-
1
-
-
0037118077
-
Circadian rhythms from fies to human
-
Panda S, Hogenesch JB, Kay SA. Circadian rhythms from fies to human. Nature 2002; 417:329-335.
-
(2002)
Nature
, vol.417
, pp. 329-335
-
-
Panda, S.1
Hogenesch, J.B.2
Kay, S.A.3
-
2
-
-
0037194790
-
Coordination of circadian timing in mammals
-
Reppert SM, Weaver DR. Coordination of circadian timing in mammals. Nature 2002; 418:935-941.
-
(2002)
Nature
, vol.418
, pp. 935-941
-
-
Reppert, S.M.1
Weaver, D.R.2
-
4
-
-
77649138576
-
Circadian rhythms and metabolic syndrome: From experimental genetics to human disease
-
Maury E, Ramsey KM, Bass J. Circadian rhythms and metabolic syndrome: from experimental genetics to human disease. Circ Res 2010; 106:447-462.
-
(2010)
Circ Res
, vol.106
, pp. 447-462
-
-
Maury, E.1
Ramsey, K.M.2
Bass, J.3
-
5
-
-
0033593306
-
Molecular bases for circadian clocks
-
Dunlap JC. Molecular bases for circadian clocks. Cell 1999; 96:271-290.
-
(1999)
Cell
, vol.96
, pp. 271-290
-
-
Dunlap, J.C.1
-
6
-
-
77958504804
-
Clocks not winding down: Unravelling circadian networks
-
Zhang EE, Kay SA. Clocks not winding down: unravelling circadian networks. Nat Rev Mol Cell Biol 2010; 11:764-776.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 764-776
-
-
Zhang, E.E.1
Kay, S.A.2
-
7
-
-
0032510778
-
The basic-helix-loop-helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors
-
Hogenesch JB, Gu YZ, Jain S, Bradfeld CA. The basic-helix-loop-helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors. Proc Natl Acad Sci USA 1998; 95:5474-5479.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5474-5479
-
-
Hogenesch, J.B.1
Gu, Y.Z.2
Jain, S.3
Bradfeld, C.A.4
-
8
-
-
0032486330
-
Role of the CLOCK protein in the mammalian circadian mechanism
-
Gekakis N, Staknis D, Nguyen HB, et al. Role of the CLOCK protein in the mammalian circadian mechanism. Science 1998; 280:1564-1569.
-
(1998)
Science
, vol.280
, pp. 1564-1569
-
-
Gekakis, N.1
Staknis, D.2
Nguyen, H.B.3
-
9
-
-
0033980393
-
Helix-loop-helix proteins: Regulators of transcription in eucaryotic organisms
-
Massari ME, Murre C. Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms. Mol Cell Biol 2000; 20:429-440.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 429-440
-
-
Massari, M.E.1
Murre, C.2
-
10
-
-
0028307093
-
Structure and function of helix-loop-helix proteins
-
Murre C, Bain G, van Dijk MA, et al. Structure and function of helix-loop-helix proteins. Biochim Biophys Acta 1994; 1218:129-135.
-
(1994)
Biochim Biophys Acta
, vol.1218
, pp. 129-135
-
-
Murre, C.1
Bain, G.2
Van Dijk, M.A.3
-
11
-
-
0035001937
-
The basic helix-loop-helix protein family: Comparative genomics and phylogenetic analysis
-
Ledent V, Vervoort M. The basic helix-loop-helix protein family: comparative genomics and phylogenetic analysis. Genome Res 2001; 11:754-770.
-
(2001)
Genome Res
, vol.11
, pp. 754-770
-
-
Ledent, V.1
Vervoort, M.2
-
12
-
-
0037669486
-
The circadian E-box: When perfect is not good enough
-
Munoz E, Baler R. The circadian E-box: when perfect is not good enough. Chronobiol Int 2003; 20:371-388.
