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Volumn 84, Issue , 2015, Pages 1-13

Differential introgression and effective size of marker type influence phylogenetic inference of a recently divergent avian group (Phasianidae: Tympanuchus)

Author keywords

Effective population size; Hybridization; Mito nuclear discordance; Sexual selection; Species tree; Z chromosome

Indexed keywords

AVES; PHASIANIDAE; TETRAONIDAE; TYMPANUCHUS; VASCONCELLEA CANDICANS;

EID: 84920872148     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2014.12.012     Document Type: Article
Times cited : (18)

References (107)
  • 1
    • 0034879016 scopus 로고    scopus 로고
    • Occurrence of greater sage-grouse×sharp-tailed grouse hybrids in Alberta
    • Aldridge C.L., Oyler-McCance S.J., Brigham R.M. Occurrence of greater sage-grouse×sharp-tailed grouse hybrids in Alberta. Condor 2001, 103:657-660.
    • (2001) Condor , vol.103 , pp. 657-660
    • Aldridge, C.L.1    Oyler-McCance, S.J.2    Brigham, R.M.3
  • 2
    • 49649129741 scopus 로고    scopus 로고
    • LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method
    • Antao T., Lopes A., Lopes R., Beja-Pereira A., Luikart G. LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method. BMC BioInfo. 2008, 9:323.
    • (2008) BMC BioInfo. , vol.9 , pp. 323
    • Antao, T.1    Lopes, A.2    Lopes, R.3    Beja-Pereira, A.4    Luikart, G.5
  • 3
    • 84885859105 scopus 로고    scopus 로고
    • Evolution of postzygotic reproductive isolation in galliform birds: analysis of first and second hybrid generations and backcrosses
    • Arrieta R.S., Lijtmaer D.A., Tubaro P.L. Evolution of postzygotic reproductive isolation in galliform birds: analysis of first and second hybrid generations and backcrosses. Biol. J. Linnean Soc. 2013, 110:528-542.
    • (2013) Biol. J. Linnean Soc. , vol.110 , pp. 528-542
    • Arrieta, R.S.1    Lijtmaer, D.A.2    Tubaro, P.L.3
  • 4
    • 79960018817 scopus 로고    scopus 로고
    • Demography of female Greater Prairie-Chickens in unfragmented grasslands in Kansas
    • Augustine J.K., Sandercock B.K. Demography of female Greater Prairie-Chickens in unfragmented grasslands in Kansas. Avian Conserv. Ecol. 2011, 6:2. 10.5751/ACE-00429-060102.
    • (2011) Avian Conserv. Ecol. , vol.6 , pp. 2
    • Augustine, J.K.1    Sandercock, B.K.2
  • 5
    • 2942526369 scopus 로고    scopus 로고
    • Male-biased mutation rate and divergence in autosomal, Z-linked, and W-linked introns of chicken and turkey
    • Axelsson E., Smith N.G.C., Sundström H., Berlin S., Ellegren H. Male-biased mutation rate and divergence in autosomal, Z-linked, and W-linked introns of chicken and turkey. Mol. Biol. Evol. 2004, 21:1538-1547.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1538-1547
    • Axelsson, E.1    Smith, N.G.C.2    Sundström, H.3    Berlin, S.4    Ellegren, H.5
  • 6
    • 79953908387 scopus 로고    scopus 로고
    • Sex - and species-biased gene flow in a spotted eagle hybrid zone
    • Backstöm N., Väli Ü. Sex - and species-biased gene flow in a spotted eagle hybrid zone. BMC Evol. Biol. 2011, 11:100-109.
    • (2011) BMC Evol. Biol. , vol.11 , pp. 100-109
    • Backstöm, N.1    Väli, Ü.2
  • 7
    • 33748917745 scopus 로고    scopus 로고
    • Genetic mapping in a natural population of collared flycatchers (Ficedula albicollis): conserved synteny but gene order rearrangements on the avian z chromosome
    • Backström N., Brandström M., Gustafsson L., Qvarnstöm A., Cheng H., Ellegren H. Genetic mapping in a natural population of collared flycatchers (Ficedula albicollis): conserved synteny but gene order rearrangements on the avian z chromosome. Genetics 2006, 174:377-386.
    • (2006) Genetics , vol.174 , pp. 377-386
    • Backström, N.1    Brandström, M.2    Gustafsson, L.3    Qvarnstöm, A.4    Cheng, H.5    Ellegren, H.6
  • 8
    • 38849083895 scopus 로고    scopus 로고
    • Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome
    • Backström N., Fagerberg S., Ellegren H. Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome. Mol. Ecol. 2008, 17:964-980.
    • (2008) Mol. Ecol. , vol.17 , pp. 964-980
    • Backström, N.1    Fagerberg, S.2    Ellegren, H.3
  • 9
    • 0036325282 scopus 로고    scopus 로고
    • Apparent hybrid prairie-chickens in a zone of geographic overlap
    • Bain M.R., Farley G.H. Apparent hybrid prairie-chickens in a zone of geographic overlap. Condor 2002, 104:683-687.
