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Volumn 409, Issue , 2006, Pages 477-493

Formation and Processing of Stalled Replication Forks-Utility of Two-Dimensional Agarose Gels

Author keywords

[No Author keywords available]

Indexed keywords

AGAROSE; DNA TOPOISOMERASE; DNA TOPOISOMERASE INHIBITOR; NUCLEOTIDE;

EID: 33745184666     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(05)09028-2     Document Type: Review
Times cited : (10)

References (38)
  • 1
    • 0034650969 scopus 로고    scopus 로고
    • A method for preparing genomic DNA that restrains branch migration of Holliday junctions
    • Allers T., and Lichten M. A method for preparing genomic DNA that restrains branch migration of Holliday junctions. Nucleic Acids Res. 28 (2000) e6
    • (2000) Nucleic Acids Res. , vol.28
    • Allers, T.1    Lichten, M.2
  • 3
    • 0032214653 scopus 로고    scopus 로고
    • Bacteriophage T4 initiates bidirectional DNA replication through a two-step process
    • Belanger K.G., and Kreuzer K.N. Bacteriophage T4 initiates bidirectional DNA replication through a two-step process. Mol. Cell 2 (1998) 693-701
    • (1998) Mol. Cell , vol.2 , pp. 693-701
    • Belanger, K.G.1    Kreuzer, K.N.2
  • 4
    • 0029883307 scopus 로고    scopus 로고
    • Two-dimensional gel analysis of rolling circle replication in the presence and absence of bacteriophage T4 primase
    • Belanger K.G., Mirzayan C., Kreuzer H.E., Alberts B.M., and Kreuzer K.N. Two-dimensional gel analysis of rolling circle replication in the presence and absence of bacteriophage T4 primase. Nucl. Acids Res. 24 (1996) 2166-2175
    • (1996) Nucl. Acids Res. , vol.24 , pp. 2166-2175
    • Belanger, K.G.1    Mirzayan, C.2    Kreuzer, H.E.3    Alberts, B.M.4    Kreuzer, K.N.5
  • 5
    • 0023646792 scopus 로고
    • The localization of replication origins on ARS plasmids in S. cerevisiae
    • Brewer B.J., and Fangman W.L. The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51 (1987) 463-471
    • (1987) Cell , vol.51 , pp. 463-471
    • Brewer, B.J.1    Fangman, W.L.2
  • 6
    • 0024291357 scopus 로고
    • A replication fork barrier at the 3′ end of yeast ribosomal RNA genes
    • Brewer B.J., and Fangman W.L. A replication fork barrier at the 3′ end of yeast ribosomal RNA genes. Cell 55 (1988) 637-643
    • (1988) Cell , vol.55 , pp. 637-643
    • Brewer, B.J.1    Fangman, W.L.2
  • 7
    • 0033032373 scopus 로고    scopus 로고
    • Termination of DNA replication of bacterial and plasmid chromosomes
    • Bussiere D.E., and Bastia D. Termination of DNA replication of bacterial and plasmid chromosomes. Mol. Microbiol. 31 (1999) 1611-1618
    • (1999) Mol. Microbiol. , vol.31 , pp. 1611-1618
    • Bussiere, D.E.1    Bastia, D.2
  • 8
    • 0030890705 scopus 로고    scopus 로고
    • recF and recR are required for the resumption of replication at DNA replication forks in Escherichia coli
    • Courcelle J., Carswell-Crumpton C., and Hanawalt P.C. recF and recR are required for the resumption of replication at DNA replication forks in Escherichia coli. Proc. Natl. Acad. Sci. USA 94 (1997) 3714-3719
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 3714-3719
    • Courcelle, J.1    Carswell-Crumpton, C.2    Hanawalt, P.C.3
  • 9
    • 0032916453 scopus 로고    scopus 로고
    • Recovery of DNA replication in UV-irradiated Escherichia coli requires both excision repair and RecF protein function
