메뉴 건너뛰기




Volumn 57, Issue 2, 2015, Pages 317-328

An ancient riboswitch class in bacteria regulates purine biosynthesis and one-carbon metabolism

Author keywords

[No Author keywords available]

Indexed keywords

5 AMINOIMIDAZOLE 4 CARBOXAMIDE RIBONUCLEOTIDE; 5 AMINOIMIDAZOLE 4 CARBOXAMIDE RIBOSIDE 5' TRIPHOSPHATE; BETA GALACTOSIDASE; FOLIC ACID; PURINE; RIBONUCLEOTIDE; UNCLASSIFIED DRUG; BACTERIAL RNA; PURINE DERIVATIVE; RIBOSWITCH;

EID: 84921493496     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2015.01.001     Document Type: Article
Times cited : (90)

References (60)
  • 1
    • 77955437093 scopus 로고    scopus 로고
    • A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate
    • Ames T.D., Rodionov D.A., Weinberg Z., Breaker R.R. A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate. Chem. Biol. 2010, 17:681-685.
    • (2010) Chem. Biol. , vol.17 , pp. 681-685
    • Ames, T.D.1    Rodionov, D.A.2    Weinberg, Z.3    Breaker, R.R.4
  • 6
    • 0019961116 scopus 로고
    • ZTP (5-amino 4-imidazole carboxamide riboside 5'-triphosphate): a proposed alarmone for 10-formyl-tetrahydrofolate deficiency
    • Bochner B.R., Ames B.N. ZTP (5-amino 4-imidazole carboxamide riboside 5'-triphosphate): a proposed alarmone for 10-formyl-tetrahydrofolate deficiency. Cell 1982, 29:929-937.
    • (1982) Cell , vol.29 , pp. 929-937
    • Bochner, B.R.1    Ames, B.N.2
  • 7
    • 8544247920 scopus 로고    scopus 로고
    • Alternative oxygen-dependent and oxygen-independent ribonucleotide reductases in Streptomyces: cross-regulation and physiological role in response to oxygen limitation
    • Borovok I., Gorovitz B., Yanku M., Schreiber R., Gust B., Chater K., Aharonowitz Y., Cohen G. Alternative oxygen-dependent and oxygen-independent ribonucleotide reductases in Streptomyces: cross-regulation and physiological role in response to oxygen limitation. Mol. Microbiol. 2004, 54:1022-1035.
    • (2004) Mol. Microbiol. , vol.54 , pp. 1022-1035
    • Borovok, I.1    Gorovitz, B.2    Yanku, M.3    Schreiber, R.4    Gust, B.5    Chater, K.6    Aharonowitz, Y.7    Cohen, G.8
  • 8
    • 70349199881 scopus 로고    scopus 로고
    • Riboswitches: from ancient gene-control systems to modern drug targets
    • Breaker R.R. Riboswitches: from ancient gene-control systems to modern drug targets. Future Microbiol. 2009, 4:771-773.
    • (2009) Future Microbiol. , vol.4 , pp. 771-773
    • Breaker, R.R.1
  • 9
    • 80052973462 scopus 로고    scopus 로고
    • Prospects for riboswitch discovery and analysis
    • Breaker R.R. Prospects for riboswitch discovery and analysis. Mol. Cell 2011, 43:867-879.
    • (2011) Mol. Cell , vol.43 , pp. 867-879
    • Breaker, R.R.1
  • 11
    • 0035208293 scopus 로고    scopus 로고
    • The mechanism of action of ribavirin: lethal mutagenesis of RNA virus genomes mediated by the viral RNA-dependent RNA polymerase
    • Cameron C.E., Castro C. The mechanism of action of ribavirin: lethal mutagenesis of RNA virus genomes mediated by the viral RNA-dependent RNA polymerase. Curr. Opin. Infect. Dis. 2001, 14:757-764.
    • (2001) Curr. Opin. Infect. Dis. , vol.14 , pp. 757-764
    • Cameron, C.E.1    Castro, C.2
  • 12
    • 84871927537 scopus 로고    scopus 로고
    • Para-aminosalicylic acid acts as an alternative substrate of folate metabolism in Mycobacterium tuberculosis
    • Chakraborty S., Gruber T., Barry C.E., Boshoff H.I., Rhee K.Y. Para-aminosalicylic acid acts as an alternative substrate of folate metabolism in Mycobacterium tuberculosis. Science 2013, 339:88-91.
