The Role of casein kinase i in the Drosophila circadian clock

Methods in Enzymology

Volumn 551, Issue , 2015, Pages 175-195

  Price, Jeffrey L ^a   Fan, Jin Yuan ^a   Keightley, Andrew ^a   Means, John C ^a  

^a UNIVERSITY OF MISSOURI KANSAS CITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CASEIN KINASE I;

ARTICLE; AUTOPHOSPHORYLATION; CARBOXY TERMINAL SEQUENCE; CIRCADIAN RHYTHM; CYANOBACTERIUM; DROSOPHILA; IN VITRO STUDY; PRIORITY JOURNAL; PROTEIN PHOSPHORYLATION; PROTEIN PROCESSING; SECOND MESSENGER; ANIMAL; CELL LINE; DROSOPHILA MELANOGASTER; ENZYMOLOGY; GENE EXPRESSION; PHOSPHORYLATION; PHYSIOLOGY;

CYANOBACTERIA; MAMMALIA;

ANIMALS; CASEIN KINASE I; CELL LINE; CIRCADIAN CLOCKS; DROSOPHILA MELANOGASTER; GENE EXPRESSION; PHOSPHORYLATION; PROTEIN PROCESSING, POST-TRANSLATIONAL;

EID: 84922275839     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/bs.mie.2014.10.012     Document Type: Chapter

References (53)

