A.1
-
24
-
-
0018958519
-
Terminal stages of SV40 DNA replication proceed via multiply intertwined catenated dimers
-
Sundin O, Varshavsky A (1980) Terminal stages of SV40 DNA replication proceed via multiply intertwined catenated dimers. Cell 21:103-114
-
(1980)
Cell
, vol.21
, pp. 103-114
-
-
Sundin, O.1
Varshavsky, A.2
-
25
-
-
0019417775
-
Arrest of segregation leads to accumulation of highly intertwined catenated dimers dissection of the fi nal stages of SV40 DNA replication
-
Sundin O, Varshavsky A (1981) Arrest of segregation leads to accumulation of highly intertwined catenated dimers dissection of the fi nal stages of SV40 DNA replication. Cell 25:659-669
-
(1981)
Cell
, vol.25
, pp. 659-669
-
-
Sundin, O.1
Varshavsky, A.2
-
27
-
-
36348982154
-
DNA is more negatively supercoiled in bacterial plasmids than in minichromosomes isolated from budding yeast
-
Mayan-Santos MD, Martinez-Robles ML, Hernandez P, Krimer D, Schvartzman JB (2007) DNA is more negatively supercoiled in bacterial plasmids than in minichromosomes isolated from budding yeast. Electrophoresis 28:3845-3853
-
(2007)
Electrophoresis
, vol.28
, pp. 3845-3853
-
-
Mayan-Santos, M.D.1
Martinez-Robles, M.L.2
Hernandez, P.3
Krimer, D.4
Schvartzman, J.B.5
-
28
-
-
79952656985
-
-
John Wiley & Sons, Inc. DOI: 10.1038/npg.els.0001038
-
Mirkin SM (2001) DNA topology: Fundamentals, John Wiley & Sons, Inc. DOI: 10.1038/npg.els.0001038
-
(2001)
DNA topology: Fundamentals
-
-
Mirkin, S.M.1
-
29
-
-
84860381368
-
Topo IV is the topoisomerase that knots and unknots sister duplexes during DNA replication
-
Lopez V, Martinez-Robles ML, Hernandez P, Krimer DB, Schvartzman JB (2012) Topo IV is the topoisomerase that knots and unknots sister duplexes during DNA replication. Nucleic Acids Res 40:3563-3573
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3563-3573
-
-
Lopez, V.1
Martinez-Robles, M.L.2
Hernandez, P.3
Krimer, D.B.4
Schvartzman, J.B.5
-
30
-
-
69849112239
-
Interplay of DNA supercoiling and catenation during the segregation of sister duplexes
-
Martinez-Robles ML et al (2009) Interplay of DNA supercoiling and catenation during the segregation of sister duplexes. Nucleic Acids Res 37:5126-5137
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5126-5137
-
-
Martinez-Robles, M.L.1
-
31
-
-
0026712869
-
The role of topoisomerase-IV in partitioning bacterial replicons and the structure of catenated intermediates in DNA replication
-
Adams DE, Shekhtman EM, Zechiedrich EL, Schmid MB, Cozzarelli NR (1992) The role of topoisomerase-IV in partitioning bacterial replicons and the structure of catenated intermediates in DNA replication. Cell 71:277-288
-
(1992)
Cell
, vol.71
, pp. 277-288
-
-
Adams, D.E.1
Shekhtman, E.M.2
Zechiedrich, E.L.3
Schmid, M.B.4
Cozzarelli, N.R.5
-
33
-
-
0036441489
-
Knotting dynamics during DNA replication
-
Olavarrieta L, Martínez-Robles ML, Hernández P, Krimer DB, Schvartzman JB (2002) Knotting dynamics during DNA replication. Mol Microbiol 46:699-707
-
(2002)
Mol Microbiol
, vol.46
, pp. 699-707
-
-
Olavarrieta, L.1
Martínez-Robles, M.L.2
Hernández, P.3
Krimer, D.B.4
Schvartzman, J.B.5
-
34
-
-
0036464531
-
Supercoiling, knotting and replication fork reversal in partially replicated plasmids
-
Olavarrieta L et al (2002) Supercoiling, knotting and replication fork reversal in partially replicated plasmids. Nucleic Acids Res 30:656-666
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 656-666
-
-
Olavarrieta, L.1
-
35
-
-
0033605230
-
Formation of knots in partially replicated DNA molecules
-
Sogo JM et al (1999) Formation of knots in partially replicated DNA molecules. J Mol Biol 286:637-643
-
(1999)
J Mol Biol
, vol.286
, pp. 637-643
-
-
Sogo, J.M.1
-
36
-
-
0029829131
-
The ColE1 unidirectional origin acts as a polar replication fork pausing site
-
Viguera E et al (1996) The ColE1 unidirectional origin acts as a polar replication fork pausing site. J Biol Chem 271:22414-22421
-
(1996)
J Biol Chem
, vol.271
, pp. 22414-22421
-
-
Viguera, E.1
-
37
-
-
34547095273
-
Replication fork reversal occurs spontaneously after digestion but is constrained in supercoiled domains
-
Fierro-Fernandez M, Hernandez P, Krimer DB, Schvartzman JB (2007) Replication fork reversal occurs spontaneously after digestion but is constrained in supercoiled domains. J Biol Chem 282:18190-18196