    • (2002) Condor , vol.104 , pp. 683-687
    • Bain, M.R.1    Farley, G.H.2
  • 11
    • 33645118576 scopus 로고    scopus 로고
    • Contrasting patterns of polymorphism and divergence on the Z chromosome and autosomes in two Ficedula flycatcher species
    • Borge T., Webster M.T., Andersson G., Sætre G.P. Contrasting patterns of polymorphism and divergence on the Z chromosome and autosomes in two Ficedula flycatcher species. Genetics 2005, 171:1861-1873.
    • (2005) Genetics , vol.171 , pp. 1861-1873
    • Borge, T.1    Webster, M.T.2    Andersson, G.3    Sætre, G.P.4
  • 12
    • 53849128215 scopus 로고    scopus 로고
    • Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data
    • Brumfield R.T., Liu L., Lum D.E., Edwards S.V. Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data. Syst. Biol. 2008, 57:719-731.
    • (2008) Syst. Biol. , vol.57 , pp. 719-731
    • Brumfield, R.T.1    Liu, L.2    Lum, D.E.3    Edwards, S.V.4
  • 13
    • 77953908260 scopus 로고    scopus 로고
    • Historical divergence and gene flow: coalescent analyses of mitochondrial, autosomal and sex-linked loci in Passerina buntings
    • Carling M.D., Lovette I.J., Brumfield R.T. Historical divergence and gene flow: coalescent analyses of mitochondrial, autosomal and sex-linked loci in Passerina buntings. Evolution 2010, 64:1762-1772.
    • (2010) Evolution , vol.64 , pp. 1762-1772
    • Carling, M.D.1    Lovette, I.J.2    Brumfield, R.T.3
  • 14
    • 0035038057 scopus 로고    scopus 로고
    • The effect of life-history and mode of inheritance on neutral genetic variability
    • Charlesworth B. The effect of life-history and mode of inheritance on neutral genetic variability. Genet. Res. 2001, 77:153-166.
    • (2001) Genet. Res. , vol.77 , pp. 153-166
    • Charlesworth, B.1
  • 15
    • 60349093708 scopus 로고    scopus 로고
    • Effective population size and patterns of molecular evolution and variation
    • Charlesworth B. Effective population size and patterns of molecular evolution and variation. Nat. Rev. Genet. 2009, 10:195-205.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 195-205
    • Charlesworth, B.1
  • 16
    • 0023501735 scopus 로고
    • The relative rates of evolution of sex chromosomes and autosomes
    • Charlesworth B., Coyne J.A., Barton N.H. The relative rates of evolution of sex chromosomes and autosomes. Am. Nat. 1987, 130:113-146.
    • (1987) Am. Nat. , vol.130 , pp. 113-146
    • Charlesworth, B.1    Coyne, J.A.2    Barton, N.H.3
  • 17
    • 0029909630 scopus 로고    scopus 로고
    • Effective sizes and dynamics of uniparentally and diparentally inherited genes
    • Chesser R.K., Baker R.J. Effective sizes and dynamics of uniparentally and diparentally inherited genes. Genetics 1996, 144:1225-1235.
    • (1996) Genetics , vol.144 , pp. 1225-1235
    • Chesser, R.K.1    Baker, R.J.2
  • 19
    • 84863426419 scopus 로고    scopus 로고
    • The genomic signature of sexual selection in the genetic diversity of the sex chromosomes and autosomes
    • Corl A., Ellegren H. The genomic signature of sexual selection in the genetic diversity of the sex chromosomes and autosomes. Evolution 2012, 66:2138-2149.
    • (2012) Evolution , vol.66 , pp. 2138-2149
    • Corl, A.1    Ellegren, H.2
  • 20
    • 84877928334 scopus 로고    scopus 로고
    • Sampling strategies for species trees: the effects on pylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal
    • Corl A., Ellegren H. Sampling strategies for species trees: the effects on pylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal. Mol. Phylogenet. Evol. 2013, 62:358-366.
    • (2013) Mol. Phylogenet. Evol. , vol.62 , pp. 358-366
    • Corl, A.1    Ellegren, H.2
  • 21
    • 0009832596 scopus 로고
    • Morphology and behavior of greater×lesser prairie chicken hybrids
    • Crawford J.A. Morphology and behavior of greater×lesser prairie chicken hybrids. Southwest Nat. 1978, 23:591-596.
    • (1978) Southwest Nat. , vol.23 , pp. 591-596
    • Crawford, J.A.1
  • 22
    • 47749139699 scopus 로고    scopus 로고
    • The hidden side of invasions: massive introgression by local genes
    • Currat M., Ruedi M., Petit R.J., Excoffier L. The hidden side of invasions: massive introgression by local genes. Evolution 2008, 62:1908-1920.
    • (2008) Evolution , vol.62 , pp. 1908-1920
    • Currat, M.1    Ruedi, M.2    Petit, R.J.3    Excoffier, L.4
  • 23
    • 0036038208 scopus 로고    scopus 로고
    • Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes
    • Dimcheff D.E., Drovetski S.V., Mindell D.P. Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes. Mol. Phylogenet. Evol. 2002, 24:203-215.
