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Volumn 54, Issue 2, 2015, Pages 250-259

Changes in pH and NADPH regulate the DNA binding activity of neuronal PAS domain protein 2, a mammalian circadian transcription factor

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOMOLECULES; CARBON MONOXIDE; CLOCKS; DNA; ELECTROPHORETIC MOBILITY; MAMMALS; PROTEINS; TRANSCRIPTION FACTORS;

EID: 84922309510     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi5008518     Document Type: Article
Times cited : (17)

References (48)
  • 1
    • 33749031807 scopus 로고    scopus 로고
    • Molecular components of the mammalian circadian clock
    • Ko, C. H. and Takahashi, J. S. (2006) Molecular components of the mammalian circadian clock Hum. Mol. Genet. 15, 271-277
    • (2006) Hum. Mol. Genet. , vol.15 , pp. 271-277
    • Ko, C.H.1    Takahashi, J.S.2
  • 2
    • 34548660850 scopus 로고    scopus 로고
    • Mammalian circadian signaling networks and therapeutic targets
    • Liu, A. C., Lewis, W. G., and Kay, S. A. (2007) Mammalian circadian signaling networks and therapeutic targets Nat. Chem. Biol. 3, 630-639
    • (2007) Nat. Chem. Biol. , vol.3 , pp. 630-639
    • Liu, A.C.1    Lewis, W.G.2    Kay, S.A.3
  • 3
    • 84880406921 scopus 로고    scopus 로고
    • Molecular components of the mammalian circadian clock
    • Buhr, E. D. and Takahashi, J. S. (2013) Molecular components of the mammalian circadian clock Handb. Exp. Pharmacol. 217, 3-27
    • (2013) Handb. Exp. Pharmacol. , vol.217 , pp. 3-27
    • Buhr, E.D.1    Takahashi, J.S.2
  • 6
    • 0037178787 scopus 로고    scopus 로고
    • The orphan nuclear receptor REV-ERBα controls circadian transcription within the positive limb of the mammalian circadian oscillator
    • Preitner, N., Damiola, F., Molina, L. L., Zakany, J., Duboule, D., Albrecht, U., and Schibler, U. (2002) The orphan nuclear receptor REV-ERBα controls circadian transcription within the positive limb of the mammalian circadian oscillator Cell 110, 251-260
    • (2002) Cell , vol.110 , pp. 251-260
    • Preitner, N.1    Damiola, F.2    Molina, L.L.3    Zakany, J.4    Duboule, D.5    Albrecht, U.6    Schibler, U.7
  • 7
    • 22344445394 scopus 로고    scopus 로고
    • The orphan nuclear receptor Rev-erbα recruits the N-CoR/histone deacetylase 3 corepressor to regulate the circadian Bmal1 gene
    • Yin, L. and Lazar, M. A. (2005) The orphan nuclear receptor Rev-erbα recruits the N-CoR/histone deacetylase 3 corepressor to regulate the circadian Bmal1 gene Mol. Endocrinol. 19, 1452-1459
    • (2005) Mol. Endocrinol. , vol.19 , pp. 1452-1459
    • Yin, L.1    Lazar, M.A.2
  • 8
    • 79955632973 scopus 로고    scopus 로고
    • The REV-ERBs and RORs: Molecular links between circadian rhythms and lipid homeostasis
    • Solt, L. A., Kojetin, D. J., and Burris, T. P. (2011) The REV-ERBs and RORs: Molecular links between circadian rhythms and lipid homeostasis Future Med. Chem. 3, 623-638
    • (2011) Future Med. Chem. , vol.3 , pp. 623-638
    • Solt, L.A.1    Kojetin, D.J.2    Burris, T.P.3
  • 9
    • 84866888532 scopus 로고    scopus 로고
    • RORγ directly regulates the circadian expression of clock genes and downstream targets in vivo
    • Takeda, Y., Jothi, R., Birault, V., and Jetten, A. M. (2012) RORγ directly regulates the circadian expression of clock genes and downstream targets in vivo Nucleic Acids Res. 40, 8519-8535
    • (2012) Nucleic Acids Res. , vol.40 , pp. 8519-8535
