메뉴 건너뛰기




Volumn 37, Issue 15, 2009, Pages 5126-5137

Interplay of DNA supercoiling and catenation during the segregation of sister duplexes

Author keywords

[No Author keywords available]

Indexed keywords

CATENANE; CIRCULAR DNA; DNA TOPOISOMERASE (ATP HYDROLYSING); DNA TOPOISOMERASE IV; DOUBLE STRANDED DNA;

EID: 69849112239     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp530     Document Type: Article
Times cited : (37)

References (57)
  • 2
    • 3142665836 scopus 로고    scopus 로고
    • A topological view of the replicon
    • Schvartzman,J.B. and Stasiak,A. (2004) A topological view of the replicon. EMBO Rep., 5, 256-261.
    • (2004) EMBO Rep , vol.5 , pp. 256-261
    • Schvartzman, J.B.1    Stasiak, A.2
  • 3
    • 0032189275 scopus 로고    scopus 로고
    • Levine,C., Hiasa,H. and Marians,K.J. (1998) DNA gyrase and topoisomerase IV: Biochemical activities, physiological roles during chromosome replication, and drug sensitivities. BBA Gene Struct. Express., 1400, 29-43.
    • Levine,C., Hiasa,H. and Marians,K.J. (1998) DNA gyrase and topoisomerase IV: Biochemical activities, physiological roles during chromosome replication, and drug sensitivities. BBA Gene Struct. Express., 1400, 29-43.
  • 5
    • 41149121779 scopus 로고    scopus 로고
    • Independent positioning and action of Escherichia coli replisomes in live cells
    • Reyes-Lamothe,R., Possoz,C., Danilova,O. and Sherratt,D.J. (2008) Independent positioning and action of Escherichia coli replisomes in live cells. Cell, 133, 90-102.
    • (2008) Cell , vol.133 , pp. 90-102
    • Reyes-Lamothe, R.1    Possoz, C.2    Danilova, O.3    Sherratt, D.J.4
  • 6
    • 51149119105 scopus 로고    scopus 로고
    • Modulation of Escherichia coli sister chromosome cohesion by topoisomerase IV
    • Wang,X., Reyes-Lamothe,R. and Sherratt,D.J. (2008) Modulation of Escherichia coli sister chromosome cohesion by topoisomerase IV. Genes Dev., 22, 2426-2433.
    • (2008) Genes Dev , vol.22 , pp. 2426-2433
    • Wang, X.1    Reyes-Lamothe, R.2    Sherratt, D.J.3
  • 7
    • 0035890272 scopus 로고    scopus 로고
    • Topoisomerase II can unlink replicating DNA by precatenane removal
    • Lucas,I., Germe,T., Chevrier-Miller,M. and Hyrien,O. (2001) Topoisomerase II can unlink replicating DNA by precatenane removal. EMBO J., 20, 6509-6519.
    • (2001) EMBO J , vol.20 , pp. 6509-6519
    • Lucas, I.1    Germe, T.2    Chevrier-Miller, M.3    Hyrien, O.4
  • 8
    • 0018958519 scopus 로고
    • Terminal stages of SV40 DNA replication proceed via multiply intertwined catenated dimers
    • Sundin,O. and Varshavsky,A. (1980) Terminal stages of SV40 DNA replication proceed via multiply intertwined catenated dimers. Cell 21, 103-114.
    • (1980) Cell , vol.21 , pp. 103-114
    • Sundin, O.1    Varshavsky, A.2
  • 9
    • 0019417775 scopus 로고
    • Arrest of segregation leads to accumulation of highly intertwined catenated dimers dissection of the final stages of SV40 DNA replication
    • Sundin,O. and Varshavsky,A. (1981) Arrest of segregation leads to accumulation of highly intertwined catenated dimers dissection of the final stages of SV40 DNA replication. Cell, 25, 659-669.
    • (1981) Cell , vol.25 , pp. 659-669
    • Sundin, O.1    Varshavsky, A.2
  • 10
    • 0026712869 scopus 로고
    • The role of Topoisomerase-IV in partitioning bacterial replicons and the structure of catenated intermediates in DNA replication
    • Adams,D.E., Shekhtman,E.M., Zechiedrich,E.L., Schmid,M.B. and Cozzarelli,N.R. (1992) The role of Topoisomerase-IV in partitioning bacterial replicons and the structure of catenated intermediates in DNA replication. Cell, 71, 277-288.