-
(2007)
J Biol Chem
, vol.282
, pp. 18190-18196
-
-
Fierro-Fernandez, M.1
Hernandez, P.2
Krimer, D.B.3
Schvartzman, J.B.4
-
38
-
-
33846820469
-
Topological locking restrains replication fork reversal
-
Fierro-Fernandez M, Hernandez P, Krimer DB, Stasiak A, Schvartzman JB (2007) Topological locking restrains replication fork reversal. Proc Natl Acad Sci U S A 104:1500-1505
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 1500-1505
-
-
Fierro-Fernandez, M.1
Hernandez, P.2
Krimer, D.B.3
Stasiak, A.4
Schvartzman, J.B.5
-
39
-
-
44349176520
-
Regression supports two mechanisms of fork processing in phage T4
-
Long DT, Kreuzer KN (2008) Regression supports two mechanisms of fork processing in phage T4. Proc Natl Acad Sci U S A 105: 6852-6857
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 6852-6857
-
-
Long, D.T.1
Kreuzer, K.N.2
-
40
-
-
64049087591
-
Fork regression is an active helicase-driven pathway in bacteriophage T4
-
Long DT, Kreuzer KN (2009) Fork regression is an active helicase-driven pathway in bacteriophage T4. EMBO Rep 10:394-399
-
(2009)
EMBO Rep
, vol.10
, pp. 394-399
-
-
Long, D.T.1
Kreuzer, K.N.2
-
41
-
-
0035797383
-
The DNA replication checkpoint response stabilizes stalled replication forks
-
Lopes M et al (2001) The DNA replication checkpoint response stabilizes stalled replication forks. Nature 412:557-561
-
(2001)
Nature
, vol.412
, pp. 557-561
-
-
Lopes, M.1
-
42
-
-
33745184666
-
Formation and processing of stalled replication forks-utility of two-dimensional agarose gels
-
Pohlhaus J, Kreuzer K (2006) Formation and processing of stalled replication forks-utility of two-dimensional agarose gels. Methods Enzymol 409:477-493
-
(2006)
Methods Enzymol
, vol.409
, pp. 477-493
-
-
Pohlhaus, J.1
Kreuzer, K.2
-
43
-
-
0035951787
-
Positive torsional strain causes the formation of a four-way junction at replication forks
-
Postow L et al (2001) Positive torsional strain causes the formation of a four-way junction at replication forks. J Biol Chem 276:2790-2796
-
(2001)
J Biol Chem
, vol.276
, pp. 2790-2796
-
-
Postow, L.1
-
44
-
-
0037178740
-
Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects
-
Sogo JM, Lopes M, Foiani M (2002) Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects. Science 297:599-602
-
(2002)
Science
, vol.297
, pp. 599-602
-
-
Sogo, J.M.1
Lopes, M.2
Foiani, M.3
-
45
-
-
0343550301
-
Visualisation of plasmid replication intermediates containing reversed forks
-
Viguera E, Hernandez P, Krimer DB, Lurz R, Schvartzman JB (2000) Visualisation of plasmid replication intermediates containing reversed forks. Nucleic Acids Res 28:498-503
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 498-503
-
-
Viguera, E.1
Hernandez, P.2
Krimer, D.B.3
Lurz, R.4
Schvartzman, J.B.5
-
46
-
-
0034733378
-
Premature termination of DNA replication in plasmids carrying two inversely oriented ColE1 origins
-
Santamaría D, Hernández P, Martínez-Robles ML, Krimer DB, Schvartzman JB (2000) Premature termination of DNA replication in plasmids carrying two inversely oriented ColE1 origins. J Mol Biol 300:75-82
-
(2000)
J Mol Biol
, vol.300
, pp. 75-82
-
-
Santamaría, D.1
Hernández, P.2
Martínez-Robles, M.L.3
Krimer, D.B.4
Schvartzman, J.B.5
-
49
-
-
0021320555
-
Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling
-
Horowitz DS, Wang JC (1984) Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling. J Mol Biol 173:75-91
-
(1984)
J Mol Biol
, vol.173
, pp. 75-91
-
-
Horowitz, D.S.1
Wang, J.C.2
-
50
-
-
33745762610
-
Topoisomerase II, not topoisomerase I, is the profi cient relaxase of nucleosomal DNA
-
Salceda J, Fernandez X, Roca J (2006) Topoisomerase II, not topoisomerase I, is the profi cient relaxase of nucleosomal DNA. EMBO J 25:2575-2583
-
(2006)
EMBO J
, vol.25
, pp. 2575-2583
-
-
Salceda, J.1
Fernandez, X.2
Roca, J.3
-
51
-
-
0028851598
-
Analysis of replication intermediates by two-dimensional agarose gel electrophoresis
-
Campbell JL (ed Academic Press Inc., San Diego, CA
-
Friedman KL, Brewer BJ (1995) Analysis of replication intermediates by two-dimensional agarose gel electrophoresis. In: Campbell JL (ed) DNA replication, methods in enzymology, vol 262. Academic Press Inc., San Diego, CA, pp 613-627
-
(1995)
DNA replication, methods in enzymology
, vol.262
, pp. 613-627
-
-
Friedman, K.L.1
Brewer, B.J.2
|