    • (2002) Mol. Phylogenet. Evol. , vol.24 , pp. 203-215
    • Dimcheff, D.E.1    Drovetski, S.V.2    Mindell, D.P.3
  • 24
    • 0036949068 scopus 로고    scopus 로고
    • Molecular phylogeny of grouse: individual and combined performance of w-linked, autosomal, and mitochondrial loci
    • Drovetski S.V. Molecular phylogeny of grouse: individual and combined performance of w-linked, autosomal, and mitochondrial loci. Syst. Biol. 2002, 51:930-945.
    • (2002) Syst. Biol. , vol.51 , pp. 930-945
    • Drovetski, S.V.1
  • 25
    • 0043235781 scopus 로고    scopus 로고
    • Plio-Pleistocene climatic oscillations, Holarctic biogeography and speciation in an avian subfamily
    • Drovetski S.V. Plio-Pleistocene climatic oscillations, Holarctic biogeography and speciation in an avian subfamily. J. Biogeogr. 2003, 30:1173-1181.
    • (2003) J. Biogeogr. , vol.30 , pp. 1173-1181
    • Drovetski, S.V.1
  • 26
    • 84864530626 scopus 로고    scopus 로고
    • Bayesian phylogenetics with BEAUti and the BEAST 1.7
    • Drummond A.J., Suchard M.A., Rambaut A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 2012, 29:1969-1973.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1969-1973
    • Drummond, A.J.1    Suchard, M.A.2    Rambaut, A.3
  • 27
    • 56549103832 scopus 로고    scopus 로고
    • Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow
    • Eckert A.J., Carstens B.C. Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow. Mol. Phylogenet. Evol. 2008, 49:832-842.
    • (2008) Mol. Phylogenet. Evol. , vol.49 , pp. 832-842
    • Eckert, A.J.1    Carstens, B.C.2
  • 29
    • 34547645438 scopus 로고    scopus 로고
    • Molecular evolutionary genomics of birds
    • Ellegren H. Molecular evolutionary genomics of birds. Cytogenet. Genome Res. 2007, 117:120-130.
    • (2007) Cytogenet. Genome Res. , vol.117 , pp. 120-130
    • Ellegren, H.1
  • 30
    • 58149234978 scopus 로고    scopus 로고
    • Genomic evidence for a large z-effect
    • Ellegren H. Genomic evidence for a large z-effect. Proc. R. Soc. Lond. B Biol. Sci. 2009, 276:361-366.
    • (2009) Proc. R. Soc. Lond. B Biol. Sci. , vol.276 , pp. 361-366
    • Ellegren, H.1
  • 31
    • 66449105907 scopus 로고    scopus 로고
    • The different levels of genetic diversity in sex chromosomes and autosomes
    • Ellegren H. The different levels of genetic diversity in sex chromosomes and autosomes. Trends Genet. 2009, 25:278-284.
    • (2009) Trends Genet. , vol.25 , pp. 278-284
    • Ellegren, H.1
  • 32
    • 0028112560 scopus 로고
    • Mitochondrial-DNA and nuclear-gene differentiation in North American prairie grouse (genus Tympanuchus)
    • Ellsworth D.J., Honeycutt R.L., Silvy N.J., Rittenhouse K.D., Smith M.H. Mitochondrial-DNA and nuclear-gene differentiation in North American prairie grouse (genus Tympanuchus). Auk 1994, 111:661-671.
    • (1994) Auk , vol.111 , pp. 661-671
    • Ellsworth, D.J.1    Honeycutt, R.L.2    Silvy, N.J.3    Rittenhouse, K.D.4    Smith, M.H.5
  • 33
    • 9644254102 scopus 로고
    • Two Irvingtonian (Medial Pleistocene) vertebrate faunas from north-central Kansas
    • Eshelman R., Hager M. Two Irvingtonian (Medial Pleistocene) vertebrate faunas from north-central Kansas. Contribut. Quater. Vertebrate Paleontol. 1984, 8:384-404.
    • (1984) Contribut. Quater. Vertebrate Paleontol. , vol.8 , pp. 384-404
    • Eshelman, R.1    Hager, M.2
  • 34
    • 0032966685 scopus 로고    scopus 로고
    • A simple and universal method for molecular sexing of non-ratite birds
    • Fridolfsson A.K., Ellegren H. A simple and universal method for molecular sexing of non-ratite birds. J. Avian Biol. 1999, 30:116-121.
    • (1999) J. Avian Biol. , vol.30 , pp. 116-121
    • Fridolfsson, A.K.1    Ellegren, H.2
  • 35
    • 0000457568 scopus 로고
    • Sexual selection for increased male courtship and acoustic signals and against large male size at sharp-tailed grouse leks
    • Gratson M.W. Sexual selection for increased male courtship and acoustic signals and against large male size at sharp-tailed grouse leks. Evolution 1993, 47:691-696.
    • (1993) Evolution , vol.47 , pp. 691-696
    • Gratson, M.W.1
  • 36
    • 0034508683 scopus 로고    scopus 로고
    • A classification of the grouse (Aves: Tetraoninae) based on mitochondrial DNA sequences
    • Gutiérrez R.J., Barrowclough G.F., Groth J.G. A classification of the grouse (Aves: Tetraoninae) based on mitochondrial DNA sequences. Wildlife Biol. 2000, 6:205-211.