-
(2003)
Chronobiol Int
, vol.20
, pp. 371-388
-
-
Munoz, E.1
Baler, R.2
-
13
-
-
0021928806
-
B lineage-specific interactions of an immunoglobulin enhancer with cellular factors in vivo
-
Ephrussi A, Church GM, Tonegawa S, Gilbert W. B lineage-specific interactions of an immunoglobulin enhancer with cellular factors in vivo. Science 1985; 227:134-140.
-
(1985)
Science
, vol.227
, pp. 134-140
-
-
Ephrussi, A.1
Church, G.M.2
Tonegawa, S.3
Gilbert, W.4
-
14
-
-
0024554495
-
A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins
-
Murre C, McCaw PS, Baltimore D. A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins. Cell 1989; 56:777-783.
-
(1989)
Cell
, vol.56
, pp. 777-783
-
-
Murre, C.1
McCaw, P.S.2
Baltimore, D.3
-
15
-
-
0024378079
-
Interactions between heterologous helix-loop-helix proteins generate complexes that bind specifcally to a common DNA sequence
-
Murre C, McCaw PS, Vaessin H, et al. Interactions between heterologous helix-loop-helix proteins generate complexes that bind specifcally to a common DNA sequence. Cell 1989; 58:537-544.
-
(1989)
Cell
, vol.58
, pp. 537-544
-
-
Murre, C.1
McCaw, P.S.2
Vaessin, H.3
-
16
-
-
0028865103
-
DNA binding speci-fcities and pairing rules of the Ah receptor, ARNT, and SIM proteins
-
Swanson HI, Chan WK, Bradfeld CA. DNA binding speci-fcities and pairing rules of the Ah receptor, ARNT, and SIM proteins. J Biol Chem 1995; 270:26292-26302.
-
(1995)
J Biol Chem
, vol.270
, pp. 26292-26302
-
-
Swanson, H.I.1
Chan, W.K.2
Bradfeld, C.A.3
-
17
-
-
0036682099
-
A transcription factor response element for gene expression during circadian night
-
Ueda HR, Chen W, Adachi A, et al. A transcription factor response element for gene expression during circadian night. Nature 2002; 418:534-539.
-
(2002)
Nature
, vol.418
, pp. 534-539
-
-
Ueda, H.R.1
Chen, W.2
Adachi, A.3
-
18
-
-
0037007625
-
Extensive and divergent circadian gene expression in liver and heart
-
Storch KF, Lipan O, Leykin I, et al. Extensive and divergent circadian gene expression in liver and heart. Nature 2002; 417:78-83.
-
(2002)
Nature
, vol.417
, pp. 78-83
-
-
Storch, K.F.1
Lipan, O.2
Leykin, I.3
-
19
-
-
18444414586
-
Coordinated transcription of key pathways in the mouse by the circadian clock
-
Panda S, Antoch MP, Miller BH, et al. Coordinated transcription of key pathways in the mouse by the circadian clock. Cell 2002; 109:307-320.
-
(2002)
Cell
, vol.109
, pp. 307-320
-
-
Panda, S.1
Antoch, M.P.2
Miller, B.H.3
-
20
-
-
20044396172
-
A noncanonical E-box enhancer drives mouse Period2 circadian oscillations in vivo
-
Yoo SH, Ko CH, Lowrey PL, et al. A noncanonical E-box enhancer drives mouse Period2 circadian oscillations in vivo. Proc Natl Acad Sci USA 2005; 102:2608-2613.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2608-2613
-
-
Yoo, S.H.1
Ko, C.H.2
Lowrey, P.L.3
-
21
-
-
79952255290
-
Genome-wide pro-fling of the core clock protein bmal1 targets reveals a strict relationship with metabolism
-
Hatanaka F, Matsubara C, Myung J, et al. Genome-wide pro-fling of the core clock protein BMAL1 targets reveals a strict relationship with metabolism. Mol Cell Biol 2010; 30:5636-5648.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 5636-5648
-
-
Hatanaka, F.1
Matsubara, C.2
Myung, J.3
-
22
-
-
79952261359
-
Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver
-
Rey G, Cesbron F, Rougemont J, Reinke H, Brunner M, Naef F. Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver. PLoS Biol 2011; 9:e1000595.
