-
1
-
-
0000931002
-
A Proposed Model for Interaction of Polypeptides with RNA
-
Carter, C.W., Jr.; Kraut, J. A Proposed Model for Interaction of Polypeptides with RNA. Proc. Natl. Acad. Sci. USA 1974, 71, 283-287.
-
(1974)
Proc. Natl. Acad. Sci. USA
, vol.71
, pp. 283-287
-
-
Carter, C.W.1
Kraut, J.2
-
2
-
-
84903905062
-
Cradles for Molecular Evolution
-
27 March
-
Carter, C.W., Jr. Cradles for Molecular Evolution. New Scientist, 27 March 1975, pp. 784-787.
-
(1975)
New Scientist
, pp. 784-787
-
-
Carter, C.W.1
-
3
-
-
33646080332
-
Progress Toward Understanding the Origin of the RNA World
-
3rd ed.; Gesteland, R.F., Cech, T.R., Atkins, J., Eds.; Cold Spring Harbor Laboratory: Cold Spring Harbor, NY, USA
-
Joyce, G.; Orgel, L.E. Progress Toward Understanding the Origin of the RNA World. In The RNA World, 3rd ed.; Gesteland, R.F., Cech, T.R., Atkins, J., Eds.; Cold Spring Harbor Laboratory: Cold Spring Harbor, NY, USA, 2006.
-
(2006)
The RNA World
-
-
Joyce, G.1
Orgel, L.E.2
-
4
-
-
84922035503
-
RNA World 2.0
-
1 March
-
Akst, J. RNA World 2.0. The Scientist, 1 March 2014, pp. 34-40.
-
(2014)
The Scientist
, pp. 34-40
-
-
Akst, J.1
-
5
-
-
0038497542
-
A Structure for Deoxyribose Nucleic Acid
-
Watson, J.D.; Crick, F.H.C. A Structure for Deoxyribose Nucleic Acid. Nature 1953, 171, 737-738.
-
(1953)
Nature
, vol.171
, pp. 737-738
-
-
Watson, J.D.1
Crick, F.H.C.2
-
6
-
-
36849148382
-
The RNA World
-
Gilbert, W. The RNA World. Nature 1986, 319, 618.
-
(1986)
Nature
, vol.319
, pp. 618
-
-
Gilbert, W.1
-
8
-
-
0029436218
-
Two Types of Aminoacyl-tRNA Synthetases Could be Originally Encoded by Complementary Strands of the Same Nucleic Acid
-
Rodin, S.N.; Ohno, S. Two Types of Aminoacyl-tRNA Synthetases Could be Originally Encoded by Complementary Strands of the Same Nucleic Acid. Orig. Life Evol. Biosph. 1995, 25, 565-589.
-
(1995)
Orig. Life Evol. Biosph.
, vol.25
, pp. 565-589
-
-
Rodin, S.N.1
Ohno, S.2
-
9
-
-
0025158208
-
Partition of tRNA Synthetases into Two Classes Based on Mutually Exclusive Sets of Sequence Motifs
-
Eriani, G.; Delarue, M.; Poch, O.; Gangloff, J.; Moras, D. Partition of tRNA Synthetases into Two Classes Based on Mutually Exclusive Sets of Sequence Motifs. Nature 1990, 347, 203-206.
-
(1990)
Nature
, vol.347
, pp. 203-206
-
-
Eriani, G.1
Delarue, M.2
Poch, O.3
Gangloff, J.4
Moras, D.5
-
10
-
-
0025043116
-
A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 Å
-
Cusack, S.; Berthet-Colominas, C.; Härtlein, M.; Nassar, N.; Leberman, R. A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 Å. Nature 1990, 347, 249-255.
-
(1990)
Nature
, vol.347
, pp. 249-255
-
-
Cusack, S.1
Berthet-Colominas, C.2
Härtlein, M.3
Nassar, N.4
Leberman, R.5
-
11
-
-
0026429275
-
Class II Aminoacyl Transfer RNA Synthetases: Crystal Structure of Yeast Aspartyl-tRNA Synthetase Complexed with Trna (Asp)
-
Ruff, M.; Krishnaswamy, S.; Boeglin, M.; Poterszman, A.; Mitschler, A.; Podjarny, A.; Rees, B.; Thierry, J.C.; Moras, D. Class II Aminoacyl Transfer RNA Synthetases: Crystal Structure of Yeast Aspartyl-tRNA Synthetase Complexed with Trna (Asp). Science 1991, 252, 1682-1689.
-
(1991)
Science
, vol.252
, pp. 1682-1689
-
-
Ruff, M.1
Krishnaswamy, S.2
Boeglin, M.3
Poterszman, A.4
Mitschler, A.5
Podjarny, A.6
Rees, B.7
Thierry, J.C.8
Moras, D.9
-
12
-
-
84903893580
-
Urzymology: Experimental Access to a Key Transition in the Appearance of Enzymes
-
Carter, C.W., Jr. Urzymology: Experimental Access to a Key Transition in the Appearance of Enzymes. J. Biol. Chem. 2014, 289, 30213-30220.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 30213-30220
-
-
Carter, C.W.1
-
13
-
-
84884171822
-
Aminoacylating Urzymes Challenge the RNA World Hypothesis
-
Li, L.; Francklyn, C.; Carter, C.W., Jr. Aminoacylating Urzymes Challenge the RNA World Hypothesis. J. Biol. Chem. 2013, 288, 26856-26863.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 26856-26863
-
-
Li, L.1
Francklyn, C.2
Carter, C.W.3
-
14
-
-
79953187583
-
Histidyl-tRNA Synthetase Urzymes: Class I and II Aminoacyl-tRNA Synthetase Urzymes have Comparable Catalytic Activities for Cognate Amino Acid Activation
-
Li, L.; Weinreb, V.; Francklyn, C.; Carter, C.W., Jr. Histidyl-tRNA Synthetase Urzymes: Class I and II Aminoacyl-tRNA Synthetase Urzymes have Comparable Catalytic Activities for Cognate Amino Acid Activation. J. Biol. Chem. 2011, 286, 10387-10395.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 10387-10395
-
-
Li, L.1
Weinreb, V.2
Francklyn, C.3
Carter, C.W.4
-
15
-
-
33947266906
-
A Minimal TrpRS Catalytic Domain Supports Sense/Antisense Ancestry of Class I and II Aminoacyl-tRNA Synthetases
-
Pham, Y.; Li, L.; Kim, A.; Erdogan, O.; Weinreb, V.; Butterfoss, G.; Kuhlman, B.; Carter, C.W., Jr. A Minimal TrpRS Catalytic Domain Supports Sense/Antisense Ancestry of Class I and II Aminoacyl-tRNA Synthetases. Mol. Cell 2007, 25, 851-862.