    • (2000) Wildlife Biol. , vol.6 , pp. 205-211
    • Gutiérrez, R.J.1    Barrowclough, G.F.2    Groth, J.G.3
  • 37
    • 33845511859 scopus 로고    scopus 로고
    • Lesser prairie-chicken (Tympanuchus pallidicinctus)
    • In: Poole, A. (Ed.). Cornell Lab of Ornithology, Ithica, NY
    • Hagen, C.A., Giesen, K.M., 2005. Lesser prairie-chicken (Tympanuchus pallidicinctus). In: Poole, A. (Ed.) The Birds of North America Online. Cornell Lab of Ornithology, Ithica, NY http://bna.birds.cornell.Edu/bna/species/364.
    • (2005) The Birds of North America Online
    • Hagen, C.A.1    Giesen, K.M.2
  • 38
    • 2142755505 scopus 로고    scopus 로고
    • Guidelines for managing lesser prairie-chicken populations and their habitats
    • Hagen C.A., Jamison B.E., Giesen K.M., Riley T.Z. Guidelines for managing lesser prairie-chicken populations and their habitats. Wild. Soc. Bull. 2004, 32:69-82.
    • (2004) Wild. Soc. Bull. , vol.32 , pp. 69-82
    • Hagen, C.A.1    Jamison, B.E.2    Giesen, K.M.3    Riley, T.Z.4
  • 41
    • 77952294620 scopus 로고    scopus 로고
    • Isolation with migration models for more than two populations
    • Hey J. Isolation with migration models for more than two populations. Mol. Biol. Evol. 2010, 27:905-920. 10.1093/molbev/msp296.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 905-920
    • Hey, J.1
  • 42
    • 33847253975 scopus 로고    scopus 로고
    • Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
    • Hey J., Nielsen R. Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proc. Nat. Acad. Sci. USA 2007, 104:2785-2790.
    • (2007) Proc. Nat. Acad. Sci. USA , vol.104 , pp. 2785-2790
    • Hey, J.1    Nielsen, R.2
  • 43
    • 84903303945 scopus 로고    scopus 로고
    • The mitonuclear compatibility hypothesis of sexual selection
    • Hill, G.E., Johnson, J.D., 2013. The mitonuclear compatibility hypothesis of sexual selection. Proc. R. Soc. Lond. B. 280, 20131314. doi: doi:10.1098/rspb.2013.1314.
    • (2013) Proc. R. Soc. Lond. B , vol.280 , pp. 20131314
    • Hill, G.E.1    Johnson, J.D.2
  • 44
    • 0036695118 scopus 로고    scopus 로고
    • Mathematical consequences of the genealogical species concept
    • Hudson R.R., Coyne J.A. Mathematical consequences of the genealogical species concept. Evolution 2002, 56:1557-1565.
    • (2002) Evolution , vol.56 , pp. 1557-1565
    • Hudson, R.R.1    Coyne, J.A.2
  • 45
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson R.R., Kreitman M., Aguadé M. A test of neutral molecular evolution based on nucleotide data. Genetics 1987, 116:153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguadé, M.3
  • 46
    • 77958617568 scopus 로고    scopus 로고
    • Contrasting population genetic patterns within the white-throated sparrow genome (Zonotrichia albicollis)
    • Huynh L.Y., Maney D.L., Thomas J.W. Contrasting population genetic patterns within the white-throated sparrow genome (Zonotrichia albicollis). BMC Genet. 2010, 11:96.
    • (2010) BMC Genet. , vol.11 , pp. 96
    • Huynh, L.Y.1    Maney, D.L.2    Thomas, J.W.3
  • 47
    • 77953140263 scopus 로고    scopus 로고
    • Congruence between nuclear and mitochondrial DNA: combination of multiple nuclear introns resolves a well-supported phylogeny of New World orioles (Icterus)
    • Jacobsen F., Friedman N.R., Omland K.E. Congruence between nuclear and mitochondrial DNA: combination of multiple nuclear introns resolves a well-supported phylogeny of New World orioles (Icterus). Mol. Phylogenet. Evol. 2010, 56:419-427.
    • (2010) Mol. Phylogenet. Evol. , vol.56 , pp. 419-427
    • Jacobsen, F.1    Friedman, N.R.2    Omland, K.E.3
  • 48
    • 84917708482 scopus 로고    scopus 로고
    • Whole-genome analyses resolve early branches in the tree of life of modern birds
    • (+100 more authors). doi: .
    • Jarvis, E.D., Mirarab, S., Aberer, A.J., Bo, L., Houde, P., et al., (+100 more authors), 2014. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science 346, 1320-1331. doi: doi:10.1126/science.1253451.
    • (2014) Science , vol.346 , pp. 1320-1331
    • Jarvis, E.D.1    Mirarab, S.2    Aberer, A.J.3    Bo, L.4    Houde, P.5
  • 50
    • 0001401475 scopus 로고
    • Distributional changes and interaction between prairie chickens and sharp-tailed grouse in the midwest
    • Johnsgard P.A., Wood R.E. Distributional changes and interaction between prairie chickens and sharp-tailed grouse in the midwest. Wilson Bull. 1968, 80:173-188.