    • (1992) Cell , vol.71 , pp. 277-288
    • Adams, D.E.1    Shekhtman, E.M.2    Zechiedrich, E.L.3    Schmid, M.B.4    Cozzarelli, N.R.5
  • 11
    • 0029831664 scopus 로고    scopus 로고
    • Two distinct modes of strand unlinking during theta-type DNA replication
    • Hiasa,H. and Marians,K.J. (1996) Two distinct modes of strand unlinking during theta-type DNA replication. J. Biol. Chem., 271, 21529-21535.
    • (1996) J. Biol. Chem , vol.271 , pp. 21529-21535
    • Hiasa, H.1    Marians, K.J.2
  • 12
    • 0027171678 scopus 로고
    • Decatenation activity of Topoisomerase-IV during oriC and pBR322 DNA replication invitro
    • Peng,H. and Marians,K.J. (1993) Decatenation activity of Topoisomerase-IV during oriC and pBR322 DNA replication invitro. Proc. Natl Acad. Sci. USA, 90, 8571-8575.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 8571-8575
    • Peng, H.1    Marians, K.J.2
  • 13
    • 0020034887 scopus 로고
    • Kinetics of minichromosome replication in Escherichia coli B/r
    • Leonard,A.C., Hucul,J.A. and Helmstetter,C.E. (1982) Kinetics of minichromosome replication in Escherichia coli B/r. J. Bacteriol., 149, 499-507.
    • (1982) J. Bacteriol , vol.149 , pp. 499-507
    • Leonard, A.C.1    Hucul, J.A.2    Helmstetter, C.E.3
  • 14
    • 30944441520 scopus 로고    scopus 로고
    • Topoisomerase II-DNA complexes trapped by ICRF-193 perturb chromatin structure
    • Germe,T. and Hyrien,O. (2005) Topoisomerase II-DNA complexes trapped by ICRF-193 perturb chromatin structure. EMBO Rep., 6, 729-735.
    • (2005) EMBO Rep , vol.6 , pp. 729-735
    • Germe, T.1    Hyrien, O.2
  • 15
    • 0022111794 scopus 로고
    • The stereostructure of knots and catenanes produced by phage lambda integrative recombination: Implications for mechanism and DNA structure
    • Spengler,S.J., Stasiak,A. and Cozzarelli,N.R. (1985) The stereostructure of knots and catenanes produced by phage lambda integrative recombination: Implications for mechanism and DNA structure. Cell, 42, 325-334.
    • (1985) Cell , vol.42 , pp. 325-334
    • Spengler, S.J.1    Stasiak, A.2    Cozzarelli, N.R.3
  • 16
    • 0030771373 scopus 로고    scopus 로고
    • Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli
    • Zechiedrich,E.L., Khodursky,A.B. and Cozzarelli,N.R. (1997) Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli. Genes Dev., 11, 2580-2592.
    • (1997) Genes Dev , vol.11 , pp. 2580-2592
    • Zechiedrich, E.L.1    Khodursky, A.B.2    Cozzarelli, N.R.3
  • 17
    • 0031588905 scopus 로고    scopus 로고
    • The effect of ionic conditions on the conformations of supercoiled DNA. II. Equilibrium catenation
    • Rybenkov,V.V., Vologodskii,A.V. and Cozzarelli,N.R. (1997) The effect of ionic conditions on the conformations of supercoiled DNA. II. Equilibrium catenation. J. Mol. Biol., 267, 312-323.
    • (1997) J. Mol. Biol , vol.267 , pp. 312-323
    • Rybenkov, V.V.1    Vologodskii, A.V.2    Cozzarelli, N.R.3
  • 20
    • 0027171352 scopus 로고
    • Monte carlo analysis of the conformation of DNA catenanes
    • Vologodskii,A.V. and Cozzarelli,N.R. (1993) Monte carlo analysis of the conformation of DNA catenanes. J. Mol. Biol., 232, 1130-1140.
    • (1993) J. Mol. Biol , vol.232 , pp. 1130-1140
    • Vologodskii, A.V.1    Cozzarelli, N.R.2
  • 21
    • 0028049305 scopus 로고
    • The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo
    • Bednar,J., Furrer,P., Stasiak,A., Dubochet,J., Egelman,E.H. and Bates,A.D. (1994) The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo. J. Mol. Biol., 235, 825-847.
