-
1
-
-
0001639179
-
The growth of bacterial cultures
-
Monod J. The growth of bacterial cultures. Annu Rev Microbiol 1949, 3:371-394.
-
(1949)
Annu Rev Microbiol
, vol.3
, pp. 371-394
-
-
Monod, J.1
-
2
-
-
0014030724
-
From enzymatic adaptation to allosteric transitions
-
Monod J. From enzymatic adaptation to allosteric transitions. Science 1966, 154:475-483.
-
(1966)
Science
, vol.154
, pp. 475-483
-
-
Monod, J.1
-
4
-
-
0032796420
-
Bacterial growth: constant obsession with dN/dt
-
Neidhardt F.C. Bacterial growth: constant obsession with dN/dt. J Bacteriol 1999, 181:7405-7408.
-
(1999)
J Bacteriol
, vol.181
, pp. 7405-7408
-
-
Neidhardt, F.C.1
-
5
-
-
33750602043
-
From growth physiology to systems biology
-
Schaechter M. From growth physiology to systems biology. Int Microbiol 2006, 9:157-161.
-
(2006)
Int Microbiol
, vol.9
, pp. 157-161
-
-
Schaechter, M.1
-
6
-
-
0035125986
-
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
-
Edwards J.S., Ibarra R.U., Palsson B.O. In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat Biotechnol 2001, 19:125-130.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 125-130
-
-
Edwards, J.S.1
Ibarra, R.U.2
Palsson, B.O.3
-
7
-
-
77955715329
-
Robust growth of Escherichia coli
-
Wang P., Robert L., Pelletier J., Dang W.L., Taddei F., Wright A., Jun S. Robust growth of Escherichia coli. Curr Biol 2010, 20:1099-1103.
-
(2010)
Curr Biol
, vol.20
, pp. 1099-1103
-
-
Wang, P.1
Robert, L.2
Pelletier, J.3
Dang, W.L.4
Taddei, F.5
Wright, A.6
Jun, S.7
-
8
-
-
66249088017
-
The second wave of synthetic biology: from modules to systems
-
Purnick P.E., Weiss R. The second wave of synthetic biology: from modules to systems. Nat Rev Mol Cell Biol 2009, 10:410-422.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 410-422
-
-
Purnick, P.E.1
Weiss, R.2
-
10
-
-
33748953866
-
Genetic parts to program bacteria
-
Voigt C.A. Genetic parts to program bacteria. Curr Opin Biotechnol 2006, 17:548-557.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 548-557
-
-
Voigt, C.A.1
-
11
-
-
34347232364
-
Combinatorial transcriptional control of the lactose operon of Escherichia coli
-
Kuhlman T., Zhang Z., Saier M.H., Hwa T. Combinatorial transcriptional control of the lactose operon of Escherichia coli. Proc Natl Acad Sci U S A 2007, 104:6043-6048.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 6043-6048
-
-
Kuhlman, T.1
Zhang, Z.2
Saier, M.H.3
Hwa, T.4
-
12
-
-
78449268845
-
Interdependence of cell growth and gene expression: origins and consequences
-
Scott M., Gunderson C.W., Mateescu E.M., Zhang Z., Hwa T. Interdependence of cell growth and gene expression: origins and consequences. Science 2010, 330:1099-1102.
-
(2010)
Science
, vol.330
, pp. 1099-1102
-
-
Scott, M.1
Gunderson, C.W.2
Mateescu, E.M.3
Zhang, Z.4
Hwa, T.5
-
13
-
-
0000640710
-
Modulation of chemical composition and other parameters of the cell by growth rate
-
ASM Press, F.C. Neidhardt (Ed.)
-
Bremer H., Dennis P.P. Modulation of chemical composition and other parameters of the cell by growth rate. Escherichia coli and Salmonella 1996, 1553-1569. ASM Press. second edn. F.C. Neidhardt (Ed.).
-
(1996)
Escherichia coli and Salmonella
, pp. 1553-1569
-
-
Bremer, H.1
Dennis, P.P.2
-
14
-
-
58149527756
-
Growth-rate-dependent partitioning of RNA polymerases in bacteria
-
Klumpp S., Hwa T. Growth-rate-dependent partitioning of RNA polymerases in bacteria. Proc Natl Acad Sci U S A 2008, 105:20245-20250.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 20245-20250
-
-
Klumpp, S.1
Hwa, T.2
-
15
-
-
78751608440
-
Beware of metaphors: chasses and orthogonality in synthetic biology
-
de Lorenzo V. Beware of metaphors: chasses and orthogonality in synthetic biology. Bioeng Bugs 2011, 2:3-7.