    • Takeda, Y.1    Jothi, R.2    Birault, V.3    Jetten, A.M.4
  • 10
    • 78649687209 scopus 로고    scopus 로고
    • Circadian integration of metabolism and energetics
    • Bass, J. and Takahashi, J. S. (2010) Circadian integration of metabolism and energetics Science 330, 1349-1354
    • (2010) Science , vol.330 , pp. 1349-1354
    • Bass, J.1    Takahashi, J.S.2
  • 11
    • 80052048021 scopus 로고    scopus 로고
    • Feeding cues and injected nutrients induce acute expression of multiple clock genes in the mouse liver
    • Oike, H., Nagai, K., Fukushima, T., Ishida, N., and Kobori, M. (2011) Feeding cues and injected nutrients induce acute expression of multiple clock genes in the mouse liver PLoS One 6, e23709
    • (2011) PLoS One , vol.6 , pp. 23709
    • Oike, H.1    Nagai, K.2    Fukushima, T.3    Ishida, N.4    Kobori, M.5
  • 12
    • 84864309100 scopus 로고    scopus 로고
    • Clocks, metabolism, and the epigenome
    • Feng, D. and Lazar, M. A. (2012) Clocks, metabolism, and the epigenome Mol. Cell 47, 158-167
    • (2012) Mol. Cell , vol.47 , pp. 158-167
    • Feng, D.1    Lazar, M.A.2
  • 13
    • 67650094963 scopus 로고    scopus 로고
    • Roles of CLOCK phosphorylation in suppression of E-box dependent transcription
    • Yoshitane, H., Takao, T., Satomi, Y., Du, N. H., Okano, T., and Fukada, Y. (2009) Roles of CLOCK phosphorylation in suppression of E-box dependent transcription Mol. Cell. Biol. 29, 3675-3686
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 3675-3686
    • Yoshitane, H.1    Takao, T.2    Satomi, Y.3    Du, N.H.4    Okano, T.5    Fukada, Y.6
  • 16
    • 22844432019 scopus 로고    scopus 로고
    • SCFβ-TRCP controls clock-dependent transcription via casein kinase 1-dependent degradation of the mammalian period-1 (Per1) protein
    • Shirogane, T., Jin, J., Ang, X. L., and Harper, J. W. (2005) SCFβ-TRCP controls clock-dependent transcription via casein kinase 1-dependent degradation of the mammalian period-1 (Per1) protein J. Biol. Chem. 280, 26863-26872
    • (2005) J. Biol. Chem. , vol.280 , pp. 26863-26872
    • Shirogane, T.1    Jin, J.2    Ang, X.L.3    Harper, J.W.4
  • 19
    • 77951897767 scopus 로고    scopus 로고
    • Systems biology of mammalian circadian clocks
    • Ukai, H. and Ueda, H. R. (2010) Systems biology of mammalian circadian clocks Annu. Rev. Physiol. 72, 579-603
    • (2010) Annu. Rev. Physiol. , vol.72 , pp. 579-603
    • Ukai, H.1    Ueda, H.R.2
  • 21
    • 0035919618 scopus 로고    scopus 로고
    • NPAS2: An analog of Clock operative in the mammalian forebrain
    • Reick, M., Garcia, J. A., Dudley, C., and McKnight, S. L. (2001) NPAS2: An analog of Clock operative in the mammalian forebrain Science 293, 506-509
    • (2001) Science , vol.293 , pp. 506-509
    • Reick, M.1    Garcia, J.A.2    Dudley, C.3    McKnight, S.L.4
  • 22
    • 34247526990 scopus 로고    scopus 로고
    • CLOCK and NPAS2 have overlapping roles in the suprachiasmatic circadian clock
    • DeBruyne, J. P., Weaver, D. R., and Reppert, S. M. (2007) CLOCK and NPAS2 have overlapping roles in the suprachiasmatic circadian clock Nat. Neurosci. 10, 543-545
    • (2007) Nat. Neurosci. , vol.10 , pp. 543-545
    • Debruyne, J.P.1    Weaver, D.R.2    Reppert, S.M.3
  • 24
    • 0032510778 scopus 로고    scopus 로고
    • The basic-helix-loop-helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors
    • Hogenesch, J. B., Gu, Y. Z., Jain, S., and Bradfield, C. A. (1998) The basic-helix-loop-helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors Proc. Natl. Acad. Sci. U.S.A. 95, 5474-5479