-
(2007)
Mol. Cell
, vol.25
, pp. 851-862
-
-
Pham, Y.1
Li, L.2
Kim, A.3
Erdogan, O.4
Weinreb, V.5
Butterfoss, G.6
Kuhlman, B.7
Carter, C.W.8
-
16
-
-
0036809656
-
Did tRNA Synthetase Classes Arise on Opposite Strands of the Same Gene?
-
Carter, C.W., Jr.; Duax, W.L. Did tRNA Synthetase Classes Arise on Opposite Strands of the Same Gene? Mol. Cell 2002, 10, 705-708.
-
(2002)
Mol. Cell
, vol.10
, pp. 705-708
-
-
Carter, C.W.1
Duax, W.L.2
-
17
-
-
84879405227
-
Statistical Evaluation of the Rodin-Ohno Hypothesis: Sense/Antisense Coding of Ancestral Class I and II Aminoacyl-tRNA Synthetases
-
Chandrasekaran, S.N.; Yardimci, G.; Erdogan, O.; Roach, J.M.; Carter, C.W., Jr. Statistical Evaluation of the Rodin-Ohno Hypothesis: Sense/Antisense Coding of Ancestral Class I and II Aminoacyl-tRNA Synthetases. Mol. Biol. Evol. 2013, 30, 1588-1604.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1588-1604
-
-
Chandrasekaran, S.N.1
Yardimci, G.2
Erdogan, O.3
Roach, J.M.4
Carter, C.W.5
-
18
-
-
84922035502
-
Functional Class I and II Amino Acid Activating Enzymes Can Be Coded by Opposite Strands of the Same Gene
-
Submitted for publication
-
Martinez, L.; Jimenez-Rodriguez, M.; Gonzalez-Rivera, K.; Williams, T.; Li, L.; Weinreb, V.; Niranj Chandrasekaran, S.; Collier, M.; Ambroggio, X.; Kuhlman, B.; Erdogan, O.; Carter, C.W., Jr. Functional Class I and II Amino Acid Activating Enzymes Can Be Coded by Opposite Strands of the Same Gene. J. Biol. Chem. 2015, Submitted for publication.
-
(2015)
J. Biol. Chem.
-
-
Martinez, L.1
Jimenez-Rodriguez, M.2
Gonzalez-Rivera, K.3
Williams, T.4
Li, L.5
Weinreb, V.6
Niranj Chandrasekaran, S.7
Collier, M.8
Ambroggio, X.9
Kuhlman, B.10
Erdogan, O.11
Carter, C.W.12
-
19
-
-
84908671076
-
Did Class 1 and Class 2 Aminoacyl-tRNA Synthetases Descend from Genetically Complementary, Catalytically Active ATP-Binding Motifs?
-
Jimenez, M.; Williams, T.; González-Rivera, A.K.; Li, L.; Erdogan, O.; Carter, C.W., Jr. Did Class 1 and Class 2 Aminoacyl-tRNA Synthetases Descend from Genetically Complementary, Catalytically Active ATP-Binding Motifs? Biophys. J. 2014, 106, 675a.
-
(2014)
Biophys. J.
, vol.106
, pp. 675
-
-
Jimenez, M.1
Williams, T.2
González-Rivera, A.K.3
Li, L.4
Erdogan, O.5
Carter, C.W.6
-
20
-
-
84902053224
-
The Rodin-Ohno Hypothesis That Two Enzyme Superfamilies Descended from One Ancestral Gene: An Unlikely Scenario for the Origins of Translation That Will Not Be Dismissed
-
Carter, C.W., Jr.; Li, L.; Weinreb, V.; Collier, M.; Gonzales-Rivera, K.; Jimenez-Rodriguez, M.; Erdogan, O.; Chandrasekharan, S.N. The Rodin-Ohno Hypothesis That Two Enzyme Superfamilies Descended from One Ancestral Gene: An Unlikely Scenario for the Origins of Translation That Will Not Be Dismissed. Biol. Direct 2014, 9, doi:10.1186/1745-6150-9-1.