-
(2011)
Bioeng Bugs
, vol.2
, pp. 3-7
-
-
de Lorenzo, V.1
-
16
-
-
84863608607
-
Scaling up synthetic biology: do not forget the chassis
-
Danchin A. Scaling up synthetic biology: do not forget the chassis. FEBS Lett 2012, 586:2129-2137.
-
(2012)
FEBS Lett
, vol.586
, pp. 2129-2137
-
-
Danchin, A.1
-
17
-
-
75149167486
-
Five hard truths for synthetic biology
-
Kwok R. Five hard truths for synthetic biology. Nature 2010, 463:288-290.
-
(2010)
Nature
, vol.463
, pp. 288-290
-
-
Kwok, R.1
-
18
-
-
84863322344
-
Contextualizing context for synthetic biology-identifying causes of failure of synthetic biological systems
-
Cardinale S., Arkin A.P. Contextualizing context for synthetic biology-identifying causes of failure of synthetic biological systems. Biotechnol J 2012, 7:856-866.
-
(2012)
Biotechnol J
, vol.7
, pp. 856-866
-
-
Cardinale, S.1
Arkin, A.P.2
-
19
-
-
0001140586
-
Dependency on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium
-
Schaechter M., Maaløe O., Kjeldgaard N.O. Dependency on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium. J Gen Microbiol 1958, 19:592-606.
-
(1958)
J Gen Microbiol
, vol.19
, pp. 592-606
-
-
Schaechter, M.1
Maaløe, O.2
Kjeldgaard, N.O.3
-
20
-
-
72249097352
-
Growth rate-dependent global effects on gene expression in bacteria
-
Klumpp S., Zhang Z., Hwa T. Growth rate-dependent global effects on gene expression in bacteria. Cell 2009, 139:1366-1375.
-
(2009)
Cell
, vol.139
, pp. 1366-1375
-
-
Klumpp, S.1
Zhang, Z.2
Hwa, T.3
-
21
-
-
84883815154
-
Dilution and the theoretical description of growth-rate dependent gene expression
-
Hintsche M., Klumpp S. Dilution and the theoretical description of growth-rate dependent gene expression. J Biol Eng 2013, 7:22.
-
(2013)
J Biol Eng
, vol.7
, pp. 22
-
-
Hintsche, M.1
Klumpp, S.2
-
22
-
-
0017398005
-
Physiological regulation of a decontrolled lac operon
-
Wanner B.L., Kodaira R., Neidhardt F.C. Physiological regulation of a decontrolled lac operon. J Bacteriol 1977, 130:212-222.
-
(1977)
J Bacteriol
, vol.130
, pp. 212-222
-
-
Wanner, B.L.1
Kodaira, R.2
Neidhardt, F.C.3
-
23
-
-
0000892375
-
Regulation of the protein-synthesizing machinery-ribosomes, tRNA, factors, and so on
-
Plenum Press, R.F. Goldberger (Ed.)
-
Maaloe O. Regulation of the protein-synthesizing machinery-ribosomes, tRNA, factors, and so on. Biological Regulation and Development 1979, 487-542. Plenum Press. R.F. Goldberger (Ed.).
-
(1979)
Biological Regulation and Development
, pp. 487-542
-
-
Maaloe, O.1
-
24
-
-
79960943853
-
Bacterial growth laws and their applications
-
Scott M., Hwa T. Bacterial growth laws and their applications. Curr Opin Biotechnol 2011, 22:559-565.
-
(2011)
Curr Opin Biotechnol
, vol.22
, pp. 559-565
-
-
Scott, M.1
Hwa, T.2
-
25
-
-
0014413357
-
Chromosome replication and division cycle of Escherichia coli B/r
-
Cooper S., Helmstetter C.E. Chromosome replication and division cycle of Escherichia coli B/r. J Mol Biol 1968, 31:519-540.
-
(1968)
J Mol Biol
, vol.31
, pp. 519-540
-
-
Cooper, S.1
Helmstetter, C.E.2
-
26
-
-
84868289569
-
Gene location and DNA density determine transcription factor distributions in Escherichia coli
-
Kuhlman T.E., Cox E.C. Gene location and DNA density determine transcription factor distributions in Escherichia coli. Mol Syst Biol 2012, 8:610.