    • (2013) Science , vol.339 , pp. 88-91
    • Chakraborty, S.1    Gruber, T.2    Barry, C.E.3    Boshoff, H.I.4    Rhee, K.Y.5
  • 13
    • 0026755390 scopus 로고
    • Coregulation of purine and histidine biosynthesis by the transcriptional activators BAS1 and BAS2
    • Daignan-Fornier B., Fink G.R. Coregulation of purine and histidine biosynthesis by the transcriptional activators BAS1 and BAS2. Proc. Natl. Acad. Sci. USA 1992, 89:6746-6750.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 6746-6750
    • Daignan-Fornier, B.1    Fink, G.R.2
  • 14
    • 84870178298 scopus 로고    scopus 로고
    • 5-Aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-Monophosphate (AICAR), a Highly Conserved Purine Intermediate with Multiple Effects
    • Daignan-Fornier B., Pinson B. 5-Aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-Monophosphate (AICAR), a Highly Conserved Purine Intermediate with Multiple Effects. Metabolites 2012, 2:292-302.
    • (2012) Metabolites , vol.2 , pp. 292-302
    • Daignan-Fornier, B.1    Pinson, B.2
  • 15
    • 0023769808 scopus 로고
    • Structure and energetics of ligand binding to proteins: Escherichia coli dihydrofolate reductase-trimethoprim, a drug-receptor system
    • Dauber-Osguthorpe P., Roberts V.A., Osguthorpe D.J., Wolff J., Genest M., Hagler A.T. Structure and energetics of ligand binding to proteins: Escherichia coli dihydrofolate reductase-trimethoprim, a drug-receptor system. Proteins 1988, 4:31-47.
    • (1988) Proteins , vol.4 , pp. 31-47
    • Dauber-Osguthorpe, P.1    Roberts, V.A.2    Osguthorpe, D.J.3    Wolff, J.4    Genest, M.5    Hagler, A.T.6
  • 16
    • 29144456027 scopus 로고    scopus 로고
    • Proteome analysis of Streptococcus thermophilus grown in milk reveals pyruvate formate-lyase as the major upregulated protein
    • Derzelle S., Bolotin A., Mistou M.Y., Rul F. Proteome analysis of Streptococcus thermophilus grown in milk reveals pyruvate formate-lyase as the major upregulated protein. Appl. Environ. Microbiol. 2005, 71:8597-8605.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8597-8605
    • Derzelle, S.1    Bolotin, A.2    Mistou, M.Y.3    Rul, F.4
  • 17
    • 33845626641 scopus 로고    scopus 로고
    • How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria
    • Deutscher J., Francke C., Postma P.W. How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria. Microbiol. Mol. Biol. Rev. 2006, 70:939-1031.
    • (2006) Microbiol. Mol. Biol. Rev. , vol.70 , pp. 939-1031
    • Deutscher, J.1    Francke, C.2    Postma, P.W.3
  • 18
    • 0037032414 scopus 로고    scopus 로고
    • Protein kinase inhibitors block the stimulation of the AMP-activated protein kinase by 5-amino-4-imidazolecarboxamide riboside
    • Fryer L.G., Parbu-Patel A., Carling D. Protein kinase inhibitors block the stimulation of the AMP-activated protein kinase by 5-amino-4-imidazolecarboxamide riboside. FEBS Lett. 2002, 531:189-192.
    • (2002) FEBS Lett. , vol.531 , pp. 189-192
    • Fryer, L.G.1    Parbu-Patel, A.2    Carling, D.3
  • 19
    • 0033120034 scopus 로고    scopus 로고
    • The mechanism of intrinsic transcription termination
    • Gusarov I., Nudler E. The mechanism of intrinsic transcription termination. Mol. Cell 1999, 3:495-504.
    • (1999) Mol. Cell , vol.3 , pp. 495-504
    • Gusarov, I.1    Nudler, E.2
  • 20
    • 78650893958 scopus 로고    scopus 로고
    • Role of purine biosynthesis in Bacillus anthracis pathogenesis and virulence
    • Jenkins A., Cote C., Twenhafel N., Merkel T., Bozue J., Welkos S. Role of purine biosynthesis in Bacillus anthracis pathogenesis and virulence. Infect. Immun. 2011, 79:153-166.