-
(2014)
Biol. Direct
, vol.9
-
-
Carter, C.W.1
Li, L.2
Weinreb, V.3
Collier, M.4
Gonzales-Rivera, K.5
Jimenez-Rodriguez, M.6
Erdogan, O.7
Chandrasekharan, S.N.8
-
21
-
-
78649653834
-
Tryptophanyl-tRNA synthetase Urzyme: A model to recapitulate molecular evolution and investigate intramolecular complementation
-
Pham, Y.; Kuhlman, B.; Butterfoss, G.L.; Hu, H.; Weinreb, V.; Carter, C.W., Jr. Tryptophanyl-tRNA synthetase Urzyme: A model to recapitulate molecular evolution and investigate intramolecular complementation. J. Biol. Chem. 2010, 285, 38590-38601.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 38590-38601
-
-
Pham, Y.1
Kuhlman, B.2
Butterfoss, G.L.3
Hu, H.4
Weinreb, V.5
Carter, C.W.6
-
22
-
-
34047227549
-
The Rate Enhancement Produced by the Ribosome: An Improved Model
-
Schroeder, G.K.; Wolfenden, R. The Rate Enhancement Produced by the Ribosome: An Improved Model. Biochemisty 2007, 46, 4037-4044.
-
(2007)
Biochemisty
, vol.46
, pp. 4037-4044
-
-
Schroeder, G.K.1
Wolfenden, R.2
-
23
-
-
2542564300
-
The ribosome as an entropy trap
-
Sievers, A.; Beringer, M.; Rodnina, M.V.; Wolfenden, R. The ribosome as an entropy trap. Proc. Natl. Acad. Sci. USA 2004, 101, 7897-7901.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7897-7901
-
-
Sievers, A.1
Beringer, M.2
Rodnina, M.V.3
Wolfenden, R.4
-
24
-
-
72449152725
-
On Primordial Sense-Antisense Coding
-
Rodin, A.; Rodin, S.N.; Carter, C.W., Jr. On Primordial Sense-Antisense Coding. J. Mol. Evol. 2009, 69, 555-567.
-
(2009)
J. Mol. Evol.
, vol.69
, pp. 555-567
-
-
Rodin, A.1
Rodin, S.N.2
Carter, C.W.3
-
25
-
-
84894199948
-
Enhanced Amino Acid Selection in Fully-Evolved Tryptophanyl-tRNA Synthetase, Relative to its Urzyme, Requires Domain Movement Sensed by the D1 Switch, a Remote, Dynamic Packing Motif
-
Weinreb, V.; Li, L.; Chandrasekaran, S.N.; Koehl, P.; Delarue, M.; Carter, C.W., Jr. Enhanced Amino Acid Selection in Fully-Evolved Tryptophanyl-tRNA Synthetase, Relative to its Urzyme, Requires Domain Movement Sensed by the D1 Switch, a Remote, Dynamic Packing Motif. J. Biol. Chem. 2014, 289, 4367-4376.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 4367-4376
-
-
Weinreb, V.1
Li, L.2
Chandrasekaran, S.N.3
Koehl, P.4
Delarue, M.5
Carter, C.W.6
-
26
-
-
84888996933
-
Full Implementation of the Genetic Code by Tryptophanyl-tRNA Synthetase Requires Intermodular Coupling
-
Li, L.; Carter, C.W., Jr. Full Implementation of the Genetic Code by Tryptophanyl-tRNA Synthetase Requires Intermodular Coupling. J. Biol. Chem. 2013, 288, 34736-34745.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 34736-34745
-
-
Li, L.1
Carter, C.W.2
-
27
-
-
0026075798
-
Structural Relationships and the Classification of Aminoacyl-tRNA Synthetases
-
Burbaum, J.; Schimmel, P. Structural Relationships and the Classification of Aminoacyl-tRNA Synthetases. J. Biol. Chem. 1991, 266, 16965-16968.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 16965-16968
-
-
Burbaum, J.1
Schimmel, P.2
-
28
-
-
0026032475
-
Assembly of a Class I tRNA Synthetase from Products of an Artificially Split Gene
-
Burbaum, J.J.; Schimmel, P. Assembly of a Class I tRNA Synthetase from Products of an Artificially Split Gene. Biochemtry 1991, 30, 319-324.
-
(1991)
Biochemtry
, vol.30
, pp. 319-324
-
-
Burbaum, J.J.1
Schimmel, P.2
-
29
-
-
0025343160
-
Understanding Structural Relationships in Proteins of Unsolved Three-Dimensional Structure
-
Burbaum, J.J.; Starzyk, R.M.; Schimmel, P. Understanding Structural Relationships in Proteins of Unsolved Three-Dimensional Structure. Protein. Struct. Funct. Genet. 1990, 7, 99-111.
-
(1990)
Protein. Struct. Funct. Genet.
, vol.7
, pp. 99-111
-
-
Burbaum, J.J.1
Starzyk, R.M.2
Schimmel, P.3
-
30
-
-
33747859373
-
RosettaDesign server for protein design
-
Liu, Y.; Kuhlman, B. RosettaDesign server for protein design. Nucleic Acids Res. 2006, 34, 235-238.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 235-238
-
-
Liu, Y.1
Kuhlman, B.2
-
31
-
-
0035543093
-
The Depth of Chemical Time and the Power of Enzymes as Catalysts
-
Wolfenden, R.; Snider, M.J. The Depth of Chemical Time and the Power of Enzymes as Catalysts. Acc. Chem. Res. 2001, 34, 938-945.
-
(2001)
Acc. Chem. Res.
, vol.34
, pp. 938-945
-
-
Wolfenden, R.1
Snider, M.J.2
-
32
-
-
37049122234
-
The Reactivity of Phosphate Esters. Reactions of Diesters with Nucleophiles
-
Kirby, A.J.; Younas, M. The Reactivity of Phosphate Esters. Reactions of Diesters with Nucleophiles. J. Chem. Soc. B Phys. Org. 1970, doi:10.1039/J29700001165.
