Identification of differentially expressed genes related to metabolic syndrome induced with high-fat diet in E3 rats

Experimental Biology and Medicine

Volumn 240, Issue 2, 2015, Pages 235-241

  Lan, Xi ^a,b   Li, Dongmin ^a,b   Zhong, Bo ^a,b   Ren, Juan ^a,b   Wang, Xuan ^a,b   Sun, Qingzhu ^a,b   Li, Yue ^a,b   Liu, Lee ^a,b   Liu, Li ^a,b   Lu, Shemin ^a,b  

^a XI'AN JIAOTONG UNIVERSITY   (China)

^b BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

Author keywords

differentially expressed genes; High fat diet induced metabolic syndrome; suppression subtractive hybridization

Indexed keywords

ACYL COENZYME A DESATURASE; ALBUMIN; COMPLEMENTARY DNA; GLUCOSE; HIGH DENSITY LIPOPROTEIN CHOLESTEROL; INITIATION FACTOR 1; LOW DENSITY LIPOPROTEIN CHOLESTEROL; MESSENGER RNA; PHOSPHATIDYLINOSITOL 5 PHOSPHATE 4 KINASE TYPE 2 ALPHA; PHOSPHATIDYLINOSITOL KINASE; PROTEIN; RIBONUCLEASE 4; RIBOSOMAL PROTEIN S12; RIBOSOMAL PROTEIN S24; SURFACTANT PROTEIN C; THYMOSIN BETA4; TRANSFERRIN; TRIACYLGLYCEROL; UNCLASSIFIED DRUG; URINARY PROTEIN 2; FAT INTAKE;

ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; BIOINFORMATICS; CHOLESTEROL BLOOD LEVEL; CONTROLLED STUDY; DNA LIBRARY; DNA SYNTHESIS; FEMALE; GENE EXPRESSION; HISTOPATHOLOGY; LIPID DIET; LIVER BIOPSY; MALE; METABOLIC SYNDROME X; NONHUMAN; PHENOTYPE; RAT; REAL TIME POLYMERASE CHAIN REACTION; RNA ISOLATION; RNA PURIFICATION; SUPPRESSION SUBTRACTIVE HYBRIDIZATION; UPREGULATION; ADVERSE EFFECTS; ANIMAL; CHEMICALLY INDUCED; DRUG EFFECTS; FAT INTAKE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; LIPID METABOLISM; LIVER; METABOLISM; NUCLEIC ACID DATABASE; PATHOLOGY; PHARMACOLOGY;

RATTUS;

ANIMALS; DATABASES, NUCLEIC ACID; DIETARY FATS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; LIPID METABOLISM; LIVER; METABOLIC SYNDROME X; RATS; REAL-TIME POLYMERASE CHAIN REACTION;

EID: 84922732269     PISSN: 15353702     EISSN: 15353699     Source Type: Journal    
DOI: 10.1177/1535370214554531     Document Type: Article

References (46)

