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Volumn 5, Issue 3, 2004, Pages 256-261

A topological view of the replicon

Author keywords

Catenane; Knot; Plasmid; Replication; Supercoiling

Indexed keywords

CATENANE; CIRCULAR DNA; DNA POLYMERASE; DNA TOPOISOMERASE; DOUBLE STRANDED DNA; HELICASE;

EID: 3142665836     PISSN: 1469221X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.embor.7400101     Document Type: Review
Times cited : (106)

References (56)
  • 2
    • 0024316735 scopus 로고
    • DNA gyrase can supercoil DNA circles as small as 174 base pairs
    • Bates AD, Maxwell A (1989) DNA gyrase can supercoil DNA circles as small as 174 base pairs. EMBO J 8: 1861-1866
    • (1989) EMBO J. , vol.8 , pp. 1861-1866
    • Bates, A.D.1    Maxwell, A.2
  • 5
    • 0028049305 scopus 로고
    • The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo
    • Bednar J, Furrer P, Stasiak A, Dubochet J, Egelman EH, Bates AD (1994) The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo. J Mol Biol 235: 825-847
    • (1994) J. Mol. Biol. , vol.235 , pp. 825-847
    • Bednar, J.1    Furrer, P.2    Stasiak, A.3    Dubochet, J.4    Egelman, E.H.5    Bates, A.D.6
  • 6
    • 0023117639 scopus 로고
    • Use of site-specific recombination as a probe of DNA structure and metabolism in vivo
    • Bliska JB, Cozzarelli NR (1987) Use of site-specific recombination as a probe of DNA structure and metabolism in vivo. J Mol Biol 194: 205-218
    • (1987) J. Mol. Biol. , vol.194 , pp. 205-218
    • Bliska, J.B.1    Cozzarelli, N.R.2
  • 7
    • 84922252956 scopus 로고    scopus 로고
    • Supercoiled DNA: Structure
    • Nature Publishing Group 2002. www.els.net
    • Bowater RP (2002) Supercoiled DNA: Structure. Encyclopedia of Life Sciences. Nature Publishing Group 2002. www.els.net
    • (2002) Encyclopedia of Life Sciences
    • Bowater, R.P.1
  • 8
    • 0024276903 scopus 로고
    • When polymerases collide: Replication and the transcriptional organization of the E. coli chromosome
    • Brewer BJ (1988) When polymerases collide: replication and the transcriptional organization of the E. coli chromosome. Cell 53: 679-686
    • (1988) Cell , vol.53 , pp. 679-686
    • Brewer, B.J.1
  • 9
    • 0034923502 scopus 로고    scopus 로고
    • DNA topoisomerases: Structure, function, and mechanism
    • Champoux JJ (2001) DNA topoisomerases: Structure, function, and mechanism. Annu Rev Biochem 70: 369-413
    • (2001) Annu. Rev. Biochem. , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 11
    • 0043194014 scopus 로고    scopus 로고
    • Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases
    • Charvin G, Bensimon D, Croquette V (2003) Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases. Proc Natl Acad Sci USA 100: 9820-9825
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9820-9825
    • Charvin, G.1    Bensimon, D.2    Croquette, V.3
  • 12
    • 0018876228 scopus 로고
    • DNA gyrase and the supercoiling of DNA
    • Cozzarelli NR (1980) DNA gyrase and the supercoiling of DNA. Science 207: 953-960
    • (1980) Science , vol.207 , pp. 953-960
    • Cozzarelli, N.R.1
  • 13
    • 0034669232 scopus 로고    scopus 로고
    • Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements
    • Crisona NJ, Strick TR, Bensimon D, Croquette V, Cozzarelli NR (2000) Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements. Genes Dev 14: 2881-2892
    • (2000) Genes Dev. , vol.14 , pp. 2881-2892
    • Crisona, N.J.1    Strick, T.R.2    Bensimon, D.3    Croquette, V.4    Cozzarelli, N.R.5
  • 14
    • 0021092942 scopus 로고
    • Torsional stress induces left-handed helical stretches in DNA of natural base sequence: Circular dichroism and antibody binding
    • DiCapua E, Stasiak A, Koller T, Brahms S, Thomae R, Pohl FM (1983) Torsional stress induces left-handed helical stretches in DNA of natural base sequence: circular dichroism and antibody binding. EMBO J 2: 1531-1535
    • (1983) EMBO J. , vol.2 , pp. 1531-1535
    • DiCapua, E.1    Stasiak, A.2    Koller, T.3    Brahms, S.4    Thomae, R.5    Pohl, F.M.6
  • 15
    • 0037249352 scopus 로고    scopus 로고
    • Temporal regulation of topoisomerase IV activity in E. coli
    • Espeli O, Levine C, Hassing H, Marians KJ (2003) Temporal regulation of topoisomerase IV activity in E. coli. Mol Cell 11: 189-201
    • (2003) Mol. Cell , vol.11 , pp. 189-201
    • Espeli, O.1    Levine, C.2    Hassing, H.3    Marians, K.J.4
  • 16
    • 0023664708 scopus 로고
    • In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome
    • Funnell BE, Baker TA, Kornberg A (1987) In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome. J Biol Chem 262: 10327-10334
    • (1987) J. Biol. Chem. , vol.262 , pp. 10327-10334
    • Funnell, B.E.1    Baker, T.A.2    Kornberg, A.3
  • 18
    • 0027976667 scopus 로고
    • Decatenating activity of Escherichia coli DNA gyrase and topoisomerases I and II during oriC and pBR322 DNA replication in vitro
    • Hiasa H, Digate RJ, Marians KJ (1994) Decatenating activity of Escherichia coli DNA gyrase and topoisomerases I and II during oriC and pBR322 DNA replication in vitro. J Biol Chem 269: 2093-2099
    • (1994) J. Biol. Chem. , vol.269 , pp. 2093-2099
    • Hiasa, H.1    Digate, R.J.2    Marians, K.J.3
  • 19
    • 16544387644 scopus 로고    scopus 로고
    • Topological behaviour of plasmid DNA
    • Phillips G, Funnell BE (eds), Washington DC: ASM
    • Higgins NP, Vologodskii AV (2004) Topological behaviour of plasmid DNA. In Plasmid Biology, Phillips G, Funnell BE (eds), 181-201. Washington DC: ASM
    • (2004) Plasmid Biology , pp. 181-201
    • Higgins, N.P.1    Vologodskii, A.V.2
  • 20
    • 0347504849 scopus 로고    scopus 로고
    • Decatenation of DNA circles by FtsK-dependent Xer site-specific recombination
    • Ip SCY, Bregu M, Barre FX, Sherratt DJ (2003) Decatenation of DNA circles by FtsK-dependent Xer site-specific recombination. EMBO J 22: 6399-6407
    • (2003) EMBO J. , vol.22 , pp. 6399-6407
    • Ip, S.C.Y.1    Bregu, M.2    Barre, F.X.3    Sherratt, D.J.4
  • 24
    • 0001731921 scopus 로고
    • Roles of supercoiled DNA structure in DNA transactions
    • Kanaar R, Cozzarelli NR (1992) Roles of supercoiled DNA structure in DNA transactions. Curr Opin Struct Biol 2: 369-379
    • (1992) Curr. Opin. Struct. Biol. , vol.2 , pp. 369-379
    • Kanaar, R.1    Cozzarelli, N.R.2
  • 26
    • 0032189275 scopus 로고    scopus 로고
    • DNA gyrase and topoisomerase IV: Biochemical activities, physiological roles during chromosome replication, and drug sensitivities