-
(1970)
J. Chem. Soc. B Phys. Org.
-
-
Kirby, A.J.1
Younas, M.2
-
33
-
-
69249106454
-
The Intrinsic Reactivity of ATP and the Catalytic Proficiencies of Kinases Acting on Glucose, N-Acetylgalactosamine, and Homeserine: A Thermodynamic Analysis
-
Stockbridge, R.B.; Wolfenden, R. The Intrinsic Reactivity of ATP and the Catalytic Proficiencies of Kinases Acting on Glucose, N-Acetylgalactosamine, and Homeserine: A Thermodynamic Analysis. J. Biol. Chem. 2009, 284, 22747-22757.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 22747-22757
-
-
Stockbridge, R.B.1
Wolfenden, R.2
-
34
-
-
0035912786
-
RNA-catalyzed amino acid activation
-
Kumar, R.K.; Yarus, M. RNA-catalyzed amino acid activation. Biochemtry 2001, 40, 6998-7004.
-
(2001)
Biochemtry
, vol.40
, pp. 6998-7004
-
-
Kumar, R.K.1
Yarus, M.2
-
35
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32, 1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
36
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal, F.; Zardoya, R.; Posada, D. ProtTest: Selection of best-fit models of protein evolution. Bioinformatics 2005, 21, 2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
37
-
-
84864453108
-
jModelTest 2: More models, new heuristics and parallel computing
-
Darriba, D.; Taboada, G.L.; Doallo, R.; Posada, D. jModelTest 2: More models, new heuristics and parallel computing. Nat. Meth. 2012, 9, doi:10.1038/nmeth.2109.
-
(2012)
Nat. Meth.
, vol.9
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
38
-
-
34547803197
-
PAML 4: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. PAML 4: A program package for phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24, 1586-1591.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
40
-
-
0022703916
-
Are proteins made of modules
-
Traut, T.W. Are proteins made of modules. Mol. Cell. Biochem. 1986, 7, 3-10.
-
(1986)
Mol. Cell. Biochem.
, vol.7
, pp. 3-10
-
-
Traut, T.W.1
-
41
-
-
84868370084
-
The Origin of Life: Look Up and Look Down
-
Peters, J.W.; Williams, L.D. The Origin of Life: Look Up and Look Down. Astrobiology 2012, 12, 1087-1092.
-
(2012)
Astrobiology
, vol.12
, pp. 1087-1092
-
-
Peters, J.W.1
Williams, L.D.2
-
42
-
-
33746092088
-
Collective Evolution and the Genetic Code
-
Vestigian, K.; Woese, C.R.; Goldenfeld, N. Collective Evolution and the Genetic Code. Proc. Natl. Acad. Sci. USA 2006, 103, 10696-10701.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 10696-10701
-
-
Vestigian, K.1
Woese, C.R.2
Goldenfeld, N.3
-
43
-
-
0013824051
-
On the Origin of the Genetic Code
-
Woese, C.R. On the Origin of the Genetic Code. Proc. Natl. Acad. Sci. USA 1965, 54, 1546-1552.
-
(1965)
Proc. Natl. Acad. Sci. USA
, vol.54
, pp. 1546-1552
-
-
Woese, C.R.1
-
44
-
-
84904316312
-
Evolution of the Ribosome at Atomic Resolution
-
Petrov, A.S.; Bernier, C.R.; Hsiao, C.; Norris, A.M.; Kovacs, N.A.; Waterbury, C.C.; Stepanov, V.G.; Harvey, S.C.; Fox, G.E.; Wartell, R.M.; et al. Evolution of the Ribosome at Atomic Resolution. Proc. Natl. Acad. Sci. USA 2014, 111, 10251-10256.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 10251-10256
-
-
Petrov, A.S.1
Bernier, C.R.2
Hsiao, C.3
Norris, A.M.4
Kovacs, N.A.5
Waterbury, C.C.6
Stepanov, V.G.7
Harvey, S.C.8
Fox, G.E.9
Wartell, R.M.10
-
45
-
-
84876394657
-
Molecular paleontology: A biochemical model of the ancestral ribosome
-
Hsiao, C; Lenz, T.K.; Peters, J.K.; Fang, P.-Y.; Schneider, D.M.; Anderson, E.J.; Preeprem, T.; Bowman, J.C.; O'Neill, E.B.; Lie, L.; et al. Molecular paleontology: A biochemical model of the ancestral ribosome. Nucleic Acids Res. 2013, 41, 3373-3385.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 3373-3385
-
-
Hsiao, C.1
Lenz, T.K.2
Peters, J.K.3
Fang, P.-Y.4
Schneider, D.M.5
Anderson, E.J.6
Preeprem, T.7
Bowman, J.C.8
O'Neill, E.B.9
Lie, L.10
-
46
-
-
0026639881
-
Unusual Resistance of Peptidyl Transferase to Protein Extraction Procedures
-
Noller, H.F.; Hoffarth, V.; Zimniak, L. Unusual Resistance of Peptidyl Transferase to Protein Extraction Procedures. Science 1992, 256, 1416-1419.
