메뉴 건너뛰기




Volumn 105, Issue 19, 2008, Pages 6852-6857

Regression supports two mechanisms of fork processing in phage T4

Author keywords

2D gel electrophoresis; DNA replication; Recombination; Restart

Indexed keywords

ADENOSINE TRIPHOSPHATASE; EXONUCLEASE; GENE PRODUCT; PROTEIN ENDOVII; AMSACRINE; DEOXYRIBONUCLEASE; ENDODEOXYRIBONUCLEASE VII; HYDROXYUREA; VIRUS PROTEIN;

EID: 44349176520     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0711999105     Document Type: Article
Times cited : (26)

References (45)
  • 1
    • 0036844340 scopus 로고    scopus 로고
    • Recombinational repair and restart of damaged replication forks
    • McGlynn P, Lloyd RG (2002) Recombinational repair and restart of damaged replication forks. Nat Rev Mol Cell Biol 3:859-870.
    • (2002) Nat Rev Mol Cell Biol , vol.3 , pp. 859-870
    • McGlynn, P.1    Lloyd, R.G.2
  • 2
    • 0032214653 scopus 로고    scopus 로고
    • Bacteriophage T4 initiates bidirectional DNA replication through a two-step process
    • Belanger K, Kreuzer KN (1998) Bacteriophage T4 initiates bidirectional DNA replication through a two-step process. Mol Cell 2:693-701.
    • (1998) Mol Cell , vol.2 , pp. 693-701
    • Belanger, K.1    Kreuzer, K.N.2
  • 3
    • 0031567150 scopus 로고    scopus 로고
    • RNA-DNA hybrid formation at a bacteriophage T4 replication origin
    • Carles-Kinch K, Kreuzer KN (1997) RNA-DNA hybrid formation at a bacteriophage T4 replication origin. J Mol Biol 266:915-926.
    • (1997) J Mol Biol , vol.266 , pp. 915-926
    • Carles-Kinch, K.1    Kreuzer, K.N.2
  • 4
    • 0035102131 scopus 로고    scopus 로고
    • Bacteriophage T4 proteins replicate plasmids with a preformed R Loop at the T4 ori(uvsY) replication origin in vitro
    • Nossal NG, Dudas KC, Kreuzer KN (2001) Bacteriophage T4 proteins replicate plasmids with a preformed R Loop at the T4 ori(uvsY) replication origin in vitro. Mol Cell 7:31-41.
    • (2001) Mol Cell , vol.7 , pp. 31-41
    • Nossal, N.G.1    Dudas, K.C.2    Kreuzer, K.N.3
  • 5
    • 20444379976 scopus 로고    scopus 로고
    • Bacteriophage T4 helicase loader protein gp59 functions as gatekeeper in origin-dependent replication in vivo
    • Dudas KC, Kreuzer KN (2005) Bacteriophage T4 helicase loader protein gp59 functions as gatekeeper in origin-dependent replication in vivo. J Biol Chem 280:21561-21569.
    • (2005) J Biol Chem , vol.280 , pp. 21561-21569
    • Dudas, K.C.1    Kreuzer, K.N.2
  • 6
    • 14044254854 scopus 로고    scopus 로고
    • Interaction between the T4 helicase-loading protein (gp59) and the DNA polymerase (gp43): A locking mechanism to delay replication during replisome assembly
    • Xi J, et al. (2005) Interaction between the T4 helicase-loading protein (gp59) and the DNA polymerase (gp43): A locking mechanism to delay replication during replisome assembly. Biochemistry 44:2305-2318.
    • (2005) Biochemistry , vol.44 , pp. 2305-2318
    • Xi, J.1
  • 7
    • 0002044374 scopus 로고
    • Relationship of T4 DNA replication and recombination
    • eds Mathews CK, Kutter EM, Mosig G, Berget PB American Society for Microbiology, Washington, DC, pp
    • Mosig G (1983) Relationship of T4 DNA replication and recombination. Bacteriophage T4, eds Mathews CK, Kutter EM, Mosig G, Berget PB (American Society for Microbiology, Washington, DC), pp 120-130.
    • (1983) Bacteriophage T4 , pp. 120-130
    • Mosig, G.1
  • 8
    • 0019791254 scopus 로고
    • Membrane-associated DNase activity controlled by genes 46 and 47 of bacteriophage T4D and elevated DNase activity associated with the T4 das mutation
    • Mickelson C, Wiberg J (1981) Membrane-associated DNase activity controlled by genes 46 and 47 of bacteriophage T4D and elevated DNase activity associated with the T4 das mutation. J Virol 40:65-77.