    • Levine C, Hiasa H, Marians KJ (1998) DNA gyrase and topoisomerase IV: Biochemical activities, physiological roles during chromosome replication, and drug sensitivities. BBA Gene Struct Express 1400: 29-43
    • (1998) BBA Gene Struct Express , vol.1400 , pp. 29-43
    • Levine, C.1    Hiasa, H.2    Marians, K.J.3
  • 28
    • 0035890272 scopus 로고    scopus 로고
    • Topoisomerase II can unlink replicating DNA by precatenane removal
    • Lucas I, Germe T, Chevrier-Miller M, Hyrien O (2001) Topoisomerase II can unlink replicating DNA by precatenane removal. EMBO J 20: 6509-6519
    • (2001) EMBO J. , vol.20 , pp. 6509-6519
    • Lucas, I.1    Germe, T.2    Chevrier-Miller, M.3    Hyrien, O.4
  • 30
    • 0038063026 scopus 로고    scopus 로고
    • The replicon theory 40 years: An EMBO workshop held January in Villefranche sur Mer, France, 18-23
    • Nordstrom K (2003) The replicon theory 40 years: an EMBO workshop held January in Villefranche sur Mer, France, 18-23. Plasmid 49: 269-280
    • (2003) Plasmid , vol.49 , pp. 269-280
    • Nordstrom, K.1
  • 35
    • 0033214032 scopus 로고    scopus 로고
    • Knot what we thought before: The twisted story of replication
    • Postow L, Peter BJ, Cozzarelli NB (1999) Knot what we thought before: the twisted story of replication. BioEssays 21: 805-808
    • (1999) BioEssays , vol.21 , pp. 805-808
    • Postow, L.1    Peter, B.J.2    Cozzarelli, N.B.3
  • 38
    • 0032509213 scopus 로고    scopus 로고
    • DnaB helicase is unable to dissociate RNA-DNA hybrids - Its implication in the polar pausing of replication forks at ColE1 origins
    • Santamaría D, delaCueva G, Martínez-Robles ML, Krimer DB, Hernández P, Schvartzman JB (1998) DnaB helicase is unable to dissociate RNA-DNA hybrids - Its implication in the polar pausing of replication forks at ColE1 origins. J Biol Chem 273: 33386-33396
    • (1998) J. Biol. Chem. , vol.273 , pp. 33386-33396
    • Santamaría, D.1    delaCueva, G.2    Martínez-Robles, M.L.3    Krimer, D.B.4    Hernández, P.5    Schvartzman, J.B.6
  • 40
    • 0041853574 scopus 로고    scopus 로고
    • Bacterial chromosome dynamics
    • Sherratt DJ (2003) Bacterial chromosome dynamics. Science 301: 780-785
    • (2003) Science , vol.301 , pp. 780-785
    • Sherratt, D.J.1
  • 41
    • 0023644793 scopus 로고
    • Increased production of a knotted form of plasmid pBR322 DNA in Escherichia coli DNA topoisomerase mutants
    • Shishido K, Komiyama M, Ikawa S (1987) Increased production of a knotted form of plasmid pBR322 DNA in Escherichia coli DNA topoisomerase mutants. J Mol Biol 195: 215-218
    • (1987) J. Mol. Biol. , vol.195 , pp. 215-218
    • Shishido, K.1    Komiyama, M.2    Ikawa, S.3
  • 42
    • 0024791187 scopus 로고
    • The presence of the region on pBR322 that encodes resistance to tetracycline is responsible for high levels of plasmid DNA knotting in Escherichia coli DNA topoisomerase I deletion mutant
    • Shishido K, Ishii S, Komiyaba N (1989) The presence of the region on pBR322 that encodes resistance to tetracycline is responsible for high levels of plasmid DNA knotting in Escherichia coli DNA topoisomerase I deletion mutant. Nucleic Acids Res 17: 9749-9759
    • (1989) Nucleic Acids Res. , vol.17 , pp. 9749-9759
    • Shishido, K.1    Ishii, S.2    Komiyaba, N.3