    • (2011) Infect. Immun. , vol.79 , pp. 153-166
    • Jenkins, A.1    Cote, C.2    Twenhafel, N.3    Merkel, T.4    Bozue, J.5    Welkos, S.6
  • 21
    • 0014881586 scopus 로고
    • Glycine formation via threonine and serine aldolase. Its interrelation with the pyruvate formate lyase pathway of one-carbon unit synthesis in Clostridium kluyveri
    • Jungermann K.A., Schmidt W., Kirchniawy F.H., Rupprecht E.H., Thauer R.K. Glycine formation via threonine and serine aldolase. Its interrelation with the pyruvate formate lyase pathway of one-carbon unit synthesis in Clostridium kluyveri. Eur. J. Biochem. 1970, 16:424-429.
    • (1970) Eur. J. Biochem. , vol.16 , pp. 424-429
    • Jungermann, K.A.1    Schmidt, W.2    Kirchniawy, F.H.3    Rupprecht, E.H.4    Thauer, R.K.5
  • 22
  • 23
    • 0033743958 scopus 로고    scopus 로고
    • Resistance tomethotrexate due to AcrAB-dependent export from Escherichia coli
    • Kopytek S.J., Dyer J.C., Knapp G.S., Hu J.C. Resistance tomethotrexate due to AcrAB-dependent export from Escherichia coli. Antimicrob. Agents Chemother. 2000, 44:3210-3212.
    • (2000) Antimicrob. Agents Chemother. , vol.44 , pp. 3210-3212
    • Kopytek, S.J.1    Dyer, J.C.2    Knapp, G.S.3    Hu, J.C.4
  • 24
    • 79955755022 scopus 로고    scopus 로고
    • AMPK and Akt determine apoptotic cell death following perturbations of one-carbon metabolism by regulating ER stress in acute lymphoblastic leukemia
    • Kuznetsov J.N., Leclerc G.J., Leclerc G.M., Barredo J.C. AMPK and Akt determine apoptotic cell death following perturbations of one-carbon metabolism by regulating ER stress in acute lymphoblastic leukemia. Mol. Cancer Ther. 2011, 10:437-447.
    • (2011) Mol. Cancer Ther. , vol.10 , pp. 437-447
    • Kuznetsov, J.N.1    Leclerc, G.J.2    Leclerc, G.M.3    Barredo, J.C.4
  • 25
    • 77955867163 scopus 로고    scopus 로고
    • Antifolate-induced depletion of intracellular glycine and purines inhibits thymineless death in E. coli
    • Kwon Y.K., Higgins M.B., Rabinowitz J.D. Antifolate-induced depletion of intracellular glycine and purines inhibits thymineless death in E. coli. ACS Chem. Biol. 2010, 5:787-795.
    • (2010) ACS Chem. Biol. , vol.5 , pp. 787-795
    • Kwon, Y.K.1    Higgins, M.B.2    Rabinowitz, J.D.3
  • 27
    • 77955630859 scopus 로고    scopus 로고
    • An allosteric self-splicing ribozyme triggered by a bacterial second messenger
    • Lee E.R., Baker J.L., Weinberg Z., Sudarsan N., Breaker R.R. An allosteric self-splicing ribozyme triggered by a bacterial second messenger. Science 2010, 329:845-848.
    • (2010) Science , vol.329 , pp. 845-848
    • Lee, E.R.1    Baker, J.L.2    Weinberg, Z.3    Sudarsan, N.4    Breaker, R.R.5
  • 28
    • 84881177291 scopus 로고    scopus 로고
    • Serine, glycine and one-carbon units: cancer metabolism in full circle
    • Locasale J.W. Serine, glycine and one-carbon units: cancer metabolism in full circle. Nat. Rev. Cancer 2013, 13:572-583.
    • (2013) Nat. Rev. Cancer , vol.13 , pp. 572-583
    • Locasale, J.W.1
  • 29
    • 0035103620 scopus 로고    scopus 로고
    • Current understanding of methotrexate pharmacology and efficacy in acute leukemias. Use of newer antifolates in clinical trials
    • Longo-Sorbello G.S., Bertino J.R. Current understanding of methotrexate pharmacology and efficacy in acute leukemias. Use of newer antifolates in clinical trials. Haematologica 2001, 86:121-127.
    • (2001) Haematologica , vol.86 , pp. 121-127
    • Longo-Sorbello, G.S.1    Bertino, J.R.2
  • 34
    • 67149135194 scopus 로고    scopus 로고
    • Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways
    • Pinson B., Vaur S., Sagot I., Coulpier F., Lemoine S., Daignan-Fornier B. Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways. Genes Dev. 2009, 23:1399-1407.