    • Courcelle J., Crowley D.J., and Hanawalt P.C. Recovery of DNA replication in UV-irradiated Escherichia coli requires both excision repair and RecF protein function. J. Bacteriol. 181 (1999) 916-922
    • (1999) J. Bacteriol. , vol.181 , pp. 916-922
    • Courcelle, J.1    Crowley, D.J.2    Hanawalt, P.C.3
  • 10
    • 0037436108 scopus 로고    scopus 로고
    • DNA damage-induced replication fork regression and processing in Escherichia coli
    • Courcelle J., Donaldson J.R., Chow K.H., and Courcelle C.T. DNA damage-induced replication fork regression and processing in Escherichia coli. Science 299 (2003) 1064-1067
    • (2003) Science , vol.299 , pp. 1064-1067
    • Courcelle, J.1    Donaldson, J.R.2    Chow, K.H.3    Courcelle, C.T.4
  • 11
    • 0035679232 scopus 로고    scopus 로고
    • Recombinational DNA repair of damaged replication forks in Escherichia coli: Questions
    • Cox M.M. Recombinational DNA repair of damaged replication forks in Escherichia coli: Questions. Annu. Rev. Genet. 35 (2001) 53-82
    • (2001) Annu. Rev. Genet. , vol.35 , pp. 53-82
    • Cox, M.M.1
  • 12
    • 0034595010 scopus 로고    scopus 로고
    • Re-establishment of inactivated replication forks as a bacterial housekeeping function
    • Cox M.M., Goodman M.F., Kreuzer K.N., Sherratt D.J., Sandler S.J., and Marians K.J. Re-establishment of inactivated replication forks as a bacterial housekeeping function. Nature 404 (2000) 37-41
    • (2000) Nature , vol.404 , pp. 37-41
    • Cox, M.M.1    Goodman, M.F.2    Kreuzer, K.N.3    Sherratt, D.J.4    Sandler, S.J.5    Marians, K.J.6
  • 13
    • 20444379976 scopus 로고    scopus 로고
    • Bacteriophage T4 helicase loader protein gp59 functions as gatekeeper in origin-dependent replication in vivo
    • Dudas K.C., and Kreuzer K.N. Bacteriophage T4 helicase loader protein gp59 functions as gatekeeper in origin-dependent replication in vivo. J. Biol. Chem. 280 (2005) 21561-21569
    • (2005) J. Biol. Chem. , vol.280 , pp. 21561-21569
    • Dudas, K.C.1    Kreuzer, K.N.2
  • 14
    • 0028851598 scopus 로고
    • Analysis of replication intermediates by two-dimensional agarose gel electrophoresis
    • Friedman K.L., and Brewer B.J. Analysis of replication intermediates by two-dimensional agarose gel electrophoresis. Methods Enzymol. 262 (1995) 613-627
    • (1995) Methods Enzymol. , vol.262 , pp. 613-627
    • Friedman, K.L.1    Brewer, B.J.2
  • 15
    • 14644415982 scopus 로고    scopus 로고
    • The disposition of nascent strands at stalled replication forks dictates the pathway of replisome loading during restart
    • Heller R.C., and Marians K.J. The disposition of nascent strands at stalled replication forks dictates the pathway of replisome loading during restart. Mol. Cell 17 (2005) 733-743
    • (2005) Mol. Cell , vol.17 , pp. 733-743
    • Heller, R.C.1    Marians, K.J.2
  • 16
    • 0033970936 scopus 로고    scopus 로고
    • An antitumor drug-induced topoisomerase cleavage complex blocks a bacteriophage T4 replication fork in vivo
    • Hong G., and Kreuzer K.N. An antitumor drug-induced topoisomerase cleavage complex blocks a bacteriophage T4 replication fork in vivo. Mol. Cell. Biol. 20 (2000) 594-603
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 594-603
    • Hong, G.1    Kreuzer, K.N.2
  • 17
    • 0037628627 scopus 로고    scopus 로고
    • Endonuclease cleavage of blocked replication forks: An indirect pathway of DNA damage from antitumor drug-topoisomerase complexes