  • 44
    • 0037178740 scopus 로고    scopus 로고
    • Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects
    • Sogo JM, Lopes M, Foiani M (2002) Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects. Science 297: 599-602
    • (2002) Science , vol.297 , pp. 599-602
    • Sogo, J.M.1    Lopes, M.2    Foiani, M.3
  • 45
    • 16344389522 scopus 로고    scopus 로고
    • Topoisomerases
    • London: Nature Publishing Group. www.ehgonline.net
    • Stasiak A (2003) Topoisomerases. Encyclopedia of the Human Genome. London: Nature Publishing Group. www.ehgonline.net
    • (2003) Encyclopedia of the Human Genome
    • Stasiak, A.1
  • 47
    • 1542501878 scopus 로고    scopus 로고
    • Asymmetric removal of supercoils suggests how topoisomerase II simplifies DNA topology
    • Trigueros S, Salceda J, Bermúdez I, Fernández X, Roca J (2004) Asymmetric removal of supercoils suggests how topoisomerase II simplifies DNA topology. J Mol Biol 335: 723-731
    • (2004) J. Mol. Biol. , vol.335 , pp. 723-731
    • Trigueros, S.1    Salceda, J.2    Bermúdez, I.3    Fernández, X.4    Roca, J.5
  • 48
    • 0001436335 scopus 로고
    • Unlinking of DNA by topoisomerases during DNA replication
    • Lilley DMJ, Eckstein F (eds) 115-142. Berlin, Germany: Springer
    • Ullsperger C, Vologodskii AA, Cozzarelli NR (1995) Unlinking of DNA by topoisomerases during DNA replication. In Nucleic Acids and Molecular Biology, Lilley DMJ, Eckstein F (eds) 115-142. Berlin, Germany: Springer
    • (1995) Nucleic Acids and Molecular Biology
    • Ullsperger, C.1    Vologodskii, A.A.2    Cozzarelli, N.R.3
  • 52
    • 0015222656 scopus 로고
    • Interaction between DNA and an Escherichia coli protein w
    • Wang JC (1971) Interaction between DNA and an Escherichia coli protein w. J Mol Biol 55: 523-534
    • (1971) J. Mol. Biol. , vol.55 , pp. 523-534
    • Wang, J.C.1
  • 53
    • 0036085460 scopus 로고    scopus 로고
    • Cellular roles of DNA topoisomerases: A molecular perspective
    • Wang JC (2002) Cellular roles of DNA topoisomerases: a molecular perspective. Nat Rev Mol Cell Biol 3: 430-440
    • (2002) Nat. Rev. Mol. Cell Biol. , vol.3 , pp. 430-440
    • Wang, J.C.1
  • 54
    • 0024279845 scopus 로고
    • Transcription generates positively and negatively supercoiled domains in the template
    • Wu HY, Shyy S, Wang JC, Liu LF (1988) Transcription generates positively and negatively supercoiled domains in the template. Cell 53: 433-440
    • (1988) Cell , vol.53 , pp. 433-440
    • Wu, H.Y.1    Shyy, S.2    Wang, J.C.3    Liu, L.F.4
  • 55
    • 0028858007 scopus 로고
    • Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli
    • Zechiedrich EL, Cozzarelli NR (1995) Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli. Genes Dev 9: 2859-2869
    • (1995) Genes Dev. , vol.9 , pp. 2859-2869
    • Zechiedrich, E.L.1    Cozzarelli, N.R.2
  • 56
    • 0030771373 scopus 로고    scopus 로고
    • Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli
    • Zechiedrich EL, Khodursky AB, Cozzarelli NR (1997) Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli. Genes Dev 11: 2580-2592
    • (1997) Genes Dev. , vol.11 , pp. 2580-2592
    • Zechiedrich, E.L.1    Khodursky, A.B.2    Cozzarelli, N.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.