    • (1981) J Virol , vol.40 , pp. 65-77
    • Mickelson, C.1    Wiberg, J.2
  • 9
    • 0035695023 scopus 로고    scopus 로고
    • Recombination at double-strand breaks and DNA ends: Conserved mechanisms from phage to humans
    • Cromie GA, Connelly JC, Leach DRF (2001) Recombination at double-strand breaks and DNA ends: Conserved mechanisms from phage to humans. Mol Cell 8:1163-1174.
    • (2001) Mol Cell , vol.8 , pp. 1163-1174
    • Cromie, G.A.1    Connelly, J.C.2    Leach, D.R.F.3
  • 10
    • 0030793388 scopus 로고    scopus 로고
    • Characterization of an amino-terminal fragment of the bacteriophage T4 uvsY recombination protein
    • Yassa D, Chou K, Morrical S (1997) Characterization of an amino-terminal fragment of the bacteriophage T4 uvsY recombination protein. Biochimie 79:275-285.
    • (1997) Biochimie , vol.79 , pp. 275-285
    • Yassa, D.1    Chou, K.2    Morrical, S.3
  • 11
    • 0029829242 scopus 로고    scopus 로고
    • The gene 59 protein of bacteriophage T4. Characterization of protein-protein interactions with gene 32 protein, the T4 single-stranded DNA binding protein
    • Morrical SW, Beernink HTH, Dash A, Hempstead K (1996) The gene 59 protein of bacteriophage T4. Characterization of protein-protein interactions with gene 32 protein, the T4 single-stranded DNA binding protein. J Biol Chem 271:20198-20207.
    • (1996) J Biol Chem , vol.271 , pp. 20198-20207
    • Morrical, S.W.1    Beernink, H.T.H.2    Dash, A.3    Hempstead, K.4
  • 12
    • 0020146223 scopus 로고
    • T4 endonuclease VII cleaves Holliday structures
    • Mizuuchi K, Kemper B, Hays J, Weisberg R (1982) T4 endonuclease VII cleaves Holliday structures. Cell 29:357-365.
    • (1982) Cell , vol.29 , pp. 357-365
    • Mizuuchi, K.1    Kemper, B.2    Hays, J.3    Weisberg, R.4
  • 13
    • 0017065094 scopus 로고
    • Function of gene 49 of bacteriophage T4. II. Analysis of intracellular development and the structure of very fast-sedimenting DNA
    • Kemper B, Brown D (1976) Function of gene 49 of bacteriophage T4. II. Analysis of intracellular development and the structure of very fast-sedimenting DNA. J Virol 18:1000-1015.
    • (1976) J Virol , vol.18 , pp. 1000-1015
    • Kemper, B.1    Brown, D.2
  • 14
    • 0022599857 scopus 로고
    • Endonuclease VII resolves Y-junctions in branched DNA in vitro
    • Jensch F, Kemper B (1986) Endonuclease VII resolves Y-junctions in branched DNA in vitro. EMBO J 5:181-189.
    • (1986) EMBO J , vol.5 , pp. 181-189
    • Jensch, F.1    Kemper, B.2
  • 15
    • 0037628627 scopus 로고    scopus 로고
    • Endonuclease cleavage of blocked replication forks: An indirect pathway of DNA damage from antitumor drug-topoisomerase complexes
    • Hong G, Kreuzer KN (2003) Endonuclease cleavage of blocked replication forks: An indirect pathway of DNA damage from antitumor drug-topoisomerase complexes. Proc Natl Acad Sci USA 100:5046-5051.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 5046-5051
    • Hong, G.1    Kreuzer, K.N.2
  • 16
    • 0033925785 scopus 로고    scopus 로고
    • Architecture of the replication fork stalled at the 3 end of yeast ribosomal genes
    • Gruber M, Wellinger RE, Sogo JM (2000) Architecture of the replication fork stalled at the 3 end of yeast ribosomal genes. Mol Cell Biol 20:5777-5787.
    • (2000) Mol Cell Biol , vol.20 , pp. 5777-5787
    • Gruber, M.1    Wellinger, R.E.2    Sogo, J.M.3
  • 17
    • 0028851598 scopus 로고
    • Analysis of replication intermediates by two-dimensional agarose gel electrophoresis
    • Friedman K, Brewer B (1995) Analysis of replication intermediates by two-dimensional agarose gel electrophoresis. Methods Enzymol 262:613-627.