1. Alberti KG,Eckel RH,Grundy SM,Zimmet PZ,Cleeman JI,Donato KA,Fruchart JC,James WP,Loria CM,Smith SC.Harmonizing the metabolic syndrome: a joint interim statement of the International Diabetes Federation Task Force on Epidemiology and Prevention; National Heart, Lung, and Blood Institute; American Heart Association; World Heart Federation; International Atherosclerosis Society; and International Association for the Study of Obesity.Circulation. 2009;120:1640-45
2. Kelly T,Yang W,Chen CS,Reynolds K,He J.Global burden of obesity in 2005 and projections to 2030.Int J Obes (Lond). 2008;32:1431-37
3. Adams LA,Lymp JF,St Sauver J,Sanderson SO,Lindor KD,Feldstein A,Angulo P.The natural history of nonalcoholic fatty liver disease: a population-based cohort study.Gastroenterology. 2005;129:113-21
4. Fabbrini E,Sullivan S,Klein S.Obesity and nonalcoholic fatty liver disease: biochemical, metabolic, and clinical implications.Hepatology. 2010;51:679-89
5. Yilmaz Y,Younossi ZM.Obesity-associated nonalcoholic fatty liver disease.Clin Liver Dis. 2013;18:19-31
6. Kotronen A,Yki-Jarvinen H.Fatty liver: a novel component of the metabolic syndrome.Arterioscler Thromb Vasc Biol. 2008;28:27-38
7. de Alwis NM,Day CP.Non-alcoholic fatty liver disease: the mist gradually clears.J Hepatol. 2008;48:S104-12
8. Targher G,Marra F,Marchesini G.Increased risk of cardiovascular disease in non-alcoholic fatty liver disease: causal effect or epiphenomenon?.Diabetologia. 2008;51:1947-53
9. Targher G,Day CP,Bonora E.Risk of cardiovascular disease in patients with nonalcoholic fatty liver disease.N Engl J Med. 2010;363:1341-50
10. Lammens E,Ceyssens PJ,Voet M,Hertveldt K,Lavigne R,Volckaert G.Representational difference analysis (RDA) of bacteriophage genomes.J Microbiol Methods. 2009;77:207-13
11. Chen Q,Zhang C,Chen Y,Lou J,Wang D.Identification of endometriosis-related genes by representational difference analysis of cDNA.Aust N Z J Obstet Gynaecol. 2012;52:140-45
12. Ma'ayeh SY,Brook-Carter PT.Representational difference analysis identifies specific genes in the interaction of Giardia duodenalis with the murine intestinal epithelial cell line, IEC-6.Int J Parasitol. 2012;42:501-09
13. Harima Y,Ikeda K,Utsunomiya K,Shiga T,Komemushi A,Kojima H,Nomura M,Kamata M,Sawada S.Identification of genes associated with progression and metastasis of advanced cervical cancers after radiotherapy by cDNA microarray analysis.Int J Radiat Oncol Biol Phys. 2009;75:1232-39
14. Mitsui H,Suarez-Farinas M,Belkin DA,Levenkova N,Fuentes-Duculan J,Coats I,Fujita H,Krueger JG.Combined use of laser capture microdissection and cDNA microarray analysis identifies locally expressed disease-related genes in focal regions of psoriasis vulgaris skin lesions.J Invest Dermatol. 2012;132:1615-26
15. Rebrikov DV,Desai SM,Siebert PD,Lukyanov SA.Suppression subtractive hybridization.Methods Mol Biol. 2004;258:107-34
16. Diatchenko L,Lau YF,Campbell AP,Chenchik A,Moqadam F,Huang B,Lukyanov S,Lukyanov K,Gurskaya N,Sverdlov ED,Siebert PD.Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries.Proc Natl Acad Sci U S A. 1996;93:6025-30
17. Harada T,Torii Y,Morita S,Masumura T,Satoh S.Differential expression of genes identified by suppression subtractive hybridization in petals of opening carnation flowers.J Exp Bot. 2010;61:2345-54
18. Wang W,Zhong B,Sun J,Cao J,Tian J,Zhong N,Zhao W,Tian L,Xu P,Guo D,Ju X,Ma W,Li M,Hou W,Lu S.Down-regulated HS6ST2 in osteoarthritis and Kashin-Beck disease inhibits cell viability and influences expression of the genes relevant to aggrecan metabolism of human chondrocytes.Rheumatology (Oxford). 2011;50:2176-86
19. He X,Li B,Wang F,Tian C,Rong W,Liu Y.Identification of differentially expressed genes in Mongolian sheep ovaries by suppression subtractive hybridization.Anim Reprod Sci. 2012;133:86-92
20. Jiang W,Yang YX,Xue P,Huang YJ,Chen YL.Identification of genes preferentially expressed in goat hair follicle anagen-catagen transition using suppression subtractive hybridization.Anim Biotechnol. 2012;23:11-23
21. Gao Q,Tancredi SE,Thompson GJ.Identification of mycosis-related genes in the eastern subterranean termite by suppression subtractive hybridization.Arch Insect Biochem Physiol. 2012;80:63-76
22. Li D,Wang X,Ren W,Ren J,Lan X,Wang F,Li H,Zhang F,Han Y,Song T,Holmdahl R,Lu S.High expression of liver histone deacetylase 3 contributes to high-fat-diet-induced metabolic syndrome by suppressing the PPAR-gamma and LXR-alpha-pathways in E3 rats.Mol Cell Endocrinol. 2011;344:69-80