    • (1994) J. Mol. Biol , vol.235 , pp. 825-847
    • Bednar, J.1    Furrer, P.2    Stasiak, A.3    Dubochet, J.4    Egelman, E.H.5    Bates, A.D.6
  • 22
    • 0027279063 scopus 로고
    • Probability of DNA knotting and the effective diameter of the DNA double helix
    • Rybenkov,V.V., Cozzarelli,N.R. and Vologodskii,A.V. (1993) Probability of DNA knotting and the effective diameter of the DNA double helix. Proc. Natl Acad. Sci. USA, 90, 5307-5311.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 5307-5311
    • Rybenkov, V.V.1    Cozzarelli, N.R.2    Vologodskii, A.V.3
  • 26
    • 0028869662 scopus 로고
    • Monte Carlo simulations of supercoiling free energies for unknotted and trefoil knotted DNAs
    • Gebe,J.A., Allison,S.A., Clendenning,J.B. and Schurr,J.M. (1995) Monte Carlo simulations of supercoiling free energies for unknotted and trefoil knotted DNAs. Biophys. J., 68, 619-633.
    • (1995) Biophys. J , vol.68 , pp. 619-633
    • Gebe, J.A.1    Allison, S.A.2    Clendenning, J.B.3    Schurr, J.M.4
  • 27
    • 0031835961 scopus 로고    scopus 로고
    • Geometry and physics of catenanes applied to the study of DNA replication
    • Laurie,B., Katritch,V., Sogo,J., Koller,T., Dubochet,J. and Stasiak,A. (1998) Geometry and physics of catenanes applied to the study of DNA replication. Biophys. J., 74, 2815-2822.
    • (1998) Biophys. J , vol.74 , pp. 2815-2822
    • Laurie, B.1    Katritch, V.2    Sogo, J.3    Koller, T.4    Dubochet, J.5    Stasiak, A.6
  • 29
    • 0025647116 scopus 로고
    • Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers
    • Zechiedrich,E.L. and Osheroff,N. (1990) Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers. EMBO J., 9, 4555-4562.
    • (1990) EMBO J , vol.9 , pp. 4555-4562
    • Zechiedrich, E.L.1    Osheroff, N.2
  • 30
    • 0032509213 scopus 로고    scopus 로고
    • DnaB helicase is unable to dissociate RNA-DNA hybrids - its implication in the polar pausing of replication forks at ColE1 origins
    • Santamaría,D., delaCueva,G., Martínez-Robles,M.L., Krimer,D.B., Hernández,P. and Schvartzman,J.B. (1998) DnaB helicase is unable to dissociate RNA-DNA hybrids - its implication in the polar pausing of replication forks at ColE1 origins. J. Biol. Chem., 273, 33386-33396.
    • (1998) J. Biol. Chem , vol.273 , pp. 33386-33396
    • Santamaría, D.1    delaCueva, G.2    Martínez-Robles, M.L.3    Krimer, D.B.4    Hernández, P.5    Schvartzman, J.B.6
  • 31
    • 34547095273 scopus 로고    scopus 로고
    • Replication fork reversal occurs spontaneously after digestion but is constrained in supercoiled domains
    • Fierro-Fernandez,M., Hernandez,P., Krimer,D.B. and Schvartzman,J.B. (2007) Replication fork reversal occurs spontaneously after digestion but is constrained in supercoiled domains. J. Biol. Chem., 282 18190-18196.
    • (2007) J. Biol. Chem , vol.282 , pp. 18190-18196
    • Fierro-Fernandez, M.1    Hernandez, P.2    Krimer, D.B.3    Schvartzman, J.B.4
  • 34
    • 0023906965 scopus 로고
    • Quinolone-resistant mutations of the gyrA gene of Escherichia coli
    • Yoshida,H., Kojima,T., Yamagishi,J. and Nakamura,S. (1988) Quinolone-resistant mutations of the gyrA gene of Escherichia coli. Mol. Gen. Genet., 211, 1-7.
    • (1988) Mol. Gen. Genet , vol.211 , pp. 1-7
    • Yoshida, H.1    Kojima, T.2    Yamagishi, J.3    Nakamura, S.4
  • 35
    • 0000098197 scopus 로고
    • Analysis of replication intermediates by two-dimensional agarose gel electrophoresis
    • Brewer,B.J., Sena,E.P. and Fangman,W.L. (1988) Analysis of replication intermediates by two-dimensional agarose gel electrophoresis. Cancer Cells, 6, 229-234.