    • (1995) Methods Enzymol , vol.262 , pp. 613-627
    • Friedman, K.1    Brewer, B.2
  • 18
    • 0037436108 scopus 로고    scopus 로고
    • DNA damage-induced replication fork regression and processing in Escherichia coli
    • Courcelle J, Donaldson JR, Chow K-H, Courcelle CT (2003) DNA damage-induced replication fork regression and processing in Escherichia coli. Science 299:1064-1067.
    • (2003) Science , vol.299 , pp. 1064-1067
    • Courcelle, J.1    Donaldson, J.R.2    Chow, K.-H.3    Courcelle, C.T.4
  • 19
    • 0035797383 scopus 로고    scopus 로고
    • The DNA replication checkpoint response stabilizes stalled replication forks
    • Lopes M, et al. (2001) The DNA replication checkpoint response stabilizes stalled replication forks. Nature 412:557-561.
    • (2001) Nature , vol.412 , pp. 557-561
    • Lopes, M.1
  • 20
    • 1842733112 scopus 로고    scopus 로고
    • RNase-sensitive DNA modification(s) initiates S. pombe mating-type switching
    • Vengrova S, Dalgaard JZ (2004) RNase-sensitive DNA modification(s) initiates S. pombe mating-type switching. Genes Dev 18:794-804.
    • (2004) Genes Dev , vol.18 , pp. 794-804
    • Vengrova, S.1    Dalgaard, J.Z.2
  • 21
    • 34547095273 scopus 로고    scopus 로고
    • Replication fork reversal occurs spontaneously after digestion but is constrained in supercoiled domains
    • Fierro-Fernandez M, Hernandez P, Krimer DB, Schvartzman JB (2007) Replication fork reversal occurs spontaneously after digestion but is constrained in supercoiled domains. J Biol Chem 282:18190-18196.
    • (2007) J Biol Chem , vol.282 , pp. 18190-18196
    • Fierro-Fernandez, M.1    Hernandez, P.2    Krimer, D.B.3    Schvartzman, J.B.4
  • 22
    • 0025863843 scopus 로고
    • Unidirectional replication as visualized by two-dimensional agarose gel electrophoresis
    • Martin-Parras L, Hernandez P, Martinez-Robles ML, Schvartzman JB (1991) Unidirectional replication as visualized by two-dimensional agarose gel electrophoresis. J Mol Biol 220:843-853.
    • (1991) J Mol Biol , vol.220 , pp. 843-853
    • Martin-Parras, L.1    Hernandez, P.2    Martinez-Robles, M.L.3    Schvartzman, J.B.4
  • 23
    • 0017298802 scopus 로고
    • A model for replication repair in mammalian cells
    • Higgins NP, Kato K, Strauss B (1976) A model for replication repair in mammalian cells. J Mol Biol 101:417-425.
    • (1976) J Mol Biol , vol.101 , pp. 417-425
    • Higgins, N.P.1    Kato, K.2    Strauss, B.3
  • 24
    • 0035076633 scopus 로고    scopus 로고
    • UvsW protein regulates bacteriophage T4 origin-dependent replication by unwinding R-loops
    • Dudas KC, Kreuzer KN (2001) UvsW protein regulates bacteriophage T4 origin-dependent replication by unwinding R-loops. Mol Cell Biol 21:2706-2715.
    • (2001) Mol Cell Biol , vol.21 , pp. 2706-2715
    • Dudas, K.C.1    Kreuzer, K.N.2
  • 25
    • 33750472654 scopus 로고    scopus 로고
    • Deregulated replication licensing causes DNA fragmentation consistent with head-to-tail fork collision
    • Davidson IF, Li A, Blow JJ (2006) Deregulated replication licensing causes DNA fragmentation consistent with head-to-tail fork collision. Mol Cell 24:433-443.
    • (2006) Mol Cell , vol.24 , pp. 433-443
    • Davidson, I.F.1    Li, A.2    Blow, J.J.3
  • 26
    • 0035902585 scopus 로고    scopus 로고
    • Single-strand interruptions in replicating chromosomes cause double-strand breaks
    • Kuzminov A (2001) Single-strand interruptions in replicating chromosomes cause double-strand breaks. Proc Natl Acad Sci USA 98:8241-8246.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 8241-8246
    • Kuzminov, A.1
  • 27
    • 0031025093 scopus 로고    scopus 로고
    • DNA double-strand breaks caused by replication arrest
    • Michel B, Ehrlich SD, Uzest M (1997) DNA double-strand breaks caused by replication arrest. EMBO J 16:430-438.