-
(2011)
PLoS Biol
, vol.9
-
-
Rey, G.1
Cesbron, F.2
Rougemont, J.3
Reinke, H.4
Brunner, M.5
Naef, F.6
-
23
-
-
39849084068
-
A direct repeat of E-box-like elements is required for cell-autonomous circadian rhythm of clock genes
-
Nakahata Y, Yoshida M, Takano A, et al. A direct repeat of E-box-like elements is required for cell-autonomous circadian rhythm of clock genes. BMC Mol Biol 2008; 9:1.
-
(2008)
BMC Mol Biol
, vol.9
, pp. 1
-
-
Nakahata, Y.1
Yoshida, M.2
Takano, A.3
-
24
-
-
84863751285
-
Crystal structure of the heterodimeric CLOCK:BMAL1 transcriptional activator complex
-
Huang N, Chelliah Y, Shan Y, et al. Crystal structure of the heterodimeric CLOCK:BMAL1 transcriptional activator complex. Science 2012; 337:189-194.
-
(2012)
Science
, vol.337
, pp. 189-194
-
-
Huang, N.1
Chelliah, Y.2
Shan, Y.3
-
25
-
-
0037462459
-
X-ray structures of Myc-Max and MadMax recognizing DNA: Molecular bases of regulation by proto-oncogenic transcription factors
-
Nair SK, Burley SK. X-ray structures of Myc-Max and MadMax recognizing DNA: molecular bases of regulation by proto-oncogenic transcription factors. Cell 2003; 112:193-205.
-
(2003)
Cell
, vol.112
, pp. 193-205
-
-
Nair, S.K.1
Burley, S.K.2
-
27
-
-
0031569798
-
The crystal structure of an intact human Max-DNA complex: New insights into mechanisms of transcriptional control
-
Brownlie P, Ceska T, Lamers M, et al. The crystal structure of an intact human Max-DNA complex: new insights into mechanisms of transcriptional control. Structure 1997; 5:509-520.
-
(1997)
Structure
, vol.5
, pp. 509-520
-
-
Brownlie, P.1
Ceska, T.2
Lamers, M.3
-
28
-
-
0032524465
-
Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 Å resolution
-
Parraga A, Bellsolell L, Ferre-D'Amare AR, Burley SK. Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 Å resolution. Structure 1998; 6:661-672.
-
(1998)
Structure
, vol.6
, pp. 661-672
-
-
Parraga, A.1
Bellsolell, L.2
Ferre-D'Amare, A.R.3
Burley, S.K.4
-
29
-
-
0028215362
-
Crystal structure of MyoD bHLH domain-DNA complex: Perspectives on DNA recognition and implications for transcriptional activation
-
Ma PC, Rould MA, Weintraub H, Pabo CO. Crystal structure of MyoD bHLH domain-DNA complex: perspectives on DNA recognition and implications for transcriptional activation. Cell 1994; 77:451-459.
-
(1994)
Cell
, vol.77
, pp. 451-459
-
-
Ma, P.C.1
Rould, M.A.2
Weintraub, H.3
Pabo, C.O.4
-
31
-
-
0030794453
-
Crystal structure of PHO4 bHLH domain-DNA complex: Fanking base recognition
-
Shimizu T, Toumoto A, Ihara K, et al. Crystal structure of PHO4 bHLH domain-DNA complex: fanking base recognition. EMBO J 1997; 16:4689-4697.
-
(1997)
EMBO J
, vol.16
, pp. 4689-4697
-
-
Shimizu, T.1
Toumoto, A.2
Ihara, K.3
-
32
-
-
37849019258
-
Crystal structure of E47-NeuroD1/beta2 bHLH domain-DNA complex: Heterodimer selectivity and DNA recognition
-
Longo A, Guanga GP, Rose RB. Crystal structure of E47-NeuroD1/beta2 bHLH domain-DNA complex: heterodimer selectivity and DNA recognition. Biochemistry 2008; 47:218-229.