-
(1992)
Science
, vol.256
, pp. 1416-1419
-
-
Noller, H.F.1
Hoffarth, V.2
Zimniak, L.3
-
47
-
-
0037423764
-
Functional Fingerprints of Folds: Evidence for Correlated Structure-Function Evolution
-
Shakhnovich, B.E.; Dokholyan, N.V.; DeLisi, C.; Shacknovich, E. Functional Fingerprints of Folds: Evidence for Correlated Structure-Function Evolution. J. Mol. Biol. 2003, 326, 1-9.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 1-9
-
-
Shakhnovich, B.E.1
Dokholyan, N.V.2
DeLisi, C.3
Shacknovich, E.4
-
48
-
-
0037195119
-
Expanding protein universe and its origin from the biological big bang
-
Dokholyan, N.V.; Shakhnovich, B.; Shacknovich, E.I. Expanding protein universe and its origin from the biological big bang. Proc. Natl. Acad. Sci. USA 2002, 99, 14132-14136.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14132-14136
-
-
Dokholyan, N.V.1
Shakhnovich, B.2
Shacknovich, E.I.3
-
49
-
-
0035823119
-
Understanding hierarchical protein evolution from first principles
-
Dokholyan, N.V.; Shakhnovich, E.I. Understanding hierarchical protein evolution from first principles. J. Mol. Biol. 2001, 312, 289-307.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 289-307
-
-
Dokholyan, N.V.1
Shakhnovich, E.I.2
-
50
-
-
0027171607
-
Sequential Proton NMR Resonance Assignments, Circular Dichroism, and Structural Properties of a 50-Residue Substrate-Binding Peptide from DNA Polymerase I
-
Mullen, G.P.; Vaughn, J.B., Jr.; Mildvan, A.S. Sequential Proton NMR Resonance Assignments, Circular Dichroism, and Structural Properties of a 50-Residue Substrate-Binding Peptide from DNA Polymerase I. Arch. Biochem. Biophys. 1993, 301, 174-183.
-
(1993)
Arch. Biochem. Biophys.
, vol.301
, pp. 174-183
-
-
Mullen, G.P.1
Vaughn, J.B.2
Mildvan, A.S.3
-
51
-
-
0026687134
-
Two-Dimensional NMR, Circular Dichroism, and Fluorescence Studies of PP-50, a Synthetic ATP-Binding Peptide from the β-Subunit of Mitochondrial ATP Synthase
-
Chuang, W.-J.; Abeygunawardana, C.; Pedersen, P.L.; Mildvan, A.S. Two-Dimensional NMR, Circular Dichroism, and Fluorescence Studies of PP-50, a Synthetic ATP-Binding Peptide from the β-Subunit of Mitochondrial ATP Synthase. Biochem. 1992, 31, 7915-7921.
-
(1992)
Biochem.
, vol.31
, pp. 7915-7921
-
-
Chuang, W.-J.1
Abeygunawardana, C.2
Pedersen, P.L.3
Mildvan, A.S.4
-
53
-
-
0023896339
-
Solution Structure of the 45-Residue MgATP-Binding Peptide of Adenylate Kinase As Examined by 2-D NMR, FTIR, and CD Spectroscopy
-
Fry, D.C.; Byler, D.M.; Sisu, H.; Brown, E.M.; Kuby, S.A.; Mildvan, A.S. Solution Structure of the 45-Residue MgATP-Binding Peptide of Adenylate Kinase As Examined by 2-D NMR, FTIR, and CD Spectroscopy. Biochem. 1988, 27, 3588-3598.
-
(1988)
Biochem.
, vol.27
, pp. 3588-3598
-
-
Fry, D.C.1
Byler, D.M.2
Sisu, H.3
Brown, E.M.4
Kuby, S.A.5
Mildvan, A.S.6
-
54
-
-
0021934074
-
NMR Studies of the MgATP Binding Site of Adenylate Kinase and of a 45-Residue Peptide Fragment of the Enzyme
-
Fry, D.C.; Kuby, S.A.; Mildvan, A.S. NMR Studies of the MgATP Binding Site of Adenylate Kinase and of a 45-Residue Peptide Fragment of the Enzyme. Biochemtry 1985, 24, 4680-4694.
-
(1985)
Biochemtry
, vol.24
, pp. 4680-4694
-
-
Fry, D.C.1
Kuby, S.A.2
Mildvan, A.S.3
-
55
-
-
0027436686
-
An operational RNA code for amino acids and possible relationship to genetic code
-
Schimmel, P.; Giegé, R.; Moras, D.; Yokoyama, S. An operational RNA code for amino acids and possible relationship to genetic code. Proc. Natl. Acad. Sci. USA 1993, 90, 8763-8768.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8763-8768
-
-
Schimmel, P.1
Giegé, R.2
Moras, D.3
Yokoyama, S.4
-
56
-
-
84922035501
-
tRNA Acceptor-Stem and Anticodon Bases Form Independent Codes Related to Protein Folding
-
Submitted for publication
-
Carter, C.W., Jr.; Wolfenden, R. tRNA Acceptor-Stem and Anticodon Bases Form Independent Codes Related to Protein Folding. Proc. Natl. Acad. Sci. USA 2015, Submitted for publication.
-
(2015)
Proc. Natl. Acad. Sci. USA
-
-
Carter, C.W.1
Wolfenden, R.2
-
57
-
-
0028568650
-
Intrinsic Secondary Structure Propensities of the Amino Acids, Using Statistical Φ-Ψ matrices: Comparison with Experimental Scales
-
Muñoz, V.; Serrano, L. Intrinsic Secondary Structure Propensities of the Amino Acids, Using Statistical Φ-Ψ matrices: Comparison with Experimental Scales. Protein. Struct. Funct. Gen. 1994, 20, 301-311.
-
(1994)
Protein. Struct. Funct. Gen.
, vol.20
, pp. 301-311
-
-
Muñoz, V.1
Serrano, L.2
-
58
-
-
84859910800
-
Toward a Molecular Understanding of Protein Solubility: Increased Negative Surface Charge Correlates with Increased Solubility
-
Kramer, R.M.; Shende, V.R.; Motl, N.; Pace, C.N.; Scholtz, J.M. Toward a Molecular Understanding of Protein Solubility: Increased Negative Surface Charge Correlates with Increased Solubility. Biophys. J. 2014, 102, 1907-1915.
-
(2014)
Biophys. J.
, vol.102
, pp. 1907-1915
-
-
Kramer, R.M.1
Shende, V.R.2
Motl, N.3
Pace, C.N.4
Scholtz, J.M.5
-
59
-
-
0041341327
-
Functional Properties of Succinylated and Acetylated Soy Protein
-
Franzen, K.L.; Kinsella, J.E. Functional Properties of Succinylated and Acetylated Soy Protein. J. Agric. Food Chem. 1976, 24, 788-795.