    • (1988) Cancer Cells , vol.6 , pp. 229-234
    • Brewer, B.J.1    Sena, E.P.2    Fangman, W.L.3
  • 37
    • 44949208460 scopus 로고    scopus 로고
    • Topoisomerase II inactivation prevents the completion of DNA replication in budding yeast
    • Baxter,J. and Diffley,J.F. (2008) Topoisomerase II inactivation prevents the completion of DNA replication in budding yeast. Mol. Cell, 30, 790-802.
    • (2008) Mol. Cell , vol.30 , pp. 790-802
    • Baxter, J.1    Diffley, J.F.2
  • 38
    • 34547888748 scopus 로고    scopus 로고
    • Discovery of natural nicking endonucleases Nb.BsrDI and Nb.BtsI and engineering of top-strand nicking variants from BsrDI and BtsI
    • Xu,S.Y., Zhu,Z., Zhang,P., Chan,S.H., Samuelson,J.C., Xiao,J., Ingalls,D. and Wilson,G.G. (2007) Discovery of natural nicking endonucleases Nb.BsrDI and Nb.BtsI and engineering of top-strand nicking variants from BsrDI and BtsI. Nucleic Acids Res., 35, 4608-4618.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4608-4618
    • Xu, S.Y.1    Zhu, Z.2    Zhang, P.3    Chan, S.H.4    Samuelson, J.C.5    Xiao, J.6    Ingalls, D.7    Wilson, G.G.8
  • 39
    • 0036965964 scopus 로고    scopus 로고
    • DNA knotting caused by head-on collision of transcription and replication
    • Olavarrieta,L., Hernández,P., Krimer,D.B. and Schvartzman,J.B. (2002) DNA knotting caused by head-on collision of transcription and replication. J. Mol. Biol., 322, 1-6.
    • (2002) J. Mol. Biol , vol.322 , pp. 1-6
    • Olavarrieta, L.1    Hernández, P.2    Krimer, D.B.3    Schvartzman, J.B.4
  • 42
    • 4243590668 scopus 로고    scopus 로고
    • Coupling of intramolecular and intermolecular linkage complexity of two DNAs
    • Marko,J.F. (1999) Coupling of intramolecular and intermolecular linkage complexity of two DNAs. Phys. Rev. E, 59, 900-912.
    • (1999) Phys. Rev. E , vol.59 , pp. 900-912
    • Marko, J.F.1
  • 44
    • 36348982154 scopus 로고    scopus 로고
    • DNA is more negatively supercoiled in bacterial plasmids than in minichromosomes isolated from budding yeast
    • Mayan-Santos,M.D., Martinez-Robles,M.L., Hernandez,P., Krimer,D. and Schvartzman,J.B. (2007) DNA is more negatively supercoiled in bacterial plasmids than in minichromosomes isolated from budding yeast. Electrophoresis, 28, 3845-3853.
    • (2007) Electrophoresis , vol.28 , pp. 3845-3853
    • Mayan-Santos, M.D.1    Martinez-Robles, M.L.2    Hernandez, P.3    Krimer, D.4    Schvartzman, J.B.5
  • 45
    • 0027933455 scopus 로고
    • Elevated unconstrained supercoiling of plasmid DNA generated by transcription and translation of the tetracycline resistance gene in eubacteria
    • Bowater,R.P., Chen,D. and Lilley,D.M. (1994) Elevated unconstrained supercoiling of plasmid DNA generated by transcription and translation of the tetracycline resistance gene in eubacteria. Biochemistry, 33, 9266-9275.
    • (1994) Biochemistry , vol.33 , pp. 9266-9275
    • Bowater, R.P.1    Chen, D.2    Lilley, D.M.3
  • 46
    • 0023117639 scopus 로고
    • Use of site-specific recombination as a probe of DNA structure and metabolism in vivo
    • Bliska,J.B. and Cozzarelli,N.R. (1987) Use of site-specific recombination as a probe of DNA structure and metabolism in vivo. J. Mol. Biol., 194, 205-218.