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 5474-5479
    • Hogenesch, J.B.1    Gu, Y.Z.2    Jain, S.3    Bradfield, C.A.4
  • 26
    • 53349145764 scopus 로고    scopus 로고
    • The circadian gene NPAS2, a putative tumor suppressor, is involved in DNA damage response
    • Hoffman, A. E., Zheng, T., Ba, Y., and Zhu, Y. (2008) The circadian gene NPAS2, a putative tumor suppressor, is involved in DNA damage response Mol. Cancer Res. 6, 1461-1468
    • (2008) Mol. Cancer Res. , vol.6 , pp. 1461-1468
    • Hoffman, A.E.1    Zheng, T.2    Ba, Y.3    Zhu, Y.4
  • 28
    • 69549127974 scopus 로고    scopus 로고
    • Cancer-related transcriptional targets of the circadian gene NPAS2 identified by genome-wide ChIP-on-ChIP analysis
    • Yi, C. H., Zheng, T., Leaderer, D., Hoffman, A., and Zhu, Y. (2009) Cancer-related transcriptional targets of the circadian gene NPAS2 identified by genome-wide ChIP-on-ChIP analysis Cancer Lett. 284, 149-156
    • (2009) Cancer Lett. , vol.284 , pp. 149-156
    • Yi, C.H.1    Zheng, T.2    Leaderer, D.3    Hoffman, A.4    Zhu, Y.5
  • 29
    • 0035919479 scopus 로고    scopus 로고
    • Regulation of CLOCK and NPAS2 DNA binding by the redox state of NAD cofactors
    • Rutter, J., Reick, M., Wu, L. C., and McKnight, S. L. (2001) Regulation of CLOCK and NPAS2 DNA binding by the redox state of NAD cofactors Science 293, 510-514
    • (2001) Science , vol.293 , pp. 510-514
    • Rutter, J.1    Reick, M.2    Wu, L.C.3    McKnight, S.L.4
  • 30
    • 84880941452 scopus 로고    scopus 로고
    • Effects of NAD(P)H and its derivatives on the DNA-binding activity of NPAS2, a mammalian circadian transcription factor
    • Yoshii, K., Ishijima, S., and Sagami, I. (2013) Effects of NAD(P)H and its derivatives on the DNA-binding activity of NPAS2, a mammalian circadian transcription factor Biochem. Biophys. Res. Commun. 437, 386-391
    • (2013) Biochem. Biophys. Res. Commun. , vol.437 , pp. 386-391
    • Yoshii, K.1    Ishijima, S.2    Sagami, I.3
  • 32
    • 20444374458 scopus 로고    scopus 로고
    • CO-dependent activity-controlling mechanism of heme-containing CO-sensor protein, neuronal PAS domain protein 2
    • Uchida, T., Sato, E., Sato, A., Sagami, I., Shimizu, T., and Kitagawa, T. (2005) CO-dependent activity-controlling mechanism of heme-containing CO-sensor protein, neuronal PAS domain protein 2 J. Biol. Chem. 280, 21358-21368
    • (2005) J. Biol. Chem. , vol.280 , pp. 21358-21368
    • Uchida, T.1    Sato, E.2    Sato, A.3    Sagami, I.4    Shimizu, T.5    Kitagawa, T.6
  • 33
    • 57149098568 scopus 로고    scopus 로고
    • Activation of TGF-β/activin signalling resets the circadian clock through rapid induction of Dec1 transcripts
    • Kon, N., Hirota, T., Kawamoto, T., Kato, Y., Tsubota, T., and Fukada, Y. (2008) Activation of TGF-β/activin signalling resets the circadian clock through rapid induction of Dec1 transcripts Nat. Cell Biol. 10, 1463-1469
    • (2008) Nat. Cell Biol. , vol.10 , pp. 1463-1469
    • Kon, N.1    Hirota, T.2    Kawamoto, T.3    Kato, Y.4    Tsubota, T.5    Fukada, Y.6
  • 35
    • 0024286746 scopus 로고
    • Regulation of intracellular pH in eukaryotic cells
    • Madshus, I. H. (1988) Regulation of intracellular pH in eukaryotic cells Biochem. J. 250, 1-8
    • (1988) Biochem. J. , vol.250 , pp. 1-8
    • Madshus, I.H.1
  • 38
    • 39549117367 scopus 로고    scopus 로고
