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Volumn 24, Issue , 2015, Pages 104-112

Microbial individuality: how single-cell heterogeneity enables population level strategies

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC RESISTANCE; ASYMMETRIC CELL DIVISION; CELL ACTIVATION; CELL CYCLE PROGRESSION; CELL DEATH; CELL FUNCTION; CELL HETEROGENEITY; CELL POPULATION; DAUGHTER CELL; ENVIRONMENTAL CHANGE; ESSENTIAL GENE; GENE TRANSLOCATION; MICROBIAL COMMUNITY; MICROORGANISM; NOISE; NONHUMAN; OSMOTIC STRESS; PHENOTYPE; POSITIVE FEEDBACK; PROTEIN DEPHOSPHORYLATION; PROTEIN PHOSPHORYLATION; REVIEW; YEAST; BACTERIUM; GENE EXPRESSION REGULATION; METABOLISM; MICROBIOLOGICAL PHENOMENA AND FUNCTIONS; SINGLE CELL ANALYSIS;

EID: 84922650864     PISSN: 13695274     EISSN: 18790364     Source Type: Journal    
DOI: 10.1016/j.mib.2015.01.003     Document Type: Review
Times cited : (115)

References (60)
  • 1
    • 0001641514 scopus 로고
    • Mutations of bacteria from virus sensitivity to virus resistance
    • Luria S.E., Delbrück M. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 1943, 28:491.
    • (1943) Genetics , vol.28 , pp. 491
    • Luria, S.E.1    Delbrück, M.2
  • 2
    • 0001389945 scopus 로고
    • Enzyme induction as an all-or-none phenomenon
    • Novick A., Weiner M. Enzyme induction as an all-or-none phenomenon. Proc Natl Acad Sci U S A 1957, 43:553-566.
    • (1957) Proc Natl Acad Sci U S A , vol.43 , pp. 553-566
    • Novick, A.1    Weiner, M.2
  • 3
    • 84897139457 scopus 로고    scopus 로고
    • Every cell is special: genome-wide studies add a new dimension to single-cell biology
    • Junker J.P., van Oudenaarden A. Every cell is special: genome-wide studies add a new dimension to single-cell biology. Cell 2014, 157:8-11.
    • (2014) Cell , vol.157 , pp. 8-11
    • Junker, J.P.1    van Oudenaarden, A.2
  • 4
    • 84893341950 scopus 로고    scopus 로고
    • Noise in biology
    • Tsimring L.S. Noise in biology. Rep Prog Phys 2014, 77:026601.
    • (2014) Rep Prog Phys , vol.77 , pp. 026601
    • Tsimring, L.S.1
  • 6
    • 84888645996 scopus 로고    scopus 로고
    • Memory and modularity in cell-fate decision making
    • Norman T.M., Lord N.D., Paulsson J., Losick R. Memory and modularity in cell-fate decision making. Nature 2013, 503:481-486.
    • (2013) Nature , vol.503 , pp. 481-486
    • Norman, T.M.1    Lord, N.D.2    Paulsson, J.3    Losick, R.4
  • 8
    • 84876588798 scopus 로고    scopus 로고
    • Increasing population growth by asymmetric segregation of a limiting resource during cell division
    • Avraham N., Soifer I., Carmi M., Barkai N. Increasing population growth by asymmetric segregation of a limiting resource during cell division. Mol Syst Biol 2013, 9:656.
    • (2013) Mol Syst Biol , vol.9 , pp. 656
    • Avraham, N.1    Soifer, I.2    Carmi, M.3    Barkai, N.4
  • 9
    • 84861544417 scopus 로고    scopus 로고
    • Bet hedging in yeast by heterogeneous, age-correlated expression of a stress protectant
    • Levy S.F., Ziv N., Siegal M.L. Bet hedging in yeast by heterogeneous, age-correlated expression of a stress protectant. PLoS Biol 2012, 10:e1001325.
    • (2012) PLoS Biol , vol.10 , pp. e1001325
    • Levy, S.F.1    Ziv, N.2    Siegal, M.L.3
  • 12
    • 77955102352 scopus 로고    scopus 로고
    • Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
    • Taniguchi Y., Choi P.J., Li G.-W., Chen H., Babu M., Hearn J., Emili A., Xie X.S. Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 2010, 329:533-538.
    • (2010) Science , vol.329 , pp. 533-538
    • Taniguchi, Y.1    Choi, P.J.2    Li, G.-W.3    Chen, H.4    Babu, M.5    Hearn, J.6    Emili, A.7    Xie, X.S.8
  • 13
    • 42949131308 scopus 로고    scopus 로고
    • Selection to minimise noise in living systems and its implications for the evolution of gene expression
    • Lehner B. Selection to minimise noise in living systems and its implications for the evolution of gene expression. Mol Syst Biol 2008, 4:170.
