A roadmap to applying optogenetics in neuroscience

Methods in Molecular Biology

Volumn 1148, Issue , 2014, Pages 129-147

  Fois, Consuelo ^a   Prouvot, Pierre Hugues ^a   Stroh, Albrecht ^a  

^a NONE

Author keywords

ChR2; Light stimulation; Neuroscience; Optogenetics; Viral gene transfer

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; BRAIN ELECTROPHYSIOLOGY; GENE TARGETING; HYPOTHESIS; MEDICAL RESEARCH; NEUROSCIENCE; NONHUMAN; OPTOGENETICS; PRIORITY JOURNAL; VIRAL GENE DELIVERY SYSTEM; ANIMAL; ANIMAL BEHAVIOR; BIOSYNTHESIS; BRAIN; CHANNEL GATING; GENE VECTOR; GENETIC TRANSDUCTION; GENETICS; HUMAN; LIGHT; METABOLISM; PHOTOCHEMISTRY; RADIATION RESPONSE; TRANSCRIPTION INITIATION;

RHODOPSIN;

ANIMALS; BEHAVIOR, ANIMAL; BRAIN; GENETIC VECTORS; HUMANS; ION CHANNEL GATING; LIGHT; NEUROSCIENCES; OPTOGENETICS; PHOTOCHEMICAL PROCESSES; RHODOPSIN; TRANSCRIPTIONAL ACTIVATION; TRANSDUCTION, GENETIC;

EID: 84921260302     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-0470-9_9     Document Type: Article

References (53)

