Effects of the bHLH domain on axial coordination of heme in the PAS-A domain of neuronal PAS domain protein 2 (NPAS2): Conversion from His119/Cys170 coordination to His119/His171 coordination

Journal of Inorganic Biochemistry

Volumn 108, Issue , 2012, Pages 188-195

  Uchida, Takeshi ^a,b   Sagami, Ikuko ^c   Shimizu, Toru ^d   Ishimori, Koichiro ^a   Kitagawa, Teizo ^b,e  

^a HOKKAIDO UNIVERSITY   (Japan)

^b OKAZAKI INSTITUTE FOR INTEGRATIVE BIOSCIENCE   (Japan)

^c KYOTO PREFECTURAL UNIVERSITY   (Japan)

^d TOHOKU UNIVERSITY   (Japan)

^e UNIVERSITY OF HYOGO   (Japan)

Author keywords

Gas sensor protein; Heme; PAS domain; Resonance Raman; Transcription factor

Indexed keywords

BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR; CYSTEINE; FERRIC ION; FERROUS ION; HEME; HISTIDINE; NEURONAL PAS DOMAIN PROTEIN 2; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; BINDING SITE; CONFERENCE PAPER; CONFORMATIONAL TRANSITION; DNA BINDING; E BOX ELEMENT; PH; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN STRUCTURE; SEQUENCE ALIGNMENT;

CYSTEINE; HEME; HISTIDINE; PROTEIN STRUCTURE, TERTIARY; TRANSCRIPTION FACTORS;

UCHIDA;

EID: 84863407362     PISSN: 01620134     EISSN: 18733344     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2011.12.005     Document Type: Conference Paper

References (33)

1. E.M. Dioum, J. Rutter, J.R. Tuckerman, G. Gonzalez, M.A. Gilles-Gonzalez, and S.L. McKnight Science 298 2002 2385 2387
2. J. Rutter, M. Reick, L.C. Wu, and S.L. McKnight Science 293 2001 510 514
3. Y.D. Zhou, M. Barnard, H. Tian, X. Li, H.Z. Ring, U. Francke, J. Shelton, J. Richardson, D.W. Russell, and S.L. McKnight Proc. Natl. Acad. Sci. U. S. A. 94 1997 713 718
4. T. Uchida, E. Sato, A. Sato, I. Sagami, T. Shimizu, and T. Kitagawa J. Biol. Chem. 280 2005 21358 21368
5. S. Aono, K. Ohkubo, T. Matsuo, and H. Nakajima J. Biol. Chem. 273 1998 25757 25764
6. Y. Mukaiyama, T. Uchida, E. Sato, A. Sasaki, Y. Sato, J. Igarashi, H. Kurokawa, I. Sagami, T. Kitagawa, and T. Shimizu FEBS J. 273 2006 2528 2539
7. T. Uchida, and T. Kitagawa Acc. Chem. Res. 38 2005 662 670
8. E.M. Boon, S.H. Huang, and M.A. Marletta Nat. Chem. Biol. 1 2005 53 59
9. E. Martin, V. Berka, E. Bogatenkova, F. Murad, and A.L. Tsai J. Biol. Chem. 281 2006 27836 27845
10. L.O. Narhi, and A.J. Fulco J. Biol. Chem. 261 1986 7160 7169
11. L.O. Narhi, and A.J. Fulco J. Biol. Chem. 262 1987 6683 6690
12. A.W. Munro, J.G. Lindsay, J.R. Coggins, S.M. Kelly, and N.C. Price FEBS Lett. 343 1994 70 74
13. M. Abe, T. Kitagawa, and Y. Kyogoku J. Chem. Phys. 69 1978 4526 4534
14. T.G. Spiro, and X.-Y. Li T.G. Spiro, Biological Applications of Raman Spectroscopy Resonance Raman Spectroscopy of Metalloporphyrin vol. 3 1988 John Wiley & Sons, Inc. New York 1 37
15. T. Kitagawa T.G. Spiro, Biological Applications of Raman Spectroscopy Heme Protein Structure and the Iron-Histidine Stretching Mode vol. 3 1988 John Wiley & Sons, Inc. New York 97 131
16. E.S. Peterson, J.M. Friedman, E.Y. Chien, and S.G. Sligar Biochemistry 37 1998 12301 12319
17. R. Koudo, H. Kurokawa, E. Sato, J. Igarashi, T. Uchida, I. Sagami, T. Kitagawa, and T. Shimizu FEBS J. 272 2005 4153 4162
18. P.M. Champion, B.R. Stallard, G.C. Wagner, and I.C. Gunsalus J. Am. Chem. Soc. 104 1982 5469 5472
19. O. Bangcharoenpaurpong, P.M. Champion, K.S. Hall, and L.P. Hager Biochemistry 25 1986 2374 2378
20. H. Ishikawa, M. Nakagaki, A. Bamba, T. Uchida, H. Hori, M.R. O'Brian, K. Iwai, and K. Ishimori Biochemistry 50 2011 1016 1022
21. M. Ishida, T. Ueha, and I. Sagami Biochem. Biophys. Res. Commun. 368 2008 292 297
22. S. Crosson, S. Rajagopal, and K. Moffat Biochemistry 42 2003 2 10
23. M.A. Cusanovich, and T.E. Meyer Biochemistry 42 2003 4759 4770
24. H. Kurokawa, D.S. Lee, M. Watanabe, I. Sagami, B. Mikami, C.S. Raman, and T. Shimizu J. Biol. Chem. 279 2004 20186 20193
25. G.E. Borgstahl, D.R. Williams, and E.D. Getzoff Biochemistry 34 1995 6278 6287
26. U.K. Genick, G.E. Borgstahl, K. Ng, Z. Ren, C. Pradervand, P.M. Burke, V. Srajer, T.Y. Teng, W. Schildkamp, D.E. McRee, K. Moffat, and E.D. Getzoff Science 275 1997 1471 1475
27. P. Dux, G. Rubinstenn, G.W. Vuister, R. Boelens, F.A. Mulder, K. Hard, W.D. Hoff, A.R. Kroon, W. Crielaard, K.J. Hellingwerf, and R. Kaptein Biochemistry 37 1998 12689 12699
28. Z. Ren, B. Perman, V. Srajer, T.Y. Teng, C. Pradervand, D. Bourgeois, F. Schotte, T. Ursby, R. Kort, M. Wulff, and K. Moffat Biochemistry 40 2001 13788 13801
29. G. Rubinstenn, G.W. Vuister, F.A. Mulder, P.E. Dux, R. Boelens, K.J. Hellingwerf, and R. Kaptein Nat. Struct. Biol. 5 1998 568 570
30. S. Crosson, and K. Moffat Proc. Natl. Acad. Sci. U. S. A. 98 2001 2995 3000
31. S. Crosson, and K. Moffat Plant Cell 14 2002 1067 1075
32. T.S. Li, M.L. Quillin, G.N. Phillips, and J.S. Olson Biochemistry 33 1994 1433 1446
33. T.G. Spiro, and I.H. Wasbotten J. Inorg. Biochem. 99 2005 34 44