-
(2012)
Mol Syst Biol
, vol.8
, pp. 610
-
-
Kuhlman, T.E.1
Cox, E.C.2
-
27
-
-
79957623871
-
Growth-rate dependence reveals design principles of plasmid copy number control
-
Klumpp S. Growth-rate dependence reveals design principles of plasmid copy number control. PLoS One 2011, 6:e20403.
-
(2011)
PLoS One
, vol.6
-
-
Klumpp, S.1
-
28
-
-
0022528982
-
Effect of the bacterial growth rate on replication control of plasmid pBR322 in Escherichia coli
-
Lin-Chao S., Bremer H. Effect of the bacterial growth rate on replication control of plasmid pBR322 in Escherichia coli. Mol Gen Genet 1986, 203:143-149.
-
(1986)
Mol Gen Genet
, vol.203
, pp. 143-149
-
-
Lin-Chao, S.1
Bremer, H.2
-
29
-
-
73449149110
-
Invariant distribution of promoter activities in Escherichia coli
-
Zaslaver A., Kaplan S., Bren A., Jinich A., Mayo A., Dekel E., Alon U., Itzkovitz S. Invariant distribution of promoter activities in Escherichia coli. PLoS Comput Biol 2009, 5:e1000545.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Zaslaver, A.1
Kaplan, S.2
Bren, A.3
Jinich, A.4
Mayo, A.5
Dekel, E.6
Alon, U.7
Itzkovitz, S.8
-
30
-
-
84873877553
-
Shared control of gene expression in bacteria by transcription factors and global physiology of the cell
-
Berthoumieux S., de Jong H., Baptist G., Pinel C., Ranquet C., Ropers D., Geiselmann J. Shared control of gene expression in bacteria by transcription factors and global physiology of the cell. Mol Syst Biol 2013, 9:634.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 634
-
-
Berthoumieux, S.1
de Jong, H.2
Baptist, G.3
Pinel, C.4
Ranquet, C.5
Ropers, D.6
Geiselmann, J.7
-
31
-
-
84876548566
-
Dissecting specific and global transcriptional regulation of bacterial gene expression
-
Gerosa L., Kochanowski K., Heinemann M., Sauer U. Dissecting specific and global transcriptional regulation of bacterial gene expression. Mol Syst Biol 2013, 9:658.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 658
-
-
Gerosa, L.1
Kochanowski, K.2
Heinemann, M.3
Sauer, U.4
-
32
-
-
0036532226
-
Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability
-
Ferrell J.E. Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Curr Opin Cell Biol 2002, 14:140-148.
-
(2002)
Curr Opin Cell Biol
, vol.14
, pp. 140-148
-
-
Ferrell, J.E.1
-
33
-
-
33645073688
-
Phenotypic variation in bacteria: the role of feedback regulation
-
Smits W.K., Kuipers O.P., Veening J.W. Phenotypic variation in bacteria: the role of feedback regulation. Nat Rev Microbiol 2006, 4:259-271.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 259-271
-
-
Smits, W.K.1
Kuipers, O.P.2
Veening, J.W.3
-
34
-
-
4644343922
-
Bacterial persistence as a phenotypic switch
-
Balaban N.Q., Merrin J., Chait R., Kowalik L., Leibler S. Bacterial persistence as a phenotypic switch. Science 2004, 305:1622-1625.
-
(2004)
Science
, vol.305
, pp. 1622-1625
-
-
Balaban, N.Q.1
Merrin, J.2
Chait, R.3
Kowalik, L.4
Leibler, S.5
-
35
-
-
84872241785
-
Bacterial persistence and toxin-antitoxin loci
-
Gerdes K., Maisonneuve E. Bacterial persistence and toxin-antitoxin loci. Annu Rev Microbiol 2012, 66:103-123.
-
(2012)
Annu Rev Microbiol
, vol.66
, pp. 103-123
-
-
Gerdes, K.1
Maisonneuve, E.2
-
36
-
-
84888791540
-
The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria
-
Deris J.B., Kim M., Zhang Z., Okano H., Hermsen R., Groisman A., Hwa T. The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria. Science 2013, 342:1237435.