    • (1997) EMBO J , vol.16 , pp. 430-438
    • Michel, B.1    Ehrlich, S.D.2    Uzest, M.3
  • 28
    • 0033710452 scopus 로고    scopus 로고
    • RuvABC-dependent double-strand breaks in dnaBts mutants require RecA
    • Seigneur M, Ehrlich SD, Michel B (2000) RuvABC-dependent double-strand breaks in dnaBts mutants require RecA. Mol Microbiol 38:565-574.
    • (2000) Mol Microbiol , vol.38 , pp. 565-574
    • Seigneur, M.1    Ehrlich, S.D.2    Michel, B.3
  • 29
    • 0028839302 scopus 로고
    • Recombination-dependent DNA replication stimulated by double-strand breaks in bacteriophage T4
    • Kreuzer K, Saunders M, Weislo L, Kreuzer H (1995) Recombination-dependent DNA replication stimulated by double-strand breaks in bacteriophage T4. J Bacteriol 177:6844-6853.
    • (1995) J Bacteriol , vol.177 , pp. 6844-6853
    • Kreuzer, K.1    Saunders, M.2    Weislo, L.3    Kreuzer, H.4
  • 30
    • 0035104264 scopus 로고    scopus 로고
    • Two types of recombination hotspots in bacteriophage T4: One requires DNA damage and a replication origin and the other does not
    • Doan PL, Belanger KG, Kreuzer KN (2001) Two types of recombination hotspots in bacteriophage T4: One requires DNA damage and a replication origin and the other does not. Genetics 157:1077-1087.
    • (2001) Genetics , vol.157 , pp. 1077-1087
    • Doan, P.L.1    Belanger, K.G.2    Kreuzer, K.N.3
  • 31
    • 0026343712 scopus 로고
    • Bypass of a primase requirement for bacteriophage T4 DNA replication in vivo by a recombination enzyme, endonuclease VII
    • Mosig G, Luder A, Ernst A, Canan N (1991) Bypass of a primase requirement for bacteriophage T4 DNA replication in vivo by a recombination enzyme, endonuclease VII. New Biologist 3:1195-1205.
    • (1991) New Biologist , vol.3 , pp. 1195-1205
    • Mosig, G.1    Luder, A.2    Ernst, A.3    Canan, N.4
  • 32
    • 0033970936 scopus 로고    scopus 로고
    • An antitumor drug-induced topoisomerase cleavage complex blocks a bacteriophage T4 replication fork in vivo
    • Hong G, Kreuzer KN (2000) An antitumor drug-induced topoisomerase cleavage complex blocks a bacteriophage T4 replication fork in vivo. Mol Cell Biol 20:594-603.
    • (2000) Mol Cell Biol , vol.20 , pp. 594-603
    • Hong, G.1    Kreuzer, K.N.2
  • 33
    • 0142027841 scopus 로고    scopus 로고
    • Swi1 prevents replication fork collapse and controls checkpoint kinase Cds1
    • Noguchi E, Noguchi C, Du L-L, Russell P (2003) Swi1 prevents replication fork collapse and controls checkpoint kinase Cds1. Mol Cell Biol 23:7861-7874.
    • (2003) Mol Cell Biol , vol.23 , pp. 7861-7874
    • Noguchi, E.1    Noguchi, C.2    Du, L.-L.3    Russell, P.4
  • 34
    • 0035834755 scopus 로고    scopus 로고
    • Action of RuvAB at replication fork structures
    • McGlynn P, Lloyd RG (2001) Action of RuvAB at replication fork structures. J Biol Chem 276:41938-41944.
    • (2001) J Biol Chem , vol.276 , pp. 41938-41944
    • McGlynn, P.1    Lloyd, R.G.2
  • 35
    • 33749411110 scopus 로고    scopus 로고
    • RuvABC is required to resolve Holliday junctions that accumulate following replication on damaged templates in Escherichia coli
    • Donaldson JR, Courcelle CT, Courcelle J (2006) RuvABC is required to resolve Holliday junctions that accumulate following replication on damaged templates in Escherichia coli. J Biol Chem 281:28811-28821.
    • (2006) J Biol Chem , vol.281 , pp. 28811-28821
    • Donaldson, J.R.1    Courcelle, C.T.2    Courcelle, J.3
  • 36
    • 0030940299 scopus 로고    scopus 로고
    • Sequence specificity and biochemical characterization of the RusA Holliday junction resolvase of Escherichia coli
    • Chan SN, Harris L, Bolt EL, Whitby MC, Lloyd RG (1997) Sequence specificity and biochemical characterization of the RusA Holliday junction resolvase of Escherichia coli. J Biol Chem 272:14873-14882.