    • (1987) J. Mol. Biol , vol.194 , pp. 205-218
    • Bliska, J.B.1    Cozzarelli, N.R.2
  • 47
    • 0024316735 scopus 로고
    • DNA gyrase can supercoil DNA circles as small as 174 base pairs
    • Bates,A.D. and Maxwell,A. (1989) DNA gyrase can supercoil DNA circles as small as 174 base pairs. EMBO J., 8, 1861-1866.
    • (1989) EMBO J , vol.8 , pp. 1861-1866
    • Bates, A.D.1    Maxwell, A.2
  • 48
    • 0029147180 scopus 로고
    • Analysis of the structure of dimeric DNA catenanes by electron microscopy
    • Levene,S.D., Donahue,C., Boles,T.C. and Cozzarelli,N.R. (1995) Analysis of the structure of dimeric DNA catenanes by electron microscopy. Biophys. J., 69, 1036-1045.
    • (1995) Biophys. J , vol.69 , pp. 1036-1045
    • Levene, S.D.1    Donahue, C.2    Boles, T.C.3    Cozzarelli, N.R.4
  • 49
    • 0022457421 scopus 로고
    • Structure of replicating Simian Virus 40 minichromosomes
    • Sogo,J.M., Stahl,H., Koller,T. and Knippers,R. (1986) Structure of replicating Simian Virus 40 minichromosomes. J. Mol. Biol., 189 189-204.
    • (1986) J. Mol. Biol , vol.189 , pp. 189-204
    • Sogo, J.M.1    Stahl, H.2    Koller, T.3    Knippers, R.4
  • 50
    • 0043194014 scopus 로고    scopus 로고
    • Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases
    • Charvin,G., Bensimon,D. and Croquette,V. (2003) Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases. Proc. Natl Acad. Sci. USA, 100, 9820-9825.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 9820-9825
    • Charvin, G.1    Bensimon, D.2    Croquette, V.3
  • 51
    • 0029856729 scopus 로고    scopus 로고
    • Contrasting enzymatic activities of topoisomerase IV and DNA gyrase from Escherichia coli
    • Ullsperger,C. and Cozzarelli,N.R. (1996) Contrasting enzymatic activities of topoisomerase IV and DNA gyrase from Escherichia coli. J. Biol. Chem., 271, 31549-31555.
    • (1996) J. Biol. Chem , vol.271 , pp. 31549-31555
    • Ullsperger, C.1    Cozzarelli, N.R.2
  • 52
    • 50849099115 scopus 로고    scopus 로고
    • DNA supercoiling inhibits DNA knotting
    • Burnier,Y., Dorier,J. and Stasiak,A. (2008) DNA supercoiling inhibits DNA knotting. Nucleic Acids Res., 36, 4956-4963.
    • (2008) Nucleic Acids Res , vol.36 , pp. 4956-4963
    • Burnier, Y.1    Dorier, J.2    Stasiak, A.3
  • 53
    • 0030758268 scopus 로고    scopus 로고
    • Simplification of DNA topology below equilibrium values by type II topoisomerases
    • Rybenkov,V.V., Ullsperger,C., Vologodskii,A.V. and Cozzarelli,N.R. (1997) Simplification of DNA topology below equilibrium values by type II topoisomerases. Science, 277, 690-693.
    • (1997) Science , vol.277 , pp. 690-693
    • Rybenkov, V.V.1    Ullsperger, C.2    Vologodskii, A.V.3    Cozzarelli, N.R.4
  • 56
    • 0036299103 scopus 로고    scopus 로고
    • Computational analysis of the chiral action of type II DNA topoisomerases
    • Klenin,K., Langowski,J. and Vologodskii,A. (2002) Computational analysis of the chiral action of type II DNA topoisomerases. J. Mol. Biol., 320, 359-367.
    • (2002) J. Mol. Biol , vol.320 , pp. 359-367
    • Klenin, K.1    Langowski, J.2    Vologodskii, A.3
  • 57
    • 1542501878 scopus 로고    scopus 로고
    • Asymmetric removal of supercoils suggests how topoisomerase II simplifies DNA topology
    • Trigueros,S., Salceda,J., Bermúdez,I., Fernández,X. and Roca,J. (2004) Asymmetric removal of supercoils suggests how topoisomerase II simplifies DNA topology. J. Mol. Biol., 335, 723-731.
    • (2004) J. Mol. Biol , vol.335 , pp. 723-731
    • Trigueros, S.1    Salceda, J.2    Bermúdez, I.3    Fernández, X.4    Roca, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.