-
(1976)
J. Agric. Food Chem.
, vol.24
, pp. 788-795
-
-
Franzen, K.L.1
Kinsella, J.E.2
-
60
-
-
84864875884
-
The eightfold path to non-enzymatic RNA replication
-
Szostak, J. The eightfold path to non-enzymatic RNA replication. J. Syst. Chem. 2012, 3, doi:10.1186/1759-2208-3-2.
-
(2012)
J. Syst. Chem.
, vol.3
-
-
Szostak, J.1
-
61
-
-
0042702356
-
METAL IONS IN BIOLOGICAL SYSTEMS
-
Glusker, J.P.; Katz, A.K.; Bock, C.W. METAL IONS IN BIOLOGICAL SYSTEMS. Rigaku J. 1999, 16, 8-16.
-
(1999)
Rigaku J.
, vol.16
, pp. 8-16
-
-
Glusker, J.P.1
Katz, A.K.2
Bock, C.W.3
-
62
-
-
55949093712
-
Metal ions in biological catalysis: From enzyme databases to general principles
-
Andreini, C.; Bertini, I.; Cavallaro, G.; Holliday, G.L.; Thornton, J.M. Metal ions in biological catalysis: From enzyme databases to general principles. J. Biol. Inorg. Chem. 2008, 13, 1205-1218.
-
(2008)
J. Biol. Inorg. Chem.
, vol.13
, pp. 1205-1218
-
-
Andreini, C.1
Bertini, I.2
Cavallaro, G.3
Holliday, G.L.4
Thornton, J.M.5
-
63
-
-
0033167405
-
Non-Enzymatic RNA Hydrolysis Promoted by the Combined Catalytic Activity of Buffers and Magnesium Ions
-
AbouHaidar, M.G.; Ivanovb, I.G. Non-Enzymatic RNA Hydrolysis Promoted by the Combined Catalytic Activity of Buffers and Magnesium Ions. Z. Naturforsch. C 1999, 54, 542-548.
-
(1999)
Z. Naturforsch. C
, vol.54
, pp. 542-548
-
-
AbouHaidar, M.G.1
Ivanovb, I.G.2
-
64
-
-
0031007121
-
RNA-RNA Interactions Between Oligonucleotide Substrates for Aminoacylation
-
Henderson, B.S.; Schimmel, P. RNA-RNA Interactions Between Oligonucleotide Substrates for Aminoacylation. Bioorg. Med. Chem. 1997, 5, 1071-1079.
-
(1997)
Bioorg. Med. Chem.
, vol.5
, pp. 1071-1079
-
-
Henderson, B.S.1
Schimmel, P.2
-
65
-
-
79961119081
-
Polyphosphate-an ancient energy source and active metabolic regulator
-
Achbergerová, L.; Nahálka, J. Polyphosphate-an ancient energy source and active metabolic regulator. Microb. Cell Fact. 2011, 10, doi:10.1186/1475-2859-10-6.
-
(2011)
Microb. Cell Fact.
, vol.10
-
-
Achbergerová, L.1
Nahálka, J.2
-
66
-
-
0028967488
-
Inorganic Polyphosphate: Toward Making a Forgotten Polymer Unforgettable
-
Kornberg, A. Inorganic Polyphosphate: Toward Making a Forgotten Polymer Unforgettable. J. Bact. 1995, 177, 491-496.
-
(1995)
J. Bact.
, vol.177
, pp. 491-496
-
-
Kornberg, A.1
-
67
-
-
0028943076
-
Structure, Function and Evolution of Seryl-tRNA Synthetases: Implications for the Evolution of Aminoacyl-tRNA Synthetases and the Genetic Code
-
Härtlein, M.; Cusack, S. Structure, Function and Evolution of Seryl-tRNA Synthetases: Implications for the Evolution of Aminoacyl-tRNA Synthetases and the Genetic Code. J. Mol. Evol. 1995, 40, 519-530.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 519-530
-
-
Härtlein, M.1
Cusack, S.2
-
68
-
-
0028338701
-
Phylogeny from function: Evidence from the molecular fossil record that tRNA originated in replication, not translation
-
Maizels, N.; Weiner, A.M. Phylogeny from function: Evidence from the molecular fossil record that tRNA originated in replication, not translation. Proc. Natl. Acad. Sci. USA 1994, 91, 6729-6734.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 6729-6734
-
-
Maizels, N.1
Weiner, A.M.2
-
69
-
-
0023449816
-
tRNA-like structures tag the 3' ends of genomic RNA molecules for replication: Implications for the origin of protein synthesis
-
Weiner, A.M.; Maizels, N. tRNA-like structures tag the 3' ends of genomic RNA molecules for replication: Implications for the origin of protein synthesis. Proc. Natl. Acad. Sci. USA 1987, 84, 7383-7387.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 7383-7387
-
-
Weiner, A.M.1
Maizels, N.2
-
70
-
-
84922070316
-
The Place of RNA in the Origin and Early Evolution of the Genetic Machinery
-
Wächtershäuser, G. The Place of RNA in the Origin and Early Evolution of the Genetic Machinery. Life 2014, 4, 1050-1091.
-
(2014)
Life
, vol.4
, pp. 1050-1091
-
-
Wächtershäuser, G.1
-
71
-
-
17844405021
-
Coevolution theory of the genetic code at age thirty
-
Wong, J.T.-F. Coevolution theory of the genetic code at age thirty. BioEssays 2005, 27, 416-425.