    • (2008) Mol Syst Biol , vol.4 , pp. 170
    • Lehner, B.1
  • 14
    • 84872813837 scopus 로고    scopus 로고
    • Tunable signal processing through modular control of transcription factor translocation
    • Hao N., Budnik B.A., Gunawardena J., O'Shea E.K. Tunable signal processing through modular control of transcription factor translocation. Science 2013, 339:460-464.
    • (2013) Science , vol.339 , pp. 460-464
    • Hao, N.1    Budnik, B.A.2    Gunawardena, J.3    O'Shea, E.K.4
  • 15
    • 84855424553 scopus 로고    scopus 로고
    • Signal-dependent dynamics of transcription factor translocation controls gene expression
    • Hao N., O'Shea E.K. Signal-dependent dynamics of transcription factor translocation controls gene expression. Nat Struct Mol Biol 2011, 19:31-39.
    • (2011) Nat Struct Mol Biol , vol.19 , pp. 31-39
    • Hao, N.1    O'Shea, E.K.2
  • 17
    • 84874629638 scopus 로고    scopus 로고
    • Rate of environmental change determines stress response specificity
    • Young J.W., Locke J.C., Elowitz M.B. Rate of environmental change determines stress response specificity. Proc Natl Acad Sci U S A 2013, 110:4140-4145.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 4140-4145
    • Young, J.W.1    Locke, J.C.2    Elowitz, M.B.3
  • 19
    • 84889256682 scopus 로고    scopus 로고
    • Functional roles of pulsing in genetic circuits
    • Levine J.H., Lin Y., Elowitz M.B. Functional roles of pulsing in genetic circuits. Science 2013, 342:1193-1200.
    • (2013) Science , vol.342 , pp. 1193-1200
    • Levine, J.H.1    Lin, Y.2    Elowitz, M.B.3
  • 20
    • 84859226953 scopus 로고    scopus 로고
    • Spo0A-P imposes a temporal gate for the bimodal expression of competence in Bacillus subtilis
    • Mirouze N., Desai Y., Raj A., Dubnau D. Spo0A-P imposes a temporal gate for the bimodal expression of competence in Bacillus subtilis. PLoS Genet 2012, 8:e1002586.
    • (2012) PLoS Genet , vol.8 , pp. e1002586
    • Mirouze, N.1    Desai, Y.2    Raj, A.3    Dubnau, D.4
  • 22
    • 84891949316 scopus 로고    scopus 로고
    • Contribution of phenotypic heterogeneity to adaptive antibiotic resistance
    • Sánchez-Romero M.A., Casadesús J. Contribution of phenotypic heterogeneity to adaptive antibiotic resistance. Proc Natl Acad Sci U S A 2014, 111:355-360.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 355-360
    • Sánchez-Romero, M.A.1    Casadesús, J.2
  • 23
    • 0022652442 scopus 로고
    • The rate of killing of Escherichia coli by β-lactam antibiotics is strictly proportional to the rate of bacterial growth
    • Tuomanen E., Cozens R., Tosch W., Zak O., Tomasz A. The rate of killing of Escherichia coli by β-lactam antibiotics is strictly proportional to the rate of bacterial growth. J Gen Microbiol 1986, 132:1297-1304.
    • (1986) J Gen Microbiol , vol.132 , pp. 1297-1304
    • Tuomanen, E.1    Cozens, R.2    Tosch, W.3    Zak, O.4    Tomasz, A.5
  • 25
    • 84883342218 scopus 로고    scopus 로고
    • (p) ppGpp controls bacterial persistence by stochastic induction of toxin-antitoxin activity
    • Maisonneuve E., Castro-Camargo M., Gerdes K. (p) ppGpp controls bacterial persistence by stochastic induction of toxin-antitoxin activity. Cell 2013, 154:1140-1150.
    • (2013) Cell , vol.154 , pp. 1140-1150
    • Maisonneuve, E.1    Castro-Camargo, M.2    Gerdes, K.3
  • 28
    • 84859641038 scopus 로고    scopus 로고
    • Using gene expression noise to understand gene regulation
    • Munsky B., Neuert G., van Oudenaarden A. Using gene expression noise to understand gene regulation. Science 2012, 336:183-187.
    • (2012) Science , vol.336 , pp. 183-187
    • Munsky, B.1    Neuert, G.2    van Oudenaarden, A.3
  • 29
    • 38349185928 scopus 로고    scopus 로고
    • Effects of molecular memory and bursting on fluctuations in gene expression
    • Pedraza J.M., Paulsson J. Effects of molecular memory and bursting on fluctuations in gene expression. Science 2008, 319:339-343.