23. Kim S,Sohn I,Lee YS,Lee YS.Hepatic gene expression profiles are altered by genistein supplementation in mice with diet-induced obesity.J Nutr. 2005;135:33-41
24. Li J,Yu X,Pan W,Unger RH.Gene expression profile of rat adipose tissue at the onset of high-fat-diet obesity.Am J Physiol Endocrinol Metab. 2002;282:E1334-41
25. Das UN,Rao AA.Gene expression profile in obesity and type 2 diabetes mellitus.Lipids Health Dis. 2007;6:35-35
26. Xu C,Wang G,Hao Y,Zhi J,Zhang L,Chang C.Correlation analysis between gene expression profile of rat liver tissues and high-fat emulsion-induced nonalcoholic fatty liver.Dig Dis Sci. 2011;56:2299-2308
27. Lan H,Rabaglia ME,Stoehr JP,Nadler ST,Schueler KL,Zou F,Yandell BS,Attie AD.Gene expression profiles of nondiabetic and diabetic obese mice suggest a role of hepatic lipogenic capacity in diabetes susceptibility.Diabetes. 2003;52:688-700
28. Ishizaka N,Ishizaka Y,Nagai R,Toda E,Hashimoto H,Yamakado M.Association between serum albumin, carotid atherosclerosis, and metabolic syndrome in Japanese individuals.Atherosclerosis. 2007;193:373-79
29. Lloyd CE,Kalinyak JE,Hutson SM,Jefferson LS.Stimulation of albumin gene transcription by insulin in primary cultures of rat hepatocytes.Am J Physiol. 1987;252:C205-14
30. Peavy DE,Taylor JM,Jefferson LS.Time course of changes in albumin synthesis and mRNA in diabetic and insulin-treated diabetic rats.Am J Physiol. 1985;248:E656-63
31. Kimball SR,Horetsky RL,Jefferson LS.Hormonal regulation of albumin gene expression in primary cultures of rat hepatocytes.Am J Physiol. 1995;268:E6-14
32. Carricaburu V,Lamia KA,Lo E,Favereaux L,Payrastre B,Cantley LC,Rameh LE.The phosphatidylinositol (PI)-5-phosphate 4-kinase type II enzyme controls insulin signaling by regulating PI-3,4,5-trisphosphate degradation.Proc Natl Acad Sci U S A. 2003;100:9867-72
33. Xu T,Huang W,Zhang X,Ye B,Zhou H,Hou S.Identification and characterization of genes related to the development of breast muscles in Pekin duck.Mol Biol Rep. 2012;39:7647-55
34. Avramoglu RK,Basciano H,Adeli K.Lipid and lipoprotein dysregulation in insulin resistant states.Clin Chim Acta. 2006;368:1-19
35. Ntambi JM,Miyazaki M,Stoehr JP,Lan H,Kendziorski CM,Yandell BS,Song Y,Cohen P,Friedman JM,Attie AD.Loss of stearoyl-CoA desaturase-1 function protects mice against adiposity.Proc Natl Acad Sci U S A. 2002;99:11482-86
36. Cohen P,Miyazaki M,Socci ND,Hagge-Greenberg A,Liedtke W,Soukas AA,Sharma R,Hudgins LC,Ntambi JM,Friedman JM.Role for stearoyl-CoA desaturase-1 in leptin-mediated weight loss.Science. 2002;297:240-43
37. Gutierrez-Juarez R,Pocai A,Mulas C,Ono H,Bhanot S,Monia BP,Rossetti L.Critical role of stearoyl-CoA desaturase-1 (SCD1) in the onset of diet-induced hepatic insulin resistance.J Clin Invest. 2006;116:1686-95
38. MacDonald ML,van Eck M,Hildebrand RB,Wong BW,Bissada N,Ruddle P,Kontush A,Hussein H,Pouladi MA,Chapman MJ,Fievet C,van Berkel TJ,Staels B,McManus BM,Hayden MR.Despite antiatherogenic metabolic characteristics, SCD1-deficient mice have increased inflammation and atherosclerosis.Arterioscler Thromb Vasc Biol. 2009;29:341-47
39. Lottenberg AM,Afonso Mda S,Lavrador MS,Machado RM,Nakandakare ER.The role of dietary fatty acids in the pathology of metabolic syndrome.J Nutr Biochem. 2012;23:1027-40
40. Evans RW,Kong X,Hider RC.Iron mobilization from transferrin by therapeutic iron chelating agents.Biochim Biophys Acta. 2012;1820:282-90
41. Vari IS,Balkau B,Kettaneh A,Andre P,Tichet J,Fumeron F,Caces E,Marre M,Grandchamp B,Ducimetiere P.Ferritin and transferrin are associated with metabolic syndrome abnormalities and their change over time in a general population: Data from an Epidemiological Study on the Insulin Resistance Syndrome (DESIR).Diabetes Care. 2007;30:1795-1801
42. Chaudhuri J,Si K,Maitra U.Function of eukaryotic translation initiation factor 1A (eIF1A) (formerly called eIF-4C) in initiation of protein synthesis.J Biol Chem. 1997;272:7883-91
43. Rosenberg HF,Dyer KD.Human ribonuclease 4 (RNase 4): coding sequence, chromosomal localization and identification of two distinct transcripts in human somatic tissues.Nucleic Acids Res. 1995;23:4290-95
44. Kenmochi N,Kawaguchi T,Rozen S,Davis E,Goodman N,Hudson TJ,Tanaka T,Page DC.A map of 75 human ribosomal protein genes.Genome Res. 1998;8:509-23
45. Goldstein AL,Hannappel E,Sosne G,Kleinman HK.Thymosin beta4: a multi-functional regenerative peptide. Basic properties and clinical applications.Expert Opin Biol Ther. 2012;12:37-51
46. Wei C,Kumar S,Kim IK,Gupta S.Thymosin beta 4 protects cardiomyocytes from oxidative stress by targeting anti-oxidative enzymes and anti-apoptotic genes.PLoS One. 2012;7:e42586-e42586