1. Adamantidis AR, Zhang F, Aravanis AM, Deisseroth K, de Lecea L (2007) Neural substrates of awakening probed with optogenetic control of hypocretin neurons. Nature 450: 420–424
2. Airan RD, Thompson KR, Fenno LE, Bernstein H, Deisseroth K (2009) Temporally precise in vivo control of intracellular signalling. Nature 458:1025–1029
3. Akerboom J, Chen TW, Wardill TJ, Tian L, Marvin JS, Mutlu S, Calderon NC, Esposti F, Borghuis BG, Sun XR et al (2012) Optimization of a GCaMP calcium indicator for neural activity imaging. J Neurosci 32:13819–13840
4. Aravanis AM, Wang LP, Zhang F, Meltzer LA, Mogri MZ, Schneider MB, Deisseroth K (2007) An optical neural interface: in vivo control of rodent motor cortex with integrated fiberoptic and optogenetic technology. J Neural Eng 4:S143–S156
5. Arenkiel BR, Peca J, Davison IG, Feliciano C, Deisseroth K, Augustine GJ, Ehlers MD, Feng G (2007) In vivo light-induced activation of neural circuitry in transgenic mice expressing channelrhodopsin-2. Neuron 54:205–218
6. Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, Oertner TG (2011) High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels. Proc Natl Acad Sci U S A 108:7595–7600
7. Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K (2005) Millisecond-timescale, genetically targeted optical control of neural activity. Nat Neurosci 8:1263–1268
8. Cardin JA, Carlen M, Meletis K, Knoblich U, Zhang F, Deisseroth K, Tsai LH, Moore CI (2009) Driving fast-spiking cells induces gamma rhythm and controls sensory responses. Nature 459:663–667
9. Chow BY, Han X, Dobry AS, Qian X, Chuong AS, Li M, Henninger MA, Belfort GM, Lin Y, Monahan PE, Boyden ES (2010) Highperformance genetically targetable optical neural silencing by light-driven proton pumps. Nature 463:98–102
10. Diester I, Kaufman MT, Mogri M, Pashaie R, Goo W, Yizhar O, Ramakrishnan C, Deisseroth K, Shenoy KV (2011) An optogenetic toolbox designed for primates. Nat Neurosci 14: 387–397
11. Dittgen T, Nimmerjahn A, Komai S, Licznerski P, Waters J, Margrie TW, Helmchen F, Denk W, Brecht M, Osten P (2004) Lentivirusbased genetic manipulations of cortical neurons and their optical and electrophysiological monitoring in vivo. Proc Natl Acad Sci U S A 101:18206–18211
12. Fenno L, Yizhar O, Deisseroth K (2011) The development and application of optogenetics. Ann Rev Neurosci 34:389–412
13. Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (2009) Optical deconstruction of parkinsonian neural circuitry. Science 324:354–359
14. Gradinaru V, Thompson KR, Zhang F, Mogri M, Kay K, Schneider MB, Deisseroth K (2007) Targeting and readout strategies for fast optical neural control in vitro and in vivo. J Neurosci 27:14231–14238
15. Gradina ru V, Zhang F, Ramakrishnan C, Mattis J, Prakash R, Diester I, Goshen I, Thompson KR, Deisseroth K (2010) Molecular and cellular approaches for diversifying and extending optogenetics. Cell 141: 154–165
16. Grienberger C, Konnerth A (2012) Imaging calcium in neurons. Neuron 73:862–885
17. Gunaydin LA, Yizhar O, Berndt A, Sohal VS, Deisseroth K, Hegemann P (2010) Ultrafast optogenetic control. Nat Neurosci 13: 387–392
18. Han X, Qian X, Bernstein JG, Zhou HH, Franzesi GT, Stern P, Bronson RT, Graybiel AM, Desimone R, Boyden ES (2009) Millisecond-timescale optical control of neural dynamics in the nonhuman primate brain. Neuron 62:191–198
19. Jakobsson J, Ericson C, Jansson M, Bjork E, Lundberg C (2003) Targeted transgene expression in rat brain using lentiviral vectors. J Neurosci Res 73:876–885
20. Johansen JP, Hamanaka H, Monfils MH, Behnia R, Deisseroth K, Blair HT, LeDoux JE (2010) Optical activation of lateral amygdale pyramidal cells instructs associative fear learning. Proc Natl Acad Sci U S A 107: 12692–12697
21. Kajikawa Y, Schroeder CE (2011) How local is the local field potential? Neuron 72:847–858
22. Katz Y, Yizhar O, Staiger J, Lampl I (2013) Optopatcher – an electrode holder for simultaneous intracellular patch-clamp recording and optical manipulation. J Neurosci Methods 214:113–117
23. Knobloch HS, Charlet A, Hoffmann LC, Eliava M, Khrulev S, Cetin AH, Osten P, Schwarz MK, Seeburg PH, Stoop R, Grinevich V (2012) Evoked axonal oxytocin release in the central amygdala attenuates fear response. Neuron 73:553–566
24. Kravitz AV, Freeze BS, Parker PR, Kay K, Thwin MT, Deisseroth K, Kreitzer AC (2010) Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry. Nature 466:622–626
25. Lawlor PA, Bland RJ, Mouravlev A, Young D, During MJ (2009) Efficient gene delivery and selective transduction of glial cells in the mammalian brain by AAV serotypes isolated from nonhuman primates. Mol Ther 17:1692–1702
26. Lee JH, Durand DR, Gradinaru V, Zhang F, Goshen I, Kim DS, Fenno LE, Ramakrishnan C, Deisseroth K (2010) Global and local fMRI signals driven by neurons defined optogenetically by type and wiring. Nature 465(7299): 788–792