-
(2008)
Biochemistry
, vol.47
, pp. 218-229
-
-
Longo, A.1
Guanga, G.P.2
Rose, R.B.3
-
33
-
-
84863751285
-
Crystal structure of the heterodimeric CLOCK:BMAL1 transcriptional activator complex
-
Huang N, Chelliah Y, Shan Y, et al. Crystal structure of the heterodimeric CLOCK:BMAL1 transcriptional activator complex. Science 2012; 337:189-194.
-
(2012)
Science
, vol.337
, pp. 189-194
-
-
Huang, N.1
Chelliah, Y.2
Shan, Y.3
-
34
-
-
0035919479
-
Regulation of clock and NPAS2 DNA binding by the redox state of NAD cofac-tors
-
Rutter J, Reick M, Wu LC, McKnight SL. Regulation of clock and NPAS2 DNA binding by the redox state of NAD cofac-tors. Science 2001; 293:510-514.
-
(2001)
Science
, vol.293
, pp. 510-514
-
-
Rutter, J.1
Reick, M.2
Wu, L.C.3
McKnight, S.L.4
-
35
-
-
65549128208
-
Circadian rhythms. A circadian loop asSIRTs itself
-
Wijnen H. Circadian rhythms. A circadian loop asSIRTs itself. Science 2009; 324:598-599.
-
(2009)
Science
, vol.324
, pp. 598-599
-
-
Wijnen, H.1
-
38
-
-
67650094963
-
Roles of CLOCK phosphorylation in suppression of E-box-dependent transcription
-
Yoshitane H, Takao T, Satomi Y, Du NH, Okano T, Fukada Y. Roles of CLOCK phosphorylation in suppression of E-box-dependent transcription. Mol Cell Biol 2009; 29:3675-3686.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 3675-3686
-
-
Yoshitane, H.1
Takao, T.2
Satomi, Y.3
Du, N.H.4
Okano, T.5
Fukada, Y.6
-
39
-
-
64049083872
-
CK2alpha phospho-rylates BMAL1 to regulate the mammalian clock
-
Tamaru T, Hirayama J, Isojima Y, et al. CK2alpha phospho-rylates BMAL1 to regulate the mammalian clock. Nat Struct Mol Biol 2009; 16:446-448.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 446-448
-
-
Tamaru, T.1
Hirayama, J.2
Isojima, Y.3
-
40
-
-
0033579464
-
Sequence and structure-based prediction of eukaryotic protein phosphorylation sites
-
Blom N, Gammeltoft S, Brunak S. Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. J Mol Biol 1999; 294:1351-1362.
-
(1999)
J Mol Biol
, vol.294
, pp. 1351-1362
-
-
Blom, N.1
Gammeltoft, S.2
Brunak, S.3
-
41
-
-
2942598149
-
PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation
-
Hornbeck PV, Chabra I, Kornhauser JM, Skrzypek E, Zhang B. PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation. Proteomics 2004; 4:1551-1561.
-
(2004)
Proteomics
, vol.4
, pp. 1551-1561
-
-
Hornbeck, P.V.1
Chabra, I.2
Kornhauser, J.M.3
Skrzypek, E.4
Zhang, B.5
-
42
-
-
11144353910
-
PERIOD2:: LU-CIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues
-
Yoo SH, Yamazaki S, Lowrey PL, et al. PERIOD2:: LU-CIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues. Proc Natl Acad Sci USA 2004; 101:5339-5346.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 5339-5346
-
-
Yoo, S.H.1
Yamazaki, S.2
Lowrey, P.L.3
-
43
-
-
77950519937
-
Origins of specifcity in protein-DNA recognition
-
Rohs R, Jin X, West SM, Joshi R, Honig B, Mann RS. Origins of specifcity in protein-DNA recognition. Annu Rev Biochem 2010; 79:233-269.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 233-269
-
-
Rohs, R.1
Jin, X.2
West, S.M.3
Joshi, R.4
Honig, B.5
Mann, R.S.6
-
44
-
-
31944443125
-
Molecular mechanism of cell-autonomous circadian gene expression of Pe-riod2, a crucial regulator of the mammalian circadian clock
-
Akashi M, Ichise T, Mamine T, Takumi T. Molecular mechanism of cell-autonomous circadian gene expression of Pe-riod2, a crucial regulator of the mammalian circadian clock. Mol Biol Cell 2006; 17:555-565.