1. L.J. Ashmore, S. Sathyanarayanan, D.W. Silvestre, M.M. Emerson, P. Schotland, and A. Sehgal Novel insights into the regulation of the timeless protein The Journal of Neuroscience 23 2003 7810 7819
2. S mutation delays the nuclear accumulation of period protein and affects the feedback regulation of period mRNA The Journal of Neuroscience 21 2001 7117 7126
3. L. Beltran, and P.R. Cutillas Advances in phosphopeptide enrichment techniques for phosphoproteomics Amino Acids 43 2012 1009 1024
4. A.H. Brand, and N. Perrimon Targeted gene expression as a means of altering cell fates and generating dominant phenotypes Development 118 1993 401 415
5. M.F. Ceriani, T.K. Darlington, D. Staknis, P. Mas, A.A. Petti, and C.J. Weitz Light-dependent sequestration of TIMELESS by CRYPTOCHROME Science 285 1999 553 556
6. J.C. Chiu, H.W. Ko, and I. Edery NEMO/NLK phosphorylates PERIOD to initiate a time-delay phosphorylation circuit that sets circadian clock speed Cell 145 2011 357 370
7. J.C. Chiu, J.T. Vanselow, A. Kramer, and I. Edery The phospho-occupancy of an atypical SLIMB-binding site on PERIOD that is phosphorylated by DOUBLETIME controls the pace of the clock Genes and Development 22 2008 1758 1772
8. S.A. Cyran, G. Yiannoulos, A.M. Buchsbaum, L. Saez, M.W. Young, and J. Blau The double-time protein kinase regulates the subcellular localization of the Drosophila clock protein period The Journal of Neuroscience 25 2005 5430 5437
9. T.K. Darlington, K. Wagner-Smith, M.F. Ceriani, D. Staknis, N. Gekakis, and T.D.L. Steeves Closing the circadian loop - CLOCK-induced transcription of its own inhibitors, PER and TIM Science 280 1998 1599 1603
10. J.D. Dunn, G.E. Reid, and M.L. Bruening Techniques for phosphopeptide enrichment prior to analysis by mass spectrometry Mass Spectrometry Reviews 29 2010 29 54
11. I. Edery, L.J. Zwiebel, M.E. Dembinska, and M. Rosbash Temporal phosphorylation of the Drosophila period protein Proceedings of the National Academy of Sciences of the United States of America 91 1994 2260 2264
12. J.Y. Fan, B. Agyekum, A. Venkatesan, D.R. Hall, A. Keightley, and E.S. Bjes Noncanonical FK506-binding protein BDBT binds DBT to enhance its circadian function and forms foci at night Neuron 80 2013 984 996
13. J.Y. Fan, F. Preuss, M.J. Muskus, E.S. Bjes, and J.L. Price Drosophila and vertebrate casein kinase Idelta exhibits evolutionary conservation of circadian function Genetics 181 2009 139 152
14. M. Gallego, E.J. Eide, M.F. Woolf, D.M. Virshup, and D.B. Forger An opposite role for tau in circadian rhythms revealed by mathematical modeling Proceedings of the National Academy of Sciences of the United States of America 103 2006 10618 10623
15. D.S. Garbe, Y. Fang, X. Zheng, M. Sowcik, R. Anjum, and S.P. Gygi Cooperative interaction between phosphorylation sites on PERIOD maintains circadian period in Drosophila PLoS Genetics 9 2013 e1003749
16. K.F. Gietzen, and D.M. Virshup Identification of inhibitory autophosphorylation sites in casein kinase I epsilon The Journal of Biological Chemistry 274 1999 32063 32070
17. P.R. Graves, and P.J. Roach Role of COOH-terminal phosphorylation in the regulation of casein kinase I delta The Journal of Biological Chemistry 270 1995 21689 21694
18. A. Guthals, and N. Bandeira Peptide identification by tandem mass spectrometry with alternate fragmentation modes Molecular and Cellular Proteomics 11 2012 550 557
19. P.E. Hardin, J.C. Hall, and M. Rosbash Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levels Nature 343 1990 536 540
20. P.E. Hardin, and S. Panda Circadian timekeeping and output mechanisms in animals Current Opinion in Neurobiology 23 2013 724 731
21. Q. He, J. Cha, Q. He, H.C. Lee, Y. Yang, and Y. Liu CKI and CKII mediate the FREQUENCY-dependent phosphorylation of the WHITE COLLAR complex to close the Neurospora circadian negative feedback loop Genes and Development 20 2006 2552 2565
22. E.Y. Kim, and I. Edery Balance between DBT/CKIepsilon kinase and protein phosphatase activities regulate phosphorylation and stability of Drosophila CLOCK protein Proceedings of the National Academy of Sciences of the United States of America 103 2006 6178 6183
23. E.Y. Kim, H.W. Ko, W. Yu, P.E. Hardin, and I. Edery A DOUBLETIME kinase binding domain on the Drosophila PERIOD protein is essential for its hyperphosphorylation, transcriptional repression, and circadian clock function Molecular and Cellular Biology 27 2007 5014 5028
24. M. Kinter, and N.E. Sherman Protein sequencing and identification using tandem mass spectrometry 2000 Wiley-Interscience New York
25. S. Kivimae, L. Saez, and M.W. Young Activating PER repressor through a DBT-directed phosphorylation switch PLoS Biology 6 2008 e183
26. B. Kloss, J.L. Price, L. Saez, J. Blau, A. Rothenfluh, and C.S. Wesley The Drosophila clock gene double-time encodes a protein closely related to human casein kinase Iepsilon Cell 94 1998 97 107
27. B. Kloss, A. Rothenfluh, M.W. Young, and L. Saez Phosphorylation of period is influenced by cycling physical associations of double-time, period, and timeless in the Drosophila clock Neuron 30 2001 699 706