    • (1997) J Biol Chem , vol.272 , pp. 14873-14882
    • Chan, S.N.1    Harris, L.2    Bolt, E.L.3    Whitby, M.C.4    Lloyd, R.G.5
  • 37
    • 0027376095 scopus 로고
    • Resolution of Holliday junctions by RuvC resolvase: Cleavage specificity and DNA distortion
    • Bennett R, Dunderdale H, West S (1993) Resolution of Holliday junctions by RuvC resolvase: Cleavage specificity and DNA distortion. Cell 74:1021-1031.
    • (1993) Cell , vol.74 , pp. 1021-1031
    • Bennett, R.1    Dunderdale, H.2    West, S.3
  • 38
  • 39
    • 34247251492 scopus 로고    scopus 로고
    • Mus81 cleavage of Holliday junctions: A failsafe for processing meiotic recombination intermediates?
    • Gaskell LJ, Osman F, Gilbert RJC, Whitby MC (2007) Mus81 cleavage of Holliday junctions: A failsafe for processing meiotic recombination intermediates? EMBO J 26:1891-1901.
    • (2007) EMBO J , vol.26 , pp. 1891-1901
    • Gaskell, L.J.1    Osman, F.2    Gilbert, R.J.C.3    Whitby, M.C.4
  • 40
    • 0035902508 scopus 로고    scopus 로고
    • Mediator proteins orchestrate enzyme-ssDNA assembly during T4 recombination-dependent DNA replication and repair
    • Bleuit JS, et al. (2001) Mediator proteins orchestrate enzyme-ssDNA assembly during T4 recombination-dependent DNA replication and repair. Proc Natl Acad Sci USA 98:8298-8305.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 8298-8305
    • Bleuit, J.S.1
  • 41
    • 4544339736 scopus 로고    scopus 로고
    • Replication protein A and the Mre11-Rad50-Nbs1 complex co-localize and interact at sites of stalled replication forks
    • Robison JG, Elliott J, Dixon K, Oakley GG (2004) Replication protein A and the Mre11-Rad50-Nbs1 complex co-localize and interact at sites of stalled replication forks. J Biol Chem 279:34802-34810.
    • (2004) J Biol Chem , vol.279 , pp. 34802-34810
    • Robison, J.G.1    Elliott, J.2    Dixon, K.3    Oakley, G.G.4
  • 42
    • 0023678299 scopus 로고
    • Tertiary initiation of replication in bacteriophage T4. Deletion of the overlapping uvsY promoter/replication origin from the phage genome
    • Kreuzer K, Engman H, Yap W (1988) Tertiary initiation of replication in bacteriophage T4. Deletion of the overlapping uvsY promoter/replication origin from the phage genome. J Biol Chem 263:11348-11357.
    • (1988) J Biol Chem , vol.263 , pp. 11348-11357
    • Kreuzer, K.1    Engman, H.2    Yap, W.3
  • 43
    • 0023758318 scopus 로고
    • The bacteriophage T4 insertion/substitution vector system. A method for introducing site-specific mutations into the virus chromosome
    • Selick H, Kreuzer K, Alberts B (1988) The bacteriophage T4 insertion/substitution vector system. A method for introducing site-specific mutations into the virus chromosome. J Biol Chem 263:11336-11347.
    • (1988) J Biol Chem , vol.263 , pp. 11336-11347
    • Selick, H.1    Kreuzer, K.2    Alberts, B.3
  • 44
    • 0027972512 scopus 로고
    • Improved downward capillary transfer for blotting of DNA and RNA
    • Ming Y, Di X, Gomez-Sanchez E, Gomez-Sanchez C (1994) Improved downward capillary transfer for blotting of DNA and RNA. Biotechniques 16:58-59.
    • (1994) Biotechniques , vol.16 , pp. 58-59
    • Ming, Y.1    Di, X.2    Gomez-Sanchez, E.3    Gomez-Sanchez, C.4
  • 45
    • 0029888199 scopus 로고    scopus 로고
    • Bacteriophage T4 mutants hypersensitive to an antitumor agent that induces topoisomerase-DNA cleavage complexes
    • Woodworth DL, Kreuzer KN (1996) Bacteriophage T4 mutants hypersensitive to an antitumor agent that induces topoisomerase-DNA cleavage complexes. Genetics 143:1081-1090.
    • (1996) Genetics , vol.143 , pp. 1081-1090
    • Woodworth, D.L.1    Kreuzer, K.N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.