Automated metal-free multiple-column nanoLC for improved phosphopeptide analysis sensitivity and throughput

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 877, Issue 8-9, 2009, Pages 663-670

  Zhao, Rui ^a   Ding, Shi Jian ^a   Shen, Yufeng ^a   Camp II, David G ^a   Livesay, Eric A ^a   Udseth, Harold ^a   Smith, Richard D ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

Automation; Mass spectrometer; Metal free nano LC; On line SPE column; Phosphopeptide

Indexed keywords

AMINES; AMINO ACIDS; AUTOMATION; ELECTROSPRAY IONIZATION; EXTRACTION; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETERS; MASS SPECTROMETRY; METAL RECOVERY; METALS; PEPTIDES; SENSITIVITY ANALYSIS; SOLAR RADIATION;

ANALYTE; AUTOMATIC SWITCHING; DETECTION LIMITS; FLUIDIC DESIGNS; HIGH-THROUGHPUT ANALYSIS; HUMAN T-CELLS; IMMUNOPRECIPITATION; LINEAR ION TRAPS; METAL SURFACES; NANO-LC COLUMNS; ON LINE SPE COLUMN; ON-LINE SOLID-PHASE EXTRACTIONS; PEAK CAPACITIES; PHOSPHOPEPTIDE; PHOSPHOPEPTIDE ANALYSIS; PHOSPHOPEPTIDES; PHOSPHOTYROSINE; SENSITIVE ANALYSIS; SEPARATION POWER; TRYPTIC DIGESTS;

METAL ANALYSIS;

ASPARTYLLEUCYLASPARTYLVALYLPROLYLISOLEUCYLPROLYLGLYCYLARGINYLPHENYLALANYLASPARTY LARGINYLARGINYLVALINE PHOSPHOSERINE VALYLALANYLALANYLGLUTAMINE; GLUTAMYLGLUTAMYLGLUTAMINYLGLUTAMINYLGLUTAMINYLTHREONYLGLUTAMYLASPARTYLGLUTAMYLLE UCYLGLUTAMINYLASPARTYLLYSINE; PHOSPHOPEPTIDE; PHOSPHOTYROSINE; SERYLPHENYLALANYLVALYLLEUCYLASPARAGINYLPROLYLTHREONYLASPARAGINYLISOLEUCYLGLYCYLM ETHIONINE PHOSPHOSERINE LYSYLSERYLSERYLGLUTAMINYLGLYCYLHISTIDYLVALYLTHREONYLLYSINE; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CELL LINE; CONTROLLED STUDY; DETECTION LIMIT; ELECTROSPRAY; HIGH THROUGHPUT SCREENING; HUMAN; HUMAN CELL; IMMUNOPRECIPITATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NANOANALYSIS; NONHUMAN; PARAMETER; PRIORITY JOURNAL; SENSITIVITY ANALYSIS; SOLID PHASE EXTRACTION; TANDEM MASS SPECTROMETRY;

AMINO ACID SEQUENCE; ANIMALS; CELLS, CULTURED; CERCOPITHECUS AETHIOPS; COS CELLS; HUMANS; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PHOSPHOPEPTIDES; SENSITIVITY AND SPECIFICITY;

EID: 61349189040     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jchromb.2008.12.068     Document Type: Article

References (31)