    • (1968) Wilson Bull. , vol.80 , pp. 173-188
    • Johnsgard, P.A.1    Wood, R.E.2
  • 51
    • 41149150720 scopus 로고    scopus 로고
    • Recent range expansion and divergence among North American prairie grouse
    • Johnson J.A. Recent range expansion and divergence among North American prairie grouse. J. Hered. 2008, 99:165-173.
    • (2008) J. Hered. , vol.99 , pp. 165-173
    • Johnson, J.A.1
  • 52
    • 0345530941 scopus 로고    scopus 로고
    • Contrasting patterns of mitochondrial and microsatellite population structure in fragmented populations of greater prairie-chicken
    • Johnson J.A., Toepfer J.E., Dunn P.O. Contrasting patterns of mitochondrial and microsatellite population structure in fragmented populations of greater prairie-chicken. Mol. Ecol. 2003, 12:3335-3347.
    • (2003) Mol. Ecol. , vol.12 , pp. 3335-3347
    • Johnson, J.A.1    Toepfer, J.E.2    Dunn, P.O.3
  • 53
    • 34250223108 scopus 로고    scopus 로고
    • Effects of recent population bottlenecks on reconstructing the demographic history of prairie-chickens
    • Johnson J.A., Dunn P.O., Bouzat J.L. Effects of recent population bottlenecks on reconstructing the demographic history of prairie-chickens. Mol. Ecol. 2007, 16:2203-2222.
    • (2007) Mol. Ecol. , vol.16 , pp. 2203-2222
    • Johnson, J.A.1    Dunn, P.O.2    Bouzat, J.L.3
  • 55
    • 58149151065 scopus 로고    scopus 로고
    • Accelerated genetic drift on chromosome X during human dispersal out of Africa
    • Keinan A., Mullikin J.C., Patterson N., Reich D. Accelerated genetic drift on chromosome X during human dispersal out of Africa. Nature Genet. 2009, 41:66-70.
    • (2009) Nature Genet. , vol.41 , pp. 66-70
    • Keinan, A.1    Mullikin, J.C.2    Patterson, N.3    Reich, D.4
  • 57
    • 0004077604 scopus 로고
    • Occurrence of a sage grouse/sharp-tailed grouse hybrid in North Dakota
    • Kohn S.C., Kobriger G.D. Occurrence of a sage grouse/sharp-tailed grouse hybrid in North Dakota. Prairie Natural. 1986, 18:33-36.
    • (1986) Prairie Natural. , vol.18 , pp. 33-36
    • Kohn, S.C.1    Kobriger, G.D.2
  • 58
    • 84904966117 scopus 로고    scopus 로고
    • Bears in a forest of gene trees: phylogenetic inference is complicated by incomplete lineage sorting and gene flow
    • Kutschera V.E., Bidon T., Hailer F., Rodi J.L., Fain S.R., Janke A. Bears in a forest of gene trees: phylogenetic inference is complicated by incomplete lineage sorting and gene flow. Mol. Biol. Evol. 2014, 10.1093/molbev/msu186.
    • (2014) Mol. Biol. Evol.
    • Kutschera, V.E.1    Bidon, T.2    Hailer, F.3    Rodi, J.L.4    Fain, S.R.5    Janke, A.6
  • 59
    • 84888140829 scopus 로고    scopus 로고
    • How low can you go? The effects of mutation rate on the accuracy of species-tree estimation
    • Lanier H.C., Huang H., Knowles L.L. How low can you go? The effects of mutation rate on the accuracy of species-tree estimation. Mol. Phylogenet. Evol. 2014, 70:112-119.
    • (2014) Mol. Phylogenet. Evol. , vol.70 , pp. 112-119
    • Lanier, H.C.1    Huang, H.2    Knowles, L.L.3
  • 60
    • 0036742524 scopus 로고    scopus 로고
    • Effective population size and population subdivision in demographically structured populations
    • Laporte V., Charlesworth B. Effective population size and population subdivision in demographically structured populations. Genetics 2002, 162:501-519.
    • (2002) Genetics , vol.162 , pp. 501-519
    • Laporte, V.1    Charlesworth, B.2
  • 62
    • 84887319003 scopus 로고    scopus 로고
    • The influence of gene flow on species tree estimation: a simulation study
    • Leaché A.D., Harris R.B., Rannala B., Yang Z. The influence of gene flow on species tree estimation: a simulation study. Syst. Biol. 2014, 63:17-30.
    • (2014) Syst. Biol. , vol.63 , pp. 17-30
    • Leaché, A.D.1    Harris, R.B.2    Rannala, B.3    Yang, Z.4
  • 64
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 65
    • 70349231534 scopus 로고    scopus 로고
    • Measuring the degree of starshape in genealogies - summary statistics and demographic inference
    • Lohse K., Kelleher J. Measuring the degree of starshape in genealogies - summary statistics and demographic inference. Genet. Res. 2009, 91:281-292.