-
(2005)
BioEssays
, vol.27
, pp. 416-425
-
-
Wong, J.T.-F.1
-
72
-
-
84887261289
-
Vesicle Extrusion Through Polycarbonate Track-etched Membranes using a Hand-held Mini-extruder
-
Zhu, T.F.; Budin, I.; Szostak, J.W. Vesicle Extrusion Through Polycarbonate Track-etched Membranes using a Hand-held Mini-extruder. Meth. Enzymol. 2013, 533, 275-282.
-
(2013)
Meth. Enzymol.
, vol.533
, pp. 275-282
-
-
Zhu, T.F.1
Budin, I.2
Szostak, J.W.3
-
73
-
-
84906091500
-
Synthetic and Editing Mechanisms of Aminoacyl-tRNA Synthetases
-
Perona, J.J.; Gruic-Sovulj, I. Synthetic and Editing Mechanisms of Aminoacyl-tRNA Synthetases. Top. Curr. Chem. 2013, 344, 1-41.
-
(2013)
Top. Curr. Chem.
, vol.344
, pp. 1-41
-
-
Perona, J.J.1
Gruic-Sovulj, I.2
-
74
-
-
84868529168
-
Structural Diversity and Protein Engineering of the Aminoacyl-tRNA Synthetases
-
Perona, J.J.; Hadd, A. Structural Diversity and Protein Engineering of the Aminoacyl-tRNA Synthetases. Biochemistry 2013, 51, 8705-8729.
-
(2013)
Biochemistry
, vol.51
, pp. 8705-8729
-
-
Perona, J.J.1
Hadd, A.2
-
75
-
-
0037466332
-
Amino Acid Discrimination by a class I aminoacyl-tRNA synthetase specified by negative determinants
-
Bullock, T.; Uter, N.; Nissan, T.A.; Perona, J.J. Amino Acid Discrimination by a class I aminoacyl-tRNA synthetase specified by negative determinants. J. Mol. Biol. 2003, 328, 395-408.
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 395-408
-
-
Bullock, T.1
Uter, N.2
Nissan, T.A.3
Perona, J.J.4
-
76
-
-
80054804699
-
Allosteric Communication in Cysteinyl tRNA Synthetase A NETWORK OF DIRECT AND INDIRECT READOUT
-
Ghosh, A.; Sakaguchi, R.; Liu, C.; Vishveshwara, S.; Hou, Y.-M. Allosteric Communication in Cysteinyl tRNA Synthetase A NETWORK OF DIRECT AND INDIRECT READOUT. J. Biol. Chem. 2011, 286, 37721-37731.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 37721-37731
-
-
Ghosh, A.1
Sakaguchi, R.2
Liu, C.3
Vishveshwara, S.4
Hou, Y.-M.5
-
77
-
-
0028958967
-
tRNAs as prirner of reverse transcriptases
-
Marquet, R.; lsel, C.; Ehresmann, C.; Ehresmann, B. tRNAs as prirner of reverse transcriptases. Biochimie 1995, 77, 113-124.
-
(1995)
Biochimie
, vol.77
, pp. 113-124
-
-
Marquet, R.1
lsel, C.2
Ehresmann, C.3
Ehresmann, B.4
-
78
-
-
0001185873
-
An Essay towards solving a Problem in the Doctrine of Chance. By the late Rev. Mr. Bayes, F. R. S. communicated by Mr. Price, in a letter to John Canton, A. M. F. R. S
-
Bayes, T.; Price, R. An Essay towards solving a Problem in the Doctrine of Chance. By the late Rev. Mr. Bayes, F. R. S. communicated by Mr. Price, in a letter to John Canton, A. M. F. R. S. Philos. Trans. 1763, 53, 370-418.
-
(1763)
Philos. Trans.
, vol.53
, pp. 370-418
-
-
Bayes, T.1
Price, R.2
-
80
-
-
80052938979
-
The meaning of a minuscule ribozyme
-
Yarus, M. The meaning of a minuscule ribozyme. Phil. Trans. R. Soc. B 2011, 366, 2902-2909.
-
(2011)
Phil. Trans. R. Soc. B
, vol.366
, pp. 2902-2909
-
-
Yarus, M.1
-
81
-
-
79954508195
-
Catalyzed and Spontaneous Reactions on Ribozyme Ribose
-
Turk, R.M.; Illangasekare, M.; Yarus, M. Catalyzed and Spontaneous Reactions on Ribozyme Ribose. J. Am. Chem. Soc. 2011, 133, 6044-6050.
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 6044-6050
-
-
Turk, R.M.1
Illangasekare, M.2
Yarus, M.3
-
82
-
-
77949497062
-
Multiple translational products from a five-nucleotide ribozyme
-
Turk, R.M.; Chumachenkob, N.V.; Yarus, M. Multiple translational products from a five-nucleotide ribozyme. Proc. Natl. Acad. Sci. USA 2010, 107, 4585-4589.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 4585-4589
-
-
Turk, R.M.1
Chumachenkob, N.V.2
Yarus, M.3
-
84
-
-
72449163457
-
RNA-amino acid binding: A stereochemical era for the genetic code
-
Yarus, M.; Widmann, J.; Knight, R. RNA-amino acid binding: A stereochemical era for the genetic code. J. Mol. Evol. 2009, 69, 406-429.
-
(2009)
J. Mol. Evol.
, vol.69
, pp. 406-429
-
-
Yarus, M.1
Widmann, J.2
Knight, R.3
-
85
-
-
0030970582
-
23S rRNA Similarity from Selection for Peptidyl Transferase Mimicry
-
Welch, M.; Majerfeld, I.; Yarus, M. 23S rRNA Similarity from Selection for Peptidyl Transferase Mimicry. Biochemistry 1997, 36, 6614-6623.