1. Hunter T. Cell 100 (2000) 113
2. Hunter T. Philos. Trans. R. Soc. Lond. B Biol. Sci 353 (1998) 583
3. Cohen P. Nat. Rev. Drug Discov. 1 (2002) 309
4. Irish J.M., Kotecha N., and Nolan G.P. Nat. Rev. Cancer 6 (2006) 146
5. Kalume D.E., Molina H., and Pandey A. Curr. Opin. Chem. Biol. 7 (2003) 64
6. Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., and Mann M. Cell 127 (2006) 635
7. Conrads T.P., and Veenstra T.D. Nat. Biotechnol. 23 (2005) 36
8. Brill L.M., Salomon A.R., Ficarro S.B., Mukherji M., Stettle-Gill M., and Peters E.C. Anal. Chem. 76 (2004) 2763
9. Ficarro S., Chertihin O., Westbrook V.A., White F., Jayes F., Kalab P., Marto J.A., Shabanowitz J., Herr J.C., Hunt D.F., and Visconti P.E. J. Biol. Chem. 278 9 (2003) 11579
10. Pinkse M.W., Uitto P.M., Hilhorst M.J., Ooms B., and Heck A.J. Anal. Chem. 76 (2004) 3935
11. Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H., Zha X.M., Polakiewicz R.D., and Comb M.J. Nat. Biotechnol. 23 (2005) 94
12. Zhou H., Watts J.D., and Aebersold R. Nat. Biotechnol. 19 (2001) 375
13. Tao W.A., Wollscheid B., O'Brien R., Eng J.K., Li X.J., Bodenmiller B., Watts J.D., Hood L., and Aebersold R. Nat. Methods 2 (2005) 591
14. Goshe M.B., Veenstra T.D., Panisko E.A., Conrads T.P., Angell N.H., and Smith R.D. Anal. Chem. 74 (2002) 607
15. Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villén J., Li J., Cohn M.A., Cantley L.C., and Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 12130
16. Ficarro S.B., Salomon A.R., Brill L.M., Mason D.E., Stettler-Gill M., Brock A., and Peters E.C. Rapid Commun. Mass Spectrom. 19 (2005) 57
17. Schlosser A., Vanselow J.T., and Kramer A. Anal. Chem. 77 (2005) 5243
18. Wang J., Zhang Y., Jiang H., Cai Y., and Qian X. Proteomics 6 (2006) 404
19. Martin S.E., Shabanowitz J., Hunt D.F., and Marto J.A. Anal. Chem. 72 (2000) 4266
20. Licklider L.J., Thoreen C.C., Peng J., and Gygi S.P. Anal. Chem. 74 (2002) 3076
21. Shen Y., Tolić N., Zhao R., Paša-Tolić L., Li L., Berger S.J., Harkewicz R., Anderson G.A., Belov M.E., and Smith R.D. Anal. Chem. 73 (2001) 3011
22. Shen Y., Moore R.J., Zhao R., Blonder J., Auberry D.L., Masselon C., Paša-Tolić L., Hixson K.K., Auberry K.J., and Smith R.D. Anal. Chem. 75 (2003) 3596
23. Shen Y., Zhao R., Berger S.J., Anderson G.A., Rodriguez N., and Smith R.D. Anal. Chem. 74 (2002) 4235
24. Shen Y., Tolić N., Masselon C., Paša-Tolić L., Camp II D.G., Hixson K.K., Zhao R., Anderson G.A., and Smith R.D. Anal. Chem. 76 (2004) 144
25. Liu S., Zhang C., Campbell J.L., Zhang H., Yeung K.K., Han V.K., and Lajoie G.A. Rapid Commun. Mass Spectrom. 19 (2005 2747)
26. Livesay E., Tang K., Taylor B.K., Buschbach M.A., Hopkins D.F., LaMarche B.L., Zhao R., Shen Y., Orton D.J., Moore R.J., Kelly R.T., Udseth H.R., and Smith R.D. Anal. Chem. 80 (2008) 294
27. Band V., and Sager R. Proc. Natl. Acad. Sci. U.S.A. 86 (1989) 1249
28. Yang F., Stenoien L.D., Strittmatter E.F., Wang J., Ding L., Lipton M.S., Monroe M.E., Nicora C.D., Gristenko M.A., Tang K., Fang R., Adkins J.N., Camp D.G.I.I., Chen D.J., and Smith R.D. J. Proteome Res. 5 (2006) 1252
29. Shen Y., Zhang R., Moore R.J., Kim J., Metz T.O., Hixson K.K., Zhao R., Livesay E.A., Udseth H.R., and Smith R.D. Anal. Chem. 77 (2005) 3090
30. Kim J., Camp D.G.I.I., and Smith R.D. J. Mass Spectrom. 39 (2004) 208
31. Cooper J.A., Sefton B.M., and Hunter T. Methods Enzymol. 99 (1983) 387