    • (2009) Genet. Res. , vol.91 , pp. 281-292
    • Lohse, K.1    Kelleher, J.2
  • 66
    • 0034958145 scopus 로고    scopus 로고
    • Historical biogeography and a mitochondrial DNA phylogeny of grouse and ptarmigan
    • Lucchini V., Höglund J., Klaus S., Swenson J., Randi E. Historical biogeography and a mitochondrial DNA phylogeny of grouse and ptarmigan. Mol. Phylogenet. Evol. 2001, 20:149-162.
    • (2001) Mol. Phylogenet. Evol. , vol.20 , pp. 149-162
    • Lucchini, V.1    Höglund, J.2    Klaus, S.3    Swenson, J.4    Randi, E.5
  • 67
    • 34248520609 scopus 로고    scopus 로고
    • Prairie grouse Tympanuchus cupido x phasianellus, hybridization on Manitoulin Island, Ontario
    • Lumsden H.G. Prairie grouse Tympanuchus cupido x phasianellus, hybridization on Manitoulin Island, Ontario. Can. Field. Nat. 2005, 119:507-514.
    • (2005) Can. Field. Nat. , vol.119 , pp. 507-514
    • Lumsden, H.G.1
  • 68
    • 77249176571 scopus 로고    scopus 로고
    • Faster-Z evolution is predominantly due to genetic drift
    • Mank J.E., Nam K., Ellegren H. Faster-Z evolution is predominantly due to genetic drift. Mol. Biol. Evol. 2010, 27:661-670.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 661-670
    • Mank, J.E.1    Nam, K.2    Ellegren, H.3
  • 69
    • 84873860010 scopus 로고    scopus 로고
    • A phylogeny of birds based on over 1500 loci collected by target enrichment and high-throughput sequencing
    • McCormack J.E., Harvey M.G., Faircloth B.C., Crawford N.G., Glenn T.C., Brumfield R.T. A phylogeny of birds based on over 1500 loci collected by target enrichment and high-throughput sequencing. PLoS ONE 2013, 8:e5848.
    • (2013) PLoS ONE , vol.8 , pp. e5848
    • McCormack, J.E.1    Harvey, M.G.2    Faircloth, B.C.3    Crawford, N.G.4    Glenn, T.C.5    Brumfield, R.T.6
  • 70
    • 66749101639 scopus 로고    scopus 로고
    • The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes
    • Melo-Ferreira J., Alves P.C., Freitas H., Ferrand N., Boursot P. The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes. Mol. Ecol. 2009, 18:2643-2658.
    • (2009) Mol. Ecol. , vol.18 , pp. 2643-2658
    • Melo-Ferreira, J.1    Alves, P.C.2    Freitas, H.3    Ferrand, N.4    Boursot, P.5
  • 71
    • 0035823230 scopus 로고    scopus 로고
    • Disruptive sexual selection against hybrids contributes to speciation between Heliconius cydno and Heliconius melpomene
    • Naisbit R.E., Jiggins C.D., Mallet J. Disruptive sexual selection against hybrids contributes to speciation between Heliconius cydno and Heliconius melpomene. Proc. R. Soc. Lond. B Biol. Sci. 2001, 268:1849-1854.
    • (2001) Proc. R. Soc. Lond. B Biol. Sci. , vol.268 , pp. 1849-1854
    • Naisbit, R.E.1    Jiggins, C.D.2    Mallet, J.3
  • 72
    • 44949210431 scopus 로고    scopus 로고
    • Phenotypic correlates and survival consequences of male mating success in lek-mating greater prairie-chickens (Tympanuchus cupido)
    • Nooker J.K., Sandercock B.K. Phenotypic correlates and survival consequences of male mating success in lek-mating greater prairie-chickens (Tympanuchus cupido). Behav. Ecol. Sociobiol. 2008, 62:1377-1388.
    • (2008) Behav. Ecol. Sociobiol. , vol.62 , pp. 1377-1388
    • Nooker, J.K.1    Sandercock, B.K.2
  • 73
    • 84883552308 scopus 로고    scopus 로고
    • Genome evolution and speciation: toward quantitative descriptions of pattern and process
    • Nosil P., Feder J.L. Genome evolution and speciation: toward quantitative descriptions of pattern and process. Evolution 2013, 67:2461-2467.
    • (2013) Evolution , vol.67 , pp. 2461-2467
    • Nosil, P.1    Feder, J.L.2
  • 75
    • 84866250131 scopus 로고    scopus 로고
    • Rapid evolution in lekking grouse: implications for taxonomic definitions
    • Oyler-McCance S.J., St.John J., Quinn T.W. Rapid evolution in lekking grouse: implications for taxonomic definitions. Ornithological Monographs 2010, 67:114-122.
    • (2010) Ornithological Monographs , vol.67 , pp. 114-122
    • Oyler-McCance, S.J.1    St.John, J.2    Quinn, T.W.3
  • 76
    • 67649400420 scopus 로고    scopus 로고
    • Gene flow and species delimitation
    • Petit R.J., Excoffier C. Gene flow and species delimitation. Trends Ecol. Evol. 2009, 24:386-393.