    • Hong G., and Kreuzer K.N. Endonuclease cleavage of blocked replication forks: An indirect pathway of DNA damage from antitumor drug-topoisomerase complexes. Proc. Natl. Acad. Sci. USA 100 (2003) 5046-5051
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 5046-5051
    • Hong, G.1    Kreuzer, K.N.2
  • 18
    • 0029742239 scopus 로고    scopus 로고
    • Composite patterns in neutral/neutral two-dimensional gels demonstrate inefficient replication origin usage
    • Kalejta R.F., and Hamlin J.L. Composite patterns in neutral/neutral two-dimensional gels demonstrate inefficient replication origin usage. Mol. Cell. Biol. 16 (1996) 4915-4922
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 4915-4922
    • Kalejta, R.F.1    Hamlin, J.L.2
  • 19
    • 0029740659 scopus 로고    scopus 로고
    • Characterizing replication intermediates in the amplified CHO dihydrofolate reductase domain by two novel gel electrophoretic techniques
    • Kalejta R.F., Lin H.B., Dijkwel P.A., and Hamlin J.L. Characterizing replication intermediates in the amplified CHO dihydrofolate reductase domain by two novel gel electrophoretic techniques. Mol. Cell. Biol. 16 (1996) 4923-4931
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 4923-4931
    • Kalejta, R.F.1    Lin, H.B.2    Dijkwel, P.A.3    Hamlin, J.L.4
  • 20
    • 0027184784 scopus 로고
    • A rapid optimized protocol for downward alkaline Southern blotting of DNA
    • Koetsier P.A., Schorr J., and Doerfler W. A rapid optimized protocol for downward alkaline Southern blotting of DNA. BioTechniques 15 (1993) 260-262
    • (1993) BioTechniques , vol.15 , pp. 260-262
    • Koetsier, P.A.1    Schorr, J.2    Doerfler, W.3
  • 21
    • 27144433837 scopus 로고    scopus 로고
    • Interplay between DNA replication and recombination in prokaryotes
    • Kreuzer K.N. Interplay between DNA replication and recombination in prokaryotes. Annu. Rev. Microbiol. 59 (2005) 43-67
    • (2005) Annu. Rev. Microbiol. , vol.59 , pp. 43-67
    • Kreuzer, K.N.1
  • 22
    • 0032715175 scopus 로고    scopus 로고
    • Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda
    • Kuzminov A. Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol. Mol. Biol. Rev. 63 (1999) 751-813
    • (1999) Microbiol. Mol. Biol. Rev. , vol.63 , pp. 751-813
    • Kuzminov, A.1
  • 23
    • 0031585996 scopus 로고    scopus 로고
    • Study of plasmid replication in Escherichia coli with a combination of 2D gel electrophoresis and electron microscopy
    • Kuzminov A., Schabtach E., and Stahl F.W. Study of plasmid replication in Escherichia coli with a combination of 2D gel electrophoresis and electron microscopy. J. Mol. Biol. 268 (1997) 1-7
    • (1997) J. Mol. Biol. , vol.268 , pp. 1-7
    • Kuzminov, A.1    Schabtach, E.2    Stahl, F.W.3
  • 24
    • 0027957934 scopus 로고
    • Analysis of an origin of DNA amplification in Sciara coprophila by a novel three-dimensional gel method
    • Liang C., and Gerbi S.A. Analysis of an origin of DNA amplification in Sciara coprophila by a novel three-dimensional gel method. Mol. Cell. Biol. 14 (1994) 1520-1529
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 1520-1529
    • Liang, C.1    Gerbi, S.A.2
  • 26
    • 0035890272 scopus 로고    scopus 로고
    • Topoisomerase II can unlink replicating DNA by precatenane removal
    • Lucas I., Germe T., Chevrier-Miller M., and Hyrien O. Topoisomerase II can unlink replicating DNA by precatenane removal. EMBO J. 20 (2001) 6509-6519
    • (2001) EMBO J. , vol.20 , pp. 6509-6519
    • Lucas, I.1    Germe, T.2    Chevrier-Miller, M.3    Hyrien, O.4
  • 27