-
(2006)
Mol Biol Cell
, vol.17
, pp. 555-565
-
-
Akashi, M.1
Ichise, T.2
Mamine, T.3
Takumi, T.4
-
45
-
-
78649687209
-
Circadian integration of metabolism and energetics
-
Bass J, Takahashi JS. Circadian integration of metabolism and energetics. Science 2010; 330:1349-1354.
-
(2010)
Science
, vol.330
, pp. 1349-1354
-
-
Bass, J.1
Takahashi, J.S.2
-
46
-
-
0037016665
-
Mitogen-activated protein kinase phosphorylates and negatively regulates basic helix-loop-helix-PAS transcription factor BMAL1
-
Sanada K, Okano T, Fukada Y. Mitogen-activated protein kinase phosphorylates and negatively regulates basic helix-loop-helix-PAS transcription factor BMAL1. J Biol Chem 2002; 277:267-271.
-
(2002)
J Biol Chem
, vol.277
, pp. 267-271
-
-
Sanada, K.1
Okano, T.2
Fukada, Y.3
-
47
-
-
33847779219
-
Post-translational modifications regulate the ticking of the circadian clock
-
Gallego M, Virshup DM. Post-translational modifications regulate the ticking of the circadian clock. Nat Rev Mol Cell Biol 2007; 8:139-148.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, pp. 139-148
-
-
Gallego, M.1
Virshup, D.M.2
-
48
-
-
33645010948
-
PER-dependent rhythms in CLK phosphorylation and E-box binding regulate circadian transcription
-
Yu W, Zheng H, Houl JH, Dauwalder B, Hardin PE. PER-dependent rhythms in CLK phosphorylation and E-box binding regulate circadian transcription. Genes Dev 2006; 20:723-733.
-
(2006)
Genes Dev
, vol.20
, pp. 723-733
-
-
Yu, W.1
Zheng, H.2
Houl, J.H.3
Dauwalder, B.4
Hardin, P.E.5
-
49
-
-
0035966317
-
Posttranslational mechanisms regulate the mammalian circadian clock
-
Lee C, Etchegaray JP, Cagampang FR, Loudon AS, Reppert SM. Posttranslational mechanisms regulate the mammalian circadian clock. Cell 2001; 107:855-867.
-
(2001)
Cell
, vol.107
, pp. 855-867
-
-
Lee, C.1
Etchegaray, J.P.2
Cagampang, F.R.3
Loudon, A.S.4
Reppert, S.M.5
-
50
-
-
33644617485
-
Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions
-
Ripperger JA, Schibler U. Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions. Nat Genet 2006; 38:369-374.
-
(2006)
Nat Genet
, vol.38
, pp. 369-374
-
-
Ripperger, J.A.1
Schibler, U.2
-
51
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 1997; 276:307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
52
-
-
33744459472
-
Toward the structural genomics of complexes: Crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis
-
Strong M, Sawaya MR, Wang S, Phillips M, Cascio D, Eisenberg D. Toward the structural genomics of complexes: crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. Proc Natl Acad Sci USA 2006; 103:8060-8065.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 8060-8065
-
-
Strong, M.1
Sawaya, M.R.2
Wang, S.3
Phillips, M.4
Cascio, D.5
Eisenberg, D.6
-
55
-
-
34250666701
-
Production and purifcation of lentiviral vectors
-
Tiscornia G, Singer O, Verma IM. Production and purifcation of lentiviral vectors. Nat Protoc 2006; 1:241-245.
-
(2006)
Nat Protoc
, vol.1
, pp. 241-245
-
-
Tiscornia, G.1
Singer, O.2
Verma, I.M.3
|