-
(2013)
Science
, vol.342
, pp. 1237435
-
-
Deris, J.B.1
Kim, M.2
Zhang, Z.3
Okano, H.4
Hermsen, R.5
Groisman, A.6
Hwa, T.7
-
37
-
-
70350324632
-
Emergent bistability by a growth-modulating positive feedback circuit
-
Tan C., Marguet P., You L. Emergent bistability by a growth-modulating positive feedback circuit. Nat Chem Biol 2009, 5:842-848.
-
(2009)
Nat Chem Biol
, vol.5
, pp. 842-848
-
-
Tan, C.1
Marguet, P.2
You, L.3
-
38
-
-
84861108510
-
Mapping the environmental fitness landscape of a synthetic gene circuit
-
Nevozhay D., Adams R.M., Van Itallie E., Bennett M.R., Balazsi G. Mapping the environmental fitness landscape of a synthetic gene circuit. PLoS Comput Biol 2012, 8:e1002480.
-
(2012)
PLoS Comput Biol
, vol.8
-
-
Nevozhay, D.1
Adams, R.M.2
Van Itallie, E.3
Bennett, M.R.4
Balazsi, G.5
-
39
-
-
84879728880
-
Molecular mechanisms of multiple toxin-antitoxin systems are coordinated to govern the persister phenotype
-
Fasani R.A., Savageau M.A. Molecular mechanisms of multiple toxin-antitoxin systems are coordinated to govern the persister phenotype. Proc Natl Acad Sci U S A 2013, 110:E2528-E2537.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
-
-
Fasani, R.A.1
Savageau, M.A.2
-
40
-
-
80052016172
-
Bacterial persistence by RNA endonucleases
-
Maisonneuve E., Shakespeare L.J., Jorgensen M.G., Gerdes K. Bacterial persistence by RNA endonucleases. Proc Natl Acad Sci U S A 2011, 108:13206-13211.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 13206-13211
-
-
Maisonneuve, E.1
Shakespeare, L.J.2
Jorgensen, M.G.3
Gerdes, K.4
-
41
-
-
84877649401
-
Population dynamics of bacterial persistence
-
Patra P., Klumpp S. Population dynamics of bacterial persistence. PLoS One 2013, 8:e62814.
-
(2013)
PLoS One
, vol.8
-
-
Patra, P.1
Klumpp, S.2
-
42
-
-
84873183509
-
Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli
-
Hofsteenge N., van Nimwegen E., Silander O.K. Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli. BMC Microbiol 2013, 13:25.
-
(2013)
BMC Microbiol
, vol.13
, pp. 25
-
-
Hofsteenge, N.1
van Nimwegen, E.2
Silander, O.K.3
-
43
-
-
79952214973
-
Synthetic circuit identifies subpopulations with sustained memory of DNA damage
-
Burrill D.R., Silver P.A. Synthetic circuit identifies subpopulations with sustained memory of DNA damage. Genes Dev 2011, 25:434-439.
-
(2011)
Genes Dev
, vol.25
, pp. 434-439
-
-
Burrill, D.R.1
Silver, P.A.2
-
44
-
-
0003066510
-
Studies on the role of ribonucleic acid in the growth of bacteria
-
Neidhardt F.C., Magasanik B. Studies on the role of ribonucleic acid in the growth of bacteria. Biochim Biophys Acta 1960, 42:99-116.
-
(1960)
Biochim Biophys Acta
, vol.42
, pp. 99-116
-
-
Neidhardt, F.C.1
Magasanik, B.2
-
45
-
-
84885773167
-
Molecular crowding limits translation and cell growth
-
Klumpp S., Scott M., Pedersen S., Hwa T. Molecular crowding limits translation and cell growth. Proc Natl Acad Sci U S A 2013, 110:16754-16759.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 16754-16759
-
-
Klumpp, S.1
Scott, M.2
Pedersen, S.3
Hwa, T.4
-
46
-
-
0041669435
-
Control of rRNA expression by small molecules is dynamic and nonredundant
-
Murray H.D., Schneider D.A., Gourse R.L. Control of rRNA expression by small molecules is dynamic and nonredundant. Mol Cell 2003, 12:125-134.
-
(2003)
Mol Cell
, vol.12
, pp. 125-134
-
-
Murray, H.D.1
Schneider, D.A.2
Gourse, R.L.3
-
47
-
-
79551662182
-
PpGpp is the major source of growth rate control in E. coli
-
Potrykus K., Murphy H., Philippe N., Cashel M. ppGpp is the major source of growth rate control in E. coli. Environ Microbiol 2011, 13:563-575.