27. Lee SH, Kwan AC, Zhang S, Phoumthipphavong V, Flannery JG, Masmanidis SC, Taniguchi H, Huang ZJ, Zhang F, Boyden ES et al (2012) Activation of specific interneurons improves V1 feature selectivity and visual perception. Nature 488: 379–383
28. Lin JY, Lin MZ, Steinbach P, Tsien RY (2009) Characterization of engineered channelrhodopsin variants with improved properties and kinetics. Biophys J 96:1803–1814
29. Logothetis NK, Pauls J, Augath M, Trinath T, Oeltermann A (2001) Neurophysiological investigation of the basis of the fMRI signal. Nature 412:150–157
30. Lutz C, Otis TS, DeSars V, Charpak S, DiGregorio DA, Emiliani V (2008) Holographic photolysis of caged neurotransmitters. Nat Methods 5:821–827
31. Miyashita T, Shao YR, Chung J, Pourzia O, Feldman DE (2013) Long-term channelrhodopsin- 2 (ChR2) expression can induce abnormal axonal morphology and targeting in cerebral cortex. Front Neural Circuit 7:8
32. Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, Ollig D, Hegemann P, Bamberg E (2003) Channelrhodopsin-2, a directly light gated cation-selective membrane channel. Proc Natl Acad Sci USA 100: 13940–13945
33. Nagel G, Brauner M, Liewald JF, Adeishvili N, Bamberg E, Gottschalk A (2005) Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioural responses. Curr Biol 15:2279–2284
34. Oh E, Maejima T, Liu C, Deneris E, Herlitze S (2010) Substitution of 5-HT1A receptor signalling by a light-activated G protein-coupled receptor. J Biol Chem 285:30825–30836
35. Pac ker AM, Peterka DS, Hirtz JJ, Prakash R, Deisseroth K, Yuste R (2012) Two-photon optogenetics of dendritic spines and neural circuits. Nat Methods 9:1202–1205
36. Paxinos G, Franklin KBJ (2001) The Mouse Brain in Stereotaxic Coordinates, 2nd edn. Academic Press, San Diego
37. Papagiakoumou E, Anselmi F, Begue A, de Sars V, Gluckstad J, IsacoffEY, Emiliani V (2010) Scanless two-photon excitation of channelrhodopsin-2. Nat Methods 7:848–854
38. Prakash R, Yizhar O, Grewe B, Ramakrishnan C, Wang N, Goshen I, Packer AM, Peterka DS, Yuste R, Schnitzer MJ, Deisseroth K (2012) Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation. Nat Methods 9:1171–1179
39. Prigge M, Schneider F, Tsunoda SP, Shilyansky C, Wietek J, Deisseroth K, Hegemann P(2012) Color-tuned channelrhodopsins for multiwavelength optogenetics. J Biol Chem 287:31804–31812
40. Rickgauer JP, Tank DW (2009) Two-photon excitation of channelrhodopsin-2 at saturation. Proc Natl Acad Sci U S A 106:15025–15030
41. Rochefort NL, Jia H, Konnerth A (2008) Calcium imaging in the living brain: Prospects for molecular medicine. Trends Mol Med 14:389–399
42. Sakmann B, Neher E (1984) Patch clamp techniques for studying ionic channels in excitable membranes. Ann Rev Physiol 46: 455–472
43. Stosiek C, Garaschuk O, HolthoffK, Konnerth A (2003) In vivo two-photon calcium imaging of neuronal networks. Proc Natl Acad Sci U S A 100:7319–7324
44. Stroh A, Adelsberger H, Groh A, Ruhlmann C, Fischer S, Schierloh A, Deisseroth K, Konnerth A (2013) Making waves: Initiation and propagation of corticothalamic ca(2+) waves in vivo. Neuron 77:1136–1150
45. Stroh A, Tsai HC, Wang LP, Zhang F, Kressel J, Aravanis A, Santhanam N, Deisseroth K, Konnerth A, Schneider MB (2011) Tracking stem cell differentiation in the setting of automated optogenetic stimulation. Stem Cells 29:78–88
46. Stuber GD, Britt JP, Bonci A (2012) Optogenetic modulation of neural circuits that underlie reward seeking. Biol Psychiatry 71: 1061–1067
47. Tye KM, Prakash R, Kim SY, Fenno LE, Grosenick L, Zarabi H, Thompson KR, Gradinaru V, Ramakrishnan C, Deisseroth K (2011) Amygdala circuitry mediating reversible and bidirectional control of anxiety. Nature 471:358–362
48. Vaziri A, Emiliani V (2012) Reshaping the optical dimension in optogenetics. Curr Opin Neurobiol 22:128–137
49. Wang J, Wagner F, Borton DA, Zhang J, Ozden I, Burwell RD, Nurmikko AV, Van WR, Diester I, Deisseroth K (2012) Integrated device for combined optical neuromodulation and electrical recording for chronic in vivo applications. J Neural Eng 9:016001
50. Wentz CT, Bernstein JG, Monahan P, Guerra A, Rodriguez A, Boyden ES (2011) A wirelessly powered and controlled device for optical neural control of freely-behaving animals. J Neural Eng 8:046021
51. Witten IB, Lin SC, Brodsky M, Prakash R, Diester I, Anikeeva P, Gradinaru V, Ramakrishnan C, Deisseroth K (2010) Cholinergic interneurons control local circuit activity and cocaine conditioning. Science 330:1677–1681
52. Yizhar O, Fenno LE, Prigge M, Schneider F, Davidson TJ, O'Shea DJ, Sohal VS, Goshen I, Finkelstein J, Paz JT et al (2011) Neocortical excitation/inhibition balance in information processing and social dysfunction. Nature 477:171–178
53. Zeng H, Madisen L (2012) Mouse transgenic approaches in optogenetics. Prog Brain Res 196:193–213