-
(1997)
Biochemistry
, vol.36
, pp. 6614-6623
-
-
Welch, M.1
Majerfeld, I.2
Yarus, M.3
-
86
-
-
0028957112
-
An Inhibitor of Ribosomal Peptidyl Transferase Using Transition-State Analogy
-
Welch, M.; Chastang, J.; Yarus, M. An Inhibitor of Ribosomal Peptidyl Transferase Using Transition-State Analogy. Biochemtry 1995, 34, 385-390.
-
(1995)
Biochemtry
, vol.34
, pp. 385-390
-
-
Welch, M.1
Chastang, J.2
Yarus, M.3
-
87
-
-
67649662135
-
A flexizyme that selectively charges amino acids activated by a water-friendly leaving group
-
Niwa, N.; Yamagishi, Y.; Murakami, H.; Suga, H. A flexizyme that selectively charges amino acids activated by a water-friendly leaving group. Bioorg. Med. Chem. Lett. 2009, 19, 3892-3894.
-
(2009)
Bioorg. Med. Chem. Lett.
, vol.19
, pp. 3892-3894
-
-
Niwa, N.1
Yamagishi, Y.2
Murakami, H.3
Suga, H.4
-
88
-
-
84911474212
-
A cross-chiral RNA polymerase ribozyme
-
Sczepanski, J.T.; Joyce, G.F. A cross-chiral RNA polymerase ribozyme. Nature 2014, 515, 440-442.
-
(2014)
Nature
, vol.515
, pp. 440-442
-
-
Sczepanski, J.T.1
Joyce, G.F.2
-
89
-
-
61349193830
-
Self-Sustained Replication of an RNA Enzyme
-
Lincoln, T.A.; Joyce, G.F. Self-Sustained Replication of an RNA Enzyme. Science 2009, 323, 1229-1232.
-
(2009)
Science
, vol.323
, pp. 1229-1232
-
-
Lincoln, T.A.1
Joyce, G.F.2
-
90
-
-
80052475860
-
The structural basis of RNA-catalyzed RNA polymerization
-
Shechner, D.M.; Bartel, D.P. The structural basis of RNA-catalyzed RNA polymerization. Nat. Struct. Mol. Biol. 2011, 18, 1036-1042.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 1036-1042
-
-
Shechner, D.M.1
Bartel, D.P.2
-
91
-
-
0035906978
-
RNA-Catalyzed RNA Polymerization: Accurate and General RNA-Templated Primer Extension
-
Johnston, W.K.; Unrau, P.J.; Lawrence, M.S.; Glasner, M.E.; Bartel, D.P. RNA-Catalyzed RNA Polymerization: Accurate and General RNA-Templated Primer Extension. Science 2001, 292, 1319-1325.
-
(2001)
Science
, vol.292
, pp. 1319-1325
-
-
Johnston, W.K.1
Unrau, P.J.2
Lawrence, M.S.3
Glasner, M.E.4
Bartel, D.P.5
-
93
-
-
79953809654
-
Ribozyme-Catalyzed Transcription of an Active Ribozyme
-
Wochner, A.; Attwater, J.; Coulson, A.; Holliger, P. Ribozyme-Catalyzed Transcription of an Active Ribozyme. Science 2011, 332, 209-212.
-
(2011)
Science
, vol.332
, pp. 209-212
-
-
Wochner, A.1
Attwater, J.2
Coulson, A.3
Holliger, P.4
-
94
-
-
9344271130
-
The driving force for molecular evolution of translation
-
Noller, H. The driving force for molecular evolution of translation. RNA 2004, 10, 1833-1837.
-
(2004)
RNA
, vol.10
, pp. 1833-1837
-
-
Noller, H.1
-
95
-
-
0034637111
-
The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 Å Resolution
-
Ban, N.; Nissen, P.; Hansen, J.; Moore, P.; Steitz, T.A. The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 Å Resolution. Science 2000, 289, 905-919.
-
(2000)
Science
, vol.289
, pp. 905-919
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.4
Steitz, T.A.5
-
96
-
-
65649084094
-
RNA-dependent RNA switches in bacteria
-
Henkin, T.M. RNA-dependent RNA switches in bacteria. Meth. Mol. Biol. 2009, 540, 207-214.
-
(2009)
Meth. Mol. Biol.
, vol.540
, pp. 207-214
-
-
Henkin, T.M.1
-
97
-
-
0037143628
-
tRNA-mediated transcription antitermination in vitro: Codon-anticodon pairing independent of the ribosome
-
Grundy, F.J.; Winkler, W.C.; Henkin, T.M. tRNA-mediated transcription antitermination in vitro: Codon-anticodon pairing independent of the ribosome. Proc. Natl. Acad. Sci. USA 2002, 99, 11121-11126.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11121-11126
-
-
Grundy, F.J.1
Winkler, W.C.2
Henkin, T.M.3
-
98
-
-
84860788078
-
Gas-liquid transfer data used to analyze hydrophobic hydration and find the nature of the Kauzmann-Tanford hydrophobic factor
-
Baldwin, R.L. Gas-liquid transfer data used to analyze hydrophobic hydration and find the nature of the Kauzmann-Tanford hydrophobic factor. Proc. Natl. Acad. Sci. USA 2012, 109, 7310-7313.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 7310-7313
-
-
Baldwin, R.L.1
-
99
-
-
0008863560
-
Some Factors in the Interpretation of Protein Denaturation
-
Kauzmann, W. Some Factors in the Interpretation of Protein Denaturation. Adv. Protein Chem. 1959, 14, 1-63.
-
(1959)
Adv. Protein Chem.
, vol.14
, pp. 1-63
-
-
Kauzmann, W.1
|