    • (2009) Trends Ecol. Evol. , vol.24 , pp. 386-393
    • Petit, R.J.1    Excoffier, C.2
  • 77
    • 0034031130 scopus 로고    scopus 로고
    • Matrilineal genetic structure and female-mediated gene flow in red grouse (Lagopus lagopus scoticus): an analysis using mitochondrial DNA
    • Piertney S.B., Maccoll A.D.C., Bacon P.J., Racey P.A., Lambin X., Dallas J.F. Matrilineal genetic structure and female-mediated gene flow in red grouse (Lagopus lagopus scoticus): an analysis using mitochondrial DNA. Evolution 2000, 54:279-289.
    • (2000) Evolution , vol.54 , pp. 279-289
    • Piertney, S.B.1    Maccoll, A.D.C.2    Bacon, P.J.3    Racey, P.A.4    Lambin, X.5    Dallas, J.F.6
  • 78
    • 36549065630 scopus 로고    scopus 로고
    • Population size changes reshape genomic patterns of diversity
    • Pool J.E., Nielsen R. Population size changes reshape genomic patterns of diversity. Evolution 2007, 61:3001-3006.
    • (2007) Evolution , vol.61 , pp. 3001-3006
    • Pool, J.E.1    Nielsen, R.2
  • 79
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 81
    • 57749192046 scopus 로고    scopus 로고
    • Speciation through evolution of sex-linked genes
    • Qvarnström A., Bailey R.I. Speciation through evolution of sex-linked genes. Heredity 2009, 102:4-15.
    • (2009) Heredity , vol.102 , pp. 4-15
    • Qvarnström, A.1    Bailey, R.I.2
  • 82
    • 84920914780 scopus 로고    scopus 로고
    • Tracer v1.5, Available from
    • Rambaut, A., Drummond, A.J., 2009. Tracer v1.5, Available from http://tree.bio.ed.ac.uk/software/tracer/.
    • (2009)
    • Rambaut, A.1    Drummond, A.J.2
  • 83
    • 84920914779 scopus 로고    scopus 로고
    • LogCombiner v1.7.4. Available at:
    • Rambaut, A., Drummond, A.J., 2012a. LogCombiner v1.7.4. Available at: http://beast.bio.ed.ac.uk/.
    • (2012)
    • Rambaut, A.1    Drummond, A.J.2
  • 84
    • 84920914778 scopus 로고    scopus 로고
    • TreeAnnotator v1.7.4. Available at:
    • Rambaut, A., Drummond, A.J., 2012b. TreeAnnotator v1.7.4. Available at: http://beast.bio.ed.ac.uk/.
    • (2012)
    • Rambaut, A.1    Drummond, A.J.2
  • 85
    • 81855228978 scopus 로고    scopus 로고
    • Genetic introgression: an integral but neglected component of speciation in birds
    • Rheindt F.E., Edwards S.V. Genetic introgression: an integral but neglected component of speciation in birds. Auk 2011, 128:620-632.
    • (2011) Auk , vol.128 , pp. 620-632
    • Rheindt, F.E.1    Edwards, S.V.2
  • 86
    • 84880326093 scopus 로고    scopus 로고
    • Diversification under sexual selection: the relative roles of mate preference strength and the degree of divergence in mate preferences
    • Rodríguez R.L., Boughman J.W., Gray D.A., Hebets E.A., Höbel G., Symes L.B. Diversification under sexual selection: the relative roles of mate preference strength and the degree of divergence in mate preferences. Ecol. Lett. 2013, 16:964-974.
    • (2013) Ecol. Lett. , vol.16 , pp. 964-974
    • Rodríguez, R.L.1    Boughman, J.W.2    Gray, D.A.3    Hebets, E.A.4    Höbel, G.5    Symes, L.B.6
  • 88
    • 0042697667 scopus 로고    scopus 로고
    • The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model
    • Rosenberg N.A. The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model. Evolution 2003, 57:1465-1477.
    • (2003) Evolution , vol.57 , pp. 1465-1477
    • Rosenberg, N.A.1
  • 91
    • 84885939276 scopus 로고    scopus 로고
    • Contributions of natural and sexual selection to the evolution of premating reproductive isolation: a research agenda
    • Safran R.J., Scordato E.S.C., Symes L.B., Rodríguez R.L., Mendelson T.C. Contributions of natural and sexual selection to the evolution of premating reproductive isolation: a research agenda. Trends Ecol. Evol. 2013, 28:643-650.
    • (2013) Trends Ecol. Evol. , vol.28 , pp. 643-650
    • Safran, R.J.1    Scordato, E.S.C.2    Symes, L.B.3    Rodríguez, R.L.4    Mendelson, T.C.5
  • 92
    • 0001846550 scopus 로고    scopus 로고
    • Greater Sage-Grouse (Centrocercus urophasianus)
    • Poole, A. (Ed.), Cornell Lab of Ornithology, Ithaca.
    • Schroeder, M.A., Young, J.R., Braun, C.E., 1999. Greater Sage-Grouse (Centrocercus urophasianus). In: Poole, A. (Ed.), The Birds of North America Online, Cornell Lab of Ornithology, Ithaca.