    • (2008) Science , vol.319 , pp. 339-343
    • Pedraza, J.M.1    Paulsson, J.2
  • 30
    • 43249118966 scopus 로고    scopus 로고
    • Colored extrinsic fluctuations and stochastic gene expression
    • Shahrezaei V., Ollivier J.F., Swain P.S. Colored extrinsic fluctuations and stochastic gene expression. Mol Syst Biol 2008, 4:196.
    • (2008) Mol Syst Biol , vol.4 , pp. 196
    • Shahrezaei, V.1    Ollivier, J.F.2    Swain, P.S.3
  • 31
    • 84884687582 scopus 로고    scopus 로고
    • Tunable stochastic pulsing in the Escherichia coli multiple antibiotic resistance network from interlinked positive and negative feedback loops
    • Garcia-Bernardo J., Dunlop M.J. Tunable stochastic pulsing in the Escherichia coli multiple antibiotic resistance network from interlinked positive and negative feedback loops. PLoS Comput Biol 2013, 9:e1003229.
    • (2013) PLoS Comput Biol , vol.9 , pp. e1003229
    • Garcia-Bernardo, J.1    Dunlop, M.J.2
  • 32
    • 84888791540 scopus 로고    scopus 로고
    • The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria
    • Deris J.B., Kim M., Zhang Z., Okano H., Hermsen R., Groisman A., Hwa T. The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria. Science 2013, 342:1237435.
    • (2013) Science , vol.342 , pp. 1237435
    • Deris, J.B.1    Kim, M.2    Zhang, Z.3    Okano, H.4    Hermsen, R.5    Groisman, A.6    Hwa, T.7
  • 33
    • 84856097541 scopus 로고    scopus 로고
    • Bistability in feedback circuits as a byproduct of evolution of evolvability
    • Kuwahara H., Soyer O.S. Bistability in feedback circuits as a byproduct of evolution of evolvability. Mol Syst Biol 2012, 8:564.
    • (2012) Mol Syst Biol , vol.8 , pp. 564
    • Kuwahara, H.1    Soyer, O.S.2
  • 34
    • 77956520011 scopus 로고    scopus 로고
    • Functional roles for noise in genetic circuits
    • Eldar A., Elowitz M.B. Functional roles for noise in genetic circuits. Nature 2010, 467:167-173.
    • (2010) Nature , vol.467 , pp. 167-173
    • Eldar, A.1    Elowitz, M.B.2
  • 35
    • 33645293152 scopus 로고    scopus 로고
    • An excitable gene regulatory circuit induces transient cellular differentiation
    • Süel G.M., Garcia-Ojalvo J., Liberman L.M., Elowitz M.B. An excitable gene regulatory circuit induces transient cellular differentiation. Nature 2006, 440:545-550.
    • (2006) Nature , vol.440 , pp. 545-550
    • Süel, G.M.1    Garcia-Ojalvo, J.2    Liberman, L.M.3    Elowitz, M.B.4
  • 36
    • 84872329554 scopus 로고    scopus 로고
    • Decoupling nutrient signaling from growth rate causes aerobic glycolysis and deregulation of cell size and gene expression
    • Slavov N., Botstein D. Decoupling nutrient signaling from growth rate causes aerobic glycolysis and deregulation of cell size and gene expression. Mol Biol Cell 2013, 24:157-168.
    • (2013) Mol Biol Cell , vol.24 , pp. 157-168
    • Slavov, N.1    Botstein, D.2
  • 41
    • 84893398632 scopus 로고    scopus 로고
    • Bacterial growth: global effects on gene expression, growth feedback and proteome partition
    • Klumpp S., Hwa T. Bacterial growth: global effects on gene expression, growth feedback and proteome partition. Curr Opin Biotechnol 2014, 28:96-102.
    • (2014) Curr Opin Biotechnol , vol.28 , pp. 96-102
    • Klumpp, S.1    Hwa, T.2
  • 42
    • 70350324632 scopus 로고    scopus 로고
    • Emergent bistability by a growth-modulating positive feedback circuit
    • Tan C., Marguet P., You L. Emergent bistability by a growth-modulating positive feedback circuit. Nat Chem Biol 2009, 5:842-848.
    • (2009) Nat Chem Biol , vol.5 , pp. 842-848
    • Tan, C.1    Marguet, P.2    You, L.3
  • 44
    • 41349119880 scopus 로고    scopus 로고
    • Stochastic switching as a survival strategy in fluctuating environments
    • Acar M., Mettetal J.T., van Oudenaarden A. Stochastic switching as a survival strategy in fluctuating environments. Nat Genet 2008, 40:471-475.