-
(2011)
Environ Microbiol
, vol.13
, pp. 563-575
-
-
Potrykus, K.1
Murphy, H.2
Philippe, N.3
Cashel, M.4
-
48
-
-
0002722139
-
An analysis of bacterial growth
-
Maaloe O. An analysis of bacterial growth. Develop Biol Suppl 1969, 3:33-58.
-
(1969)
Develop Biol Suppl
, vol.3
, pp. 33-58
-
-
Maaloe, O.1
-
49
-
-
84881663369
-
Coordination of bacterial proteome with metabolism by cyclic AMP signalling
-
You C., Okano H., Hui S., Zhang Z., Kim M., Gunderson C.W., Wang Y.P., Lenz P., Yan D., Hwa T. Coordination of bacterial proteome with metabolism by cyclic AMP signalling. Nature 2013, 500:301-306.
-
(2013)
Nature
, vol.500
, pp. 301-306
-
-
You, C.1
Okano, H.2
Hui, S.3
Zhang, Z.4
Kim, M.5
Gunderson, C.W.6
Wang, Y.P.7
Lenz, P.8
Yan, D.9
Hwa, T.10
-
50
-
-
84860487758
-
Multidimensional optimality of microbial metabolism
-
Schuetz R., Zamboni N., Zampieri M., Heinemann M., Sauer U. Multidimensional optimality of microbial metabolism. Science 2012, 336:601-604.
-
(2012)
Science
, vol.336
, pp. 601-604
-
-
Schuetz, R.1
Zamboni, N.2
Zampieri, M.3
Heinemann, M.4
Sauer, U.5
-
51
-
-
84861663597
-
Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space
-
Shoval O., Sheftel H., Shinar G., Hart Y., Ramote O., Mayo A., Dekel E., Kavanagh K., Alon U. Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space. Science 2012, 336:1157-1160.
-
(2012)
Science
, vol.336
, pp. 1157-1160
-
-
Shoval, O.1
Sheftel, H.2
Shinar, G.3
Hart, Y.4
Ramote, O.5
Mayo, A.6
Dekel, E.7
Kavanagh, K.8
Alon, U.9
-
52
-
-
0027236999
-
Transcriptional regulation by cAMP and its receptor protein
-
Kolb A., Busby S., Buc H., Garges S., Adhya S. Transcriptional regulation by cAMP and its receptor protein. Annu Rev Biochem 1993, 62:749-795.
-
(1993)
Annu Rev Biochem
, vol.62
, pp. 749-795
-
-
Kolb, A.1
Busby, S.2
Buc, H.3
Garges, S.4
Adhya, S.5
-
53
-
-
81355127364
-
Alpha-Ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition
-
Doucette C.D., Schwab D.J., Wingreen N.S., Rabinowitz J.D. alpha-Ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition. Nat Chem Biol 2011, 7:894-901.
-
(2011)
Nat Chem Biol
, vol.7
, pp. 894-901
-
-
Doucette, C.D.1
Schwab, D.J.2
Wingreen, N.S.3
Rabinowitz, J.D.4
-
54
-
-
84867030643
-
Need-based activation of ammonium uptake in Escherichia coli
-
Kim M., Zhang Z., Okano H., Yan D., Groisman A., Hwa T. Need-based activation of ammonium uptake in Escherichia coli. Mol Syst Biol 2012, 8:616.
-
(2012)
Mol Syst Biol
, vol.8
, pp. 616
-
-
Kim, M.1
Zhang, Z.2
Okano, H.3
Yan, D.4
Groisman, A.5
Hwa, T.6
-
56
-
-
84881663190
-
Metabolite turns master regulator
-
Rabinowitz J.D., Silhavy T.J. Metabolite turns master regulator. Nature 2013, 500:283-284.
-
(2013)
Nature
, vol.500
, pp. 283-284
-
-
Rabinowitz, J.D.1
Silhavy, T.J.2
-
57
-
-
0028907619
-
Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction
-
Dong H., Nilsson L., Kurland C.G. Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction. J Bacteriol 1995, 177:1497-1504.
-
(1995)
J Bacteriol
, vol.177
, pp. 1497-1504
-
-
Dong, H.1
Nilsson, L.2
Kurland, C.G.3
|