    • (2009) Genes Dev. , vol.23 , pp. 1399-1407
    • Pinson, B.1    Vaur, S.2    Sagot, I.3    Coulpier, F.4    Lemoine, S.5    Daignan-Fornier, B.6
  • 35
    • 20444386922 scopus 로고    scopus 로고
    • Revisiting purine-histidine cross-pathway regulation in Saccharomyces cerevisiae: a central role for a small molecule
    • Rébora K., Laloo B., Daignan-Fornier B. Revisiting purine-histidine cross-pathway regulation in Saccharomyces cerevisiae: a central role for a small molecule. Genetics 2005, 170:61-70.
    • (2005) Genetics , vol.170 , pp. 61-70
    • Rébora, K.1    Laloo, B.2    Daignan-Fornier, B.3
  • 36
    • 20644446065 scopus 로고    scopus 로고
    • Identification of a bacterial regulatory system for ribonucleotide reductases by phylogenetic profiling
    • Rodionov D.A., Gelfand M.S. Identification of a bacterial regulatory system for ribonucleotide reductases by phylogenetic profiling. Trends Genet. 2005, 21:385-389.
    • (2005) Trends Genet. , vol.21 , pp. 385-389
    • Rodionov, D.A.1    Gelfand, M.S.2
  • 37
    • 0025695333 scopus 로고
    • Role of purine biosynthetic intermediates in response to folate stress in Escherichia coli
    • Rohlman C.E., Matthews R.G. Role of purine biosynthetic intermediates in response to folate stress in Escherichia coli. J.Bacteriol. 1990, 172:7200-7210.
    • (1990) J.Bacteriol. , vol.172 , pp. 7200-7210
    • Rohlman, C.E.1    Matthews, R.G.2
  • 38
    • 85047279405 scopus 로고
    • The enzymatic synthesis of 5-amino-4-imidazolecarboxamide riboside triphosphate (ZTP)
    • Sabina R.L., Holmes E.W., Becker M.A. The enzymatic synthesis of 5-amino-4-imidazolecarboxamide riboside triphosphate (ZTP). Science 1984, 223:1193-1195.
    • (1984) Science , vol.223 , pp. 1193-1195
    • Sabina, R.L.1    Holmes, E.W.2    Becker, M.A.3
  • 39
    • 0021824214 scopus 로고
    • 5-Amino-4-imidazolecarboxamide riboside (Z-riboside) metabolism in eukaryotic cells
    • Sabina R.L., Patterson D., Holmes E.W. 5-Amino-4-imidazolecarboxamide riboside (Z-riboside) metabolism in eukaryotic cells. J.Biol. Chem. 1985, 260:6107-6114.
    • (1985) J.Biol. Chem. , vol.260 , pp. 6107-6114
    • Sabina, R.L.1    Patterson, D.2    Holmes, E.W.3
  • 40
    • 14644412417 scopus 로고    scopus 로고
    • Formate and its role in hydrogen production in Escherichia coli
    • Sawers R.G. Formate and its role in hydrogen production in Escherichia coli. Biochem. Soc. Trans. 2005, 33:42-46.
    • (2005) Biochem. Soc. Trans. , vol.33 , pp. 42-46
    • Sawers, R.G.1
  • 41
    • 0001059643 scopus 로고    scopus 로고
    • Mechanisms of folate-requiring enzymes in one-carbonmetabolism
    • Academic Press, M. Sinnott (Ed.)
    • Schirch V. Mechanisms of folate-requiring enzymes in one-carbonmetabolism. Comprehensive Biological Catalysis 1998, 211-252. Academic Press. M. Sinnott (Ed.).
    • (1998) Comprehensive Biological Catalysis , pp. 211-252
    • Schirch, V.1
  • 42
    • 84872543206 scopus 로고    scopus 로고
    • A decade of riboswitches
    • Serganov A., Nudler E. A decade of riboswitches. Cell 2013, 152:17-24.
    • (2013) Cell , vol.152 , pp. 17-24
    • Serganov, A.1    Nudler, E.2
  • 43
    • 84861405805 scopus 로고    scopus 로고
    • Metabolite recognition principles and molecular mechanisms underlying riboswitch function
    • Serganov A., Patel D.J. Metabolite recognition principles and molecular mechanisms underlying riboswitch function. Annu. Rev. Biophys. 2012, 41:343-370.
    • (2012) Annu. Rev. Biophys. , vol.41 , pp. 343-370
    • Serganov, A.1    Patel, D.J.2
  • 44
    • 0032831634 scopus 로고    scopus 로고
    • Relationship between internucleotide linkage geometry and the stability of RNA
    • Soukup G.A., Breaker R.R. Relationship between internucleotide linkage geometry and the stability of RNA. RNA 1999, 5:1308-1325.