    • (2008) Nat Genet , vol.40 , pp. 471-475
    • Acar, M.1    Mettetal, J.T.2    van Oudenaarden, A.3
  • 45
    • 25444489027 scopus 로고    scopus 로고
    • Phenotypic diversity, population growth, and information in fluctuating environments
    • Kussell E., Leibler S. Phenotypic diversity, population growth, and information in fluctuating environments. Science 2005, 309:2075-2078.
    • (2005) Science , vol.309 , pp. 2075-2078
    • Kussell, E.1    Leibler, S.2
  • 46
    • 0024928639 scopus 로고
    • Hedging one's evolutionary bets, revisited
    • Philippi T., Seger J. Hedging one's evolutionary bets, revisited. Trends Ecol Evol 1989, 4:41-44.
    • (1989) Trends Ecol Evol , vol.4 , pp. 41-44
    • Philippi, T.1    Seger, J.2
  • 47
    • 79951552049 scopus 로고    scopus 로고
    • Bet hedging or not? A guide to proper classification of microbial survival strategies
    • de Jong I.G., Haccou P., Kuipers O.P. Bet hedging or not? A guide to proper classification of microbial survival strategies. Bioessays 2011, 33:215-223.
    • (2011) Bioessays , vol.33 , pp. 215-223
    • de Jong, I.G.1    Haccou, P.2    Kuipers, O.P.3
  • 48
    • 37149051107 scopus 로고    scopus 로고
    • Is bacterial persistence a social trait?
    • Gardner A., West S.A., Griffin A.S. Is bacterial persistence a social trait?. PLoS One 2007, 2:e752.
    • (2007) PLoS One , vol.2 , pp. e752
    • Gardner, A.1    West, S.A.2    Griffin, A.S.3
  • 49
    • 84856761703 scopus 로고    scopus 로고
    • Different cell fates from cell-cell interactions: core architectures of two-cell bistable networks
    • Rouault H., Hakim V. Different cell fates from cell-cell interactions: core architectures of two-cell bistable networks. Biophys J 2012, 102:417-426.
    • (2012) Biophys J , vol.102 , pp. 417-426
    • Rouault, H.1    Hakim, V.2
  • 54
    • 84876492379 scopus 로고    scopus 로고
    • Microbial individuality in the natural environment
    • Ackermann M. Microbial individuality in the natural environment. ISME J 2013, 7:465-467.
    • (2013) ISME J , vol.7 , pp. 465-467
    • Ackermann, M.1
  • 55
    • 77957802374 scopus 로고    scopus 로고
    • Studying bacterial transcriptomes using RNA-seq
    • Croucher N.J., Thomson N.R. Studying bacterial transcriptomes using RNA-seq. Curr Opin Microbiol 2010, 13:619-624.
    • (2010) Curr Opin Microbiol , vol.13 , pp. 619-624
    • Croucher, N.J.1    Thomson, N.R.2
  • 56
    • 84863202666 scopus 로고    scopus 로고
    • Single-cell systems biology by super-resolution imaging and combinatorial labeling
    • Lubeck E., Cai L. Single-cell systems biology by super-resolution imaging and combinatorial labeling. Nat Methods 2012, 9:743-748.
    • (2012) Nat Methods , vol.9 , pp. 743-748
    • Lubeck, E.1    Cai, L.2
  • 58
    • 84891917327 scopus 로고    scopus 로고
    • Direct observation of single stationary-phase bacteria reveals a surprisingly long period of constant protein production activity
    • Gefen O., Fridman O., Ronin I., Balaban N.Q. Direct observation of single stationary-phase bacteria reveals a surprisingly long period of constant protein production activity. Proc Natl Acad Sci U S A 2014, 111:556-561.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 556-561
    • Gefen, O.1    Fridman, O.2    Ronin, I.3    Balaban, N.Q.4
  • 59
    • 64049093033 scopus 로고    scopus 로고
    • A framework for evolutionary systems biology
    • Loewe L. A framework for evolutionary systems biology. BMC Syst Biol 2009, 3:27.
    • (2009) BMC Syst Biol , vol.3 , pp. 27
    • Loewe, L.1
  • 60
    • 84880324632 scopus 로고    scopus 로고
    • Evolutionary systems biology: what it is and why it matters
    • Soyer O.S., O'Malley M.A. Evolutionary systems biology: what it is and why it matters. Bioessays 2013, 35:696-705.
    • (2013) Bioessays , vol.35 , pp. 696-705
    • Soyer, O.S.1    O'Malley, M.A.2


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