    • Effects of mutations in the heme domain on the transcriptional activity and DNA-binding activity of NPAS2
    • Ishida, M., Ueha, T., and Sagami, I. (2008) Effects of mutations in the heme domain on the transcriptional activity and DNA-binding activity of NPAS2 Biochem. Biophys. Res. Commun. 368, 292-297
    • (2008) Biochem. Biophys. Res. Commun. , vol.368 , pp. 292-297
    • Ishida, M.1    Ueha, T.2    Sagami, I.3
  • 39
    • 33646682128 scopus 로고    scopus 로고
    • Spectroscopic and DNA-binding characterization of the isolated heme-bound basic helix-loop-helix-PAS-A domain of neuronal PAS protein 2 (NPAS2), a transcription activator protein associated with circadian rhythms
    • Mukaiyama, Y., Uchida, T., Sato, E., Sasaki, A., Sato, Y., Igarashi, J., Kurokawa, H., Sagami, I., Kitagawa, T., and Shimizu, T. (2006) Spectroscopic and DNA-binding characterization of the isolated heme-bound basic helix-loop-helix-PAS-A domain of neuronal PAS protein 2 (NPAS2), a transcription activator protein associated with circadian rhythms FEBS J. 273, 2528-2539
    • (2006) FEBS J. , vol.273 , pp. 2528-2539
    • Mukaiyama, Y.1    Uchida, T.2    Sato, E.3    Sasaki, A.4    Sato, Y.5    Igarashi, J.6    Kurokawa, H.7    Sagami, I.8    Kitagawa, T.9    Shimizu, T.10
  • 40
    • 84863407362 scopus 로고    scopus 로고
    • Effects of the bHLH domain on axial coordination of heme in the PAS-A domain of neuronal PAS domain protein 2 (NPAS2): Conversion from His119/Cys170 coordination to His 119/His171 coordination
    • Uchida, T., Sagami, I., Shimizu, T., Ishimori, K., and Kitagawa, T. (2012) Effects of the bHLH domain on axial coordination of heme in the PAS-A domain of neuronal PAS domain protein 2 (NPAS2): Conversion from His119/Cys170 coordination to His 119/His171 coordination J. Inorg. Biochem. 108, 188-195
    • (2012) J. Inorg. Biochem. , vol.108 , pp. 188-195
    • Uchida, T.1    Sagami, I.2    Shimizu, T.3    Ishimori, K.4    Kitagawa, T.5
  • 41
    • 1242339670 scopus 로고    scopus 로고
    • Contribution of the Per/Arnt/Sim (PAS) domains to DNA binding by the basic helix-loop-helix PAS transcriptional regulators
    • Chapman-Smith, A., Lutwyche, J. K., and Whitelaw, M. L. (2004) Contribution of the Per/Arnt/Sim (PAS) domains to DNA binding by the basic helix-loop-helix PAS transcriptional regulators J. Biol. Chem. 279, 5353-5362
    • (2004) J. Biol. Chem. , vol.279 , pp. 5353-5362
    • Chapman-Smith, A.1    Lutwyche, J.K.2    Whitelaw, M.L.3
  • 43
    • 84873738229 scopus 로고    scopus 로고
    • Intermolecular recognition revealed by the complex structure of human CLOCK-BMAL1 basic helix-loop-helix domains with E-box DNA
    • Wang, Z., Wu, Y., Li, L., and Su, X. D. (2013) Intermolecular recognition revealed by the complex structure of human CLOCK-BMAL1 basic helix-loop-helix domains with E-box DNA Cell Res. 23, 213-224
    • (2013) Cell Res. , vol.23 , pp. 213-224
    • Wang, Z.1    Wu, Y.2    Li, L.3    Su, X.D.4
  • 47
    • 0016744282 scopus 로고
    • Creatine kinase equilibrium and lactate content compared with muscle pH in tissue samples obtained after isometric exercise
    • Sahlin, K., Harris, R. C., and Hultman, E. (1975) Creatine kinase equilibrium and lactate content compared with muscle pH in tissue samples obtained after isometric exercise Biochem. J. 152, 173-180
    • (1975) Biochem. J. , vol.152 , pp. 173-180
    • Sahlin, K.1    Harris, R.C.2    Hultman, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.