    • 0034177963 scopus 로고    scopus 로고
    • PriA-directed replication fork restart in Escherichia coli
    • Marians K.J. PriA-directed replication fork restart in Escherichia coli. Trends Biochem. Sci. 25 (2000) 185-189
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 185-189
    • Marians, K.J.1
  • 28
    • 1642443168 scopus 로고    scopus 로고
    • Mechanisms of replication fork restart in Escherichia coli
    • Marians K.J. Mechanisms of replication fork restart in Escherichia coli. Philos. Trans. R. Soc. Lond. B Biol. Sci. 359 (2004) 71-77
    • (2004) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.359 , pp. 71-77
    • Marians, K.J.1
  • 29
    • 0026499725 scopus 로고
    • Initiation of DNA replication in ColE1 plasmids containing multiple potential origins of replication
    • Martín-Parras L., Hernández P., Martínez-Robles M.L., and Schvartzman J.B. Initiation of DNA replication in ColE1 plasmids containing multiple potential origins of replication. J. Biol. Chem. 267 (1992) 22496-22505
    • (1992) J. Biol. Chem. , vol.267 , pp. 22496-22505
    • Martín-Parras, L.1    Hernández, P.2    Martínez-Robles, M.L.3    Schvartzman, J.B.4
  • 31
    • 0036844340 scopus 로고    scopus 로고
    • Recombinational repair and restart of damaged replication forks
    • McGlynn P., and Lloyd R.G. Recombinational repair and restart of damaged replication forks. Nat. Rev. Mol. Cell. Biol. 3 (2002) 859-870
    • (2002) Nat. Rev. Mol. Cell. Biol. , vol.3 , pp. 859-870
    • McGlynn, P.1    Lloyd, R.G.2
  • 32
    • 0034176967 scopus 로고    scopus 로고
    • Replication fork arrest and DNA recombination
    • Michel B. Replication fork arrest and DNA recombination. Trends Biochem. Sci. 25 (2000) 173-178
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 173-178
    • Michel, B.1
  • 33
    • 20344370231 scopus 로고    scopus 로고
    • Norfloxacin-induced DNA gyrase cleavage complexes block Escherichia coli replication forks, causing double-stranded breaks in vivo
    • Pohlhaus J.R., and Kreuzer K.N. Norfloxacin-induced DNA gyrase cleavage complexes block Escherichia coli replication forks, causing double-stranded breaks in vivo. Mol. Microbiol. 56 (2005) 1416-1429
    • (2005) Mol. Microbiol. , vol.56 , pp. 1416-1429
    • Pohlhaus, J.R.1    Kreuzer, K.N.2
  • 34
    • 0036267593 scopus 로고    scopus 로고
    • Replication restart in UV-irradiated Escherichia coli involving pols II, III, V, PriA, RecA and RecFOR proteins
    • Rangarajan S., Woodgate R., and Goodman M.F. Replication restart in UV-irradiated Escherichia coli involving pols II, III, V, PriA, RecA and RecFOR proteins. Mol. Microbiol. 43 (2002) 617-628
    • (2002) Mol. Microbiol. , vol.43 , pp. 617-628
    • Rangarajan, S.1    Woodgate, R.2    Goodman, M.F.3
  • 35
    • 0034123356 scopus 로고    scopus 로고
    • Multiple genetic pathways for restarting DNA replication forks in Escherichia coli K-12
    • Sandler S.J. Multiple genetic pathways for restarting DNA replication forks in Escherichia coli K-12. Genetics 155 (2000) 487-497
    • (2000) Genetics , vol.155 , pp. 487-497
    • Sandler, S.J.1
  • 36
  • 37
    • 0037178740 scopus 로고    scopus 로고
    • Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects
    • Sogo J.M., Lopes M., and Foiani M. Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects. Science 297 (2002) 599-602
    • (2002) Science , vol.297 , pp. 599-602
    • Sogo, J.M.1    Lopes, M.2    Foiani, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.