    • (1999) RNA , vol.5 , pp. 1308-1325
    • Soukup, G.A.1    Breaker, R.R.2
  • 45
    • 0016825910 scopus 로고
    • Guanosine 5'-diphosphate 3'-diphosphate (ppGpp): positive effector for histidine operon transcription and general signal for amino-acid deficiency
    • Stephens J.C., Artz S.W., Ames B.N. Guanosine 5'-diphosphate 3'-diphosphate (ppGpp): positive effector for histidine operon transcription and general signal for amino-acid deficiency. Proc. Natl. Acad. Sci. USA 1975, 72:4389-4393.
    • (1975) Proc. Natl. Acad. Sci. USA , vol.72 , pp. 4389-4393
    • Stephens, J.C.1    Artz, S.W.2    Ames, B.N.3
  • 49
    • 0028359552 scopus 로고
    • Characterisation of5'-AMP-activated protein kinase in human liver using specific peptide substrates and the effects of 5'-AMP analogues on enzyme activity
    • Sullivan J.E., Carey F., Carling D., Beri R.K. Characterisation of5'-AMP-activated protein kinase in human liver using specific peptide substrates and the effects of 5'-AMP analogues on enzyme activity. Biochem. Biophys. Res. Commun. 1994, 200:1551-1556.
    • (1994) Biochem. Biophys. Res. Commun. , vol.200 , pp. 1551-1556
    • Sullivan, J.E.1    Carey, F.2    Carling, D.3    Beri, R.K.4
  • 51
    • 80054074740 scopus 로고    scopus 로고
    • The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer
    • Trausch J.J., Ceres P., Reyes F.E., Batey R.T. The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer. Structure 2011, 19:1413-1423.
    • (2011) Structure , vol.19 , pp. 1413-1423
    • Trausch, J.J.1    Ceres, P.2    Reyes, F.E.3    Batey, R.T.4
  • 53
    • 77951606278 scopus 로고    scopus 로고
    • Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
    • Weinberg Z., Wang J.X., Bogue J., Yang J., Corbino K., Moy R.H., Breaker R.R. Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes. Genome Biol. 2010, 11:R31.
    • (2010) Genome Biol. , vol.11 , pp. R31
    • Weinberg, Z.1    Wang, J.X.2    Bogue, J.3    Yang, J.4    Corbino, K.5    Moy, R.H.6    Breaker, R.R.7
  • 54
    • 0017232521 scopus 로고
    • Coenzymes as fossils of an earlier metabolic state
    • White H.B. Coenzymes as fossils of an earlier metabolic state. J.Mol. Evol. 1976, 7:101-104.
    • (1976) J.Mol. Evol. , vol.7 , pp. 101-104
    • White, H.B.1
  • 55
    • 26444620938 scopus 로고    scopus 로고
    • The kinetics of ligand binding by an adenine-sensing riboswitch
    • Wickiser J.K., Cheah M.T., Breaker R.R., Crothers D.M. The kinetics of ligand binding by an adenine-sensing riboswitch. Biochemistry 2005, 44:13404-13414.
    • (2005) Biochemistry , vol.44 , pp. 13404-13414
    • Wickiser, J.K.1    Cheah, M.T.2    Breaker, R.R.3    Crothers, D.M.4
  • 56
    • 15944382675 scopus 로고    scopus 로고
    • The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
    • Wickiser J.K., Winkler W.C., Breaker R.R., Crothers D.M. The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch. Mol. Cell 2005, 18:49-60.
    • (2005) Mol. Cell , vol.18 , pp. 49-60
    • Wickiser, J.K.1    Winkler, W.C.2    Breaker, R.R.3    Crothers, D.M.4
  • 59
    • 0033597435 scopus 로고    scopus 로고
    • Mechanism of intrinsic transcription termination and antitermination
    • Yarnell W.S., Roberts J.W. Mechanism of intrinsic transcription termination and antitermination. Science 1999, 284:611-615.
    • (1999) Science , vol.284 , pp. 611-615
    • Yarnell, W.S.1    Roberts, J.W.2
  • 60
    • 84886953565 scopus 로고    scopus 로고
    • Phenotypic screens as a renewed approach for drug discovery
    • Zheng W., Thorne N., McKew J.C. Phenotypic screens as a renewed approach for drug discovery. Drug Discov. Today 2013, 18:1067-1073.
    • (2013) Drug Discov. Today , vol.18 , pp. 1067-1073
    • Zheng, W.1    Thorne, N.2    McKew, J.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.