28. H.W. Ko, and I. Edery Analyzing the degradation of PERIOD protein by the ubiquitin-proteasome pathway in cultured Drosophila cells Methods in Enzymology 393 2005 394 408
29. H. Lee, R. Chen, Y. Lee, S. Yoo, and C. Lee Essential roles of CKIdelta and CKIepsilon in the mammalian circadian clock Proceedings of the National Academy of Sciences of the United States of America 106 2009 21359 21364
30. C. Lee, J.P. Etchegaray, F.R. Cagampang, A.S. Loudon, and S.M. Reppert Posttranslational mechanisms regulate the mammalian circadian clock Cell 107 2001 855 867
31. P.L. Lowrey, K. Shimomura, M.P. Antoch, S. Yamazaki, P.D. Zemenides, and M.R. Ralph Positional syntenic cloning and functional characterization of the mammalian circadian mutation, tau Science 288 2000 483 491
32. M.J. Muskus, F. Preuss, J.Y. Fan, E.S. Bjes, and J.L. Price Drosophila DBT lacking protein kinase activity produces long-period and arrhythmic circadian behavioral and molecular rhythms Molecular and Cellular Biology 27 2007 8049 8064
33. M. Nakajima, K. Imai, H. Ito, T. Nishiwaki, Y. Murayama, and H. Iwasaki Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro Science 308 2005 414 415
34. P. Nawathean, D. Stoleru, and M. Rosbash A small conserved domain of Drosophila PERIOD is important for circadian phosphorylation, nuclear localization, and transcriptional repressor activity Molecular and Cellular Biology 27 2007 5002 5013
35. M.W. Pinkse, P.M. Uitto, M.J. Hilhorst, B. Ooms, and A.J. Heck Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-nanoLC-ESI-MS/MS and titanium oxide precolumns Analytical Chemistry 76 2004 3935 3943
36. F. Preuss, J.Y. Fan, M. Kalive, S. Bao, E. Schuenemann, and E.S. Bjes Drosophila doubletime mutations which either shorten or lengthen the period of circadian rhythms decrease the protein kinase activity of casein kinase I Molecular and Cellular Biology 24 2004 886 898
37. J.L. Price, J. Blau, A. Rothenfluh, M. Abodeeley, B. Kloss, and M.W. Young Double-time is a novel Drosophila clock gene that regulates PERIOD protein accumulation Cell 94 1998 83 95
38. M.S. Robles, C. Boyault, D. Knutti, K. Padmanabhan, and C.J. Weitz Identification of RACK1 and protein kinase Calpha as integral components of the mammalian circadian clock Science 327 2010 463 466
39. L. Saez, and M.W. Young Regulation of nuclear entry of the Drosophila clock proteins period and timeless Neuron 17 1996 911 920
40. S. Sathyanarayanan, X. Zheng, S. Kumar, C.H. Chen, D. Chen, and B. Hay Identification of novel genes involved in light-dependent CRY degradation through a genome-wide RNAi screen Genes and Development 22 2008 1522 1533
41. D. Stoleru, Y. Peng, J. Agosto, and M. Rosbash Coupled oscillators control morning and evening locomotor behaviour of Drosophila Nature 431 2004 862 868
42. V. Suri, J.C. Hall, and M. Rosbash Two novel doubletime mutants alter circadian properties and eliminate the delay between RNA and protein in Drosophila The Journal of Neuroscience 20 2000 7547 7555
43. G. van Ooijen, M. Hindle, S.F. Martin, M. Barrios-Llerena, F. Sanchez, and F.Y. Bouget Functional analysis of Casein Kinase 1 in a minimal circadian system PLoS One 8 2013 e70021
44. K.M. Walton, K. Fisher, D. Rubitski, M. Marconi, Q.J. Meng, and M. Sladek Selective inhibition of casein kinase 1 epsilon minimally alters circadian clock period The Journal of Pharmacology and Experimental Therapeutics 330 2009 430 439
45. Y. Xu, Q.S. Padiath, R.E. Shapiro, C.R. Jones, S.C. Wu, and N. Saigoh Functional consequences of a CKIdelta mutation causing familial advanced sleep phase syndrome Nature 434 2005 640 644
46. Z. Yao, and O.T. Shafer The Drosophila circadian clock is a variably coupled network of multiple peptidergic units Science 343 2014 1516 1520
47. W. Yu, J.H. Houl, and P.E. Hardin NEMO kinase contributes to core period determination by slowing the pace of the Drosophila circadian oscillator Current Biology 21 2011 756 761
48. W. Yu, H. Zheng, J.L. Price, and P.E. Hardin DOUBLETIME plays a noncatalytic role to mediate CLOCK phosphorylation and repress CLOCK-dependent transcription within the Drosophila circadian clock Molecular and Cellular Biology 29 2009 1452 1458
49. D.M. Zerr, J.C. Hall, M. Rosbash, and K.K. Siwicki Circadian fluctuations of period protein immunoreactivity in the CNS and the visual system of Drosophila The Journal of Neuroscience 10 1990 2749 2762
50. Y. Zhang, Y. Liu, D. Bilodeau-Wentworth, P.E. Hardin, and P. Emery Light and temperature control the contribution of specific DN1 neurons to Drosophila circadian behavior Current Biology 20 2010 600 605
51. R. Zhao, S.J. Ding, Y. Shen, D.G. Camp 2nd., E.A. Livesay, and H. Udseth Automated metal-free multiple-column nanoLC for improved phosphopeptide analysis sensitivity and throughput Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences 877 2009 663 670
52. X. Zheng, M. Sowcik, D. Chen, and A. Sehgal Casein kinase 1 promotes synchrony of the circadian clock network Molecular and Cellular Biology 34 2014 2682 2694
53. O. Zilian, E. Frei, R. Burke, D. Brentrup, T. Gutjahr, and P.J. Bryant double-time is identical to discs overgrown, which is required for cell survival, proliferation and growth arrest in Drosophila imaginal discs Development 126 1999 5409 5420