    • (1999) The Birds of North America Online
    • Schroeder, M.A.1    Young, J.R.2    Braun, C.E.3
  • 94
    • 0842301555 scopus 로고    scopus 로고
    • The role of reinforcement in speciation: theory and data
    • Servedio M.R., Noor M.A.F. The role of reinforcement in speciation: theory and data. Annu. Rev. Ecol. Evol. Syst. 2003, 34:339-364.
    • (2003) Annu. Rev. Ecol. Evol. Syst. , vol.34 , pp. 339-364
    • Servedio, M.R.1    Noor, M.A.F.2
  • 95
    • 2142762696 scopus 로고    scopus 로고
    • The cause of the decline of pinnated grouse: the Texas example
    • Silvy N.J., Peterson M.J., Lopez R.R. The cause of the decline of pinnated grouse: the Texas example. Wild. Soc. Bull. 2004, 32:16-21.
    • (2004) Wild. Soc. Bull. , vol.32 , pp. 16-21
    • Silvy, N.J.1    Peterson, M.J.2    Lopez, R.R.3
  • 97
    • 34249951877 scopus 로고    scopus 로고
    • Rapid courtship evolution in grouse (Tentraonidae): contrasting patterns of acceleration between the Eurasian and North American polygynous clades
    • Spaulding A.W. Rapid courtship evolution in grouse (Tentraonidae): contrasting patterns of acceleration between the Eurasian and North American polygynous clades. Proc. R. Soc. Lond. B Biol. Sci. 2007, 274:1079-1086.
    • (2007) Proc. R. Soc. Lond. B Biol. Sci. , vol.274 , pp. 1079-1086
    • Spaulding, A.W.1
  • 98
    • 33745910888 scopus 로고    scopus 로고
    • Recency, range expansion, and unsorted lineages: implications for interpreting neutral genetic variation in the Sharp-tailed Grouse (Tympanuchus phasianellus)
    • Spaulding A.W., Mock K.E., Shroeders A., Warheit K.I. Recency, range expansion, and unsorted lineages: implications for interpreting neutral genetic variation in the Sharp-tailed Grouse (Tympanuchus phasianellus). Mol. Ecol. 2006, 15:2317-2332.
    • (2006) Mol. Ecol. , vol.15 , pp. 2317-2332
    • Spaulding, A.W.1    Mock, K.E.2    Shroeders, A.3    Warheit, K.I.4
  • 99
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M., Smith N.J., Donnelly P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 2001, 68:978-989.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 100
    • 75149153490 scopus 로고    scopus 로고
    • Female heterogamety and speciation: reduced introgression of the Z chromosome between the two species of nightingales
    • Storchová R., Reif J., Nachman M.W. Female heterogamety and speciation: reduced introgression of the Z chromosome between the two species of nightingales. Evolution 2010, 64:456-471.
    • (2010) Evolution , vol.64 , pp. 456-471
    • Storchová, R.1    Reif, J.2    Nachman, M.W.3
  • 101
    • 2942538192 scopus 로고    scopus 로고
    • Reduced variation on the chicken z chromosome
    • Sundstöm H., Webster M.T., Ellegren H. Reduced variation on the chicken z chromosome. Genetics 2004, 167:377-385.
    • (2004) Genetics , vol.167 , pp. 377-385
    • Sundstöm, H.1    Webster, M.T.2    Ellegren, H.3
  • 103
    • 84864413626 scopus 로고    scopus 로고
    • The biogeography of mitochondrial and nuclear discordance in animals
    • Toews D.L., Brelsford A. The biogeography of mitochondrial and nuclear discordance in animals. Mol. Ecol. 2012, 21:3907-3930.
    • (2012) Mol. Ecol. , vol.21 , pp. 3907-3930
    • Toews, D.L.1    Brelsford, A.2
  • 104
    • 84893807839 scopus 로고    scopus 로고
    • Evidence for mito-nuclear and sex-linked reproductive barriers between the hybrid Italian sparrow and its parent species
    • Trier C.N., Harmansen J.S., Sætre G.-P., Bailey R.I. Evidence for mito-nuclear and sex-linked reproductive barriers between the hybrid Italian sparrow and its parent species. PLoS Genet. 2014, 10(1):e1004075. 10.1371/journal.pgen.1004075.
    • (2014) PLoS Genet. , vol.10 , Issue.1 , pp. e1004075
    • Trier, C.N.1    Harmansen, J.S.2    Sætre, G.-P.3    Bailey, R.I.4
  • 105
    • 84899476884 scopus 로고    scopus 로고
    • Whole gneome sequencing of the black grouse (Tetrao tetrix): reference guided assembly suggests faster-Z and MHC evolution
    • Wang B., Ekblom R., Bunikis I., Siitari H., Hoglund J. Whole gneome sequencing of the black grouse (Tetrao tetrix): reference guided assembly suggests faster-Z and MHC evolution. BMC Genom. 2014, 15:180.
    • (2014) BMC Genom. , vol.15 , pp. 180
    • Wang, B.1    Ekblom, R.2    Bunikis, I.3    Siitari, H.4    Hoglund, J.5
  • 106
    • 34547863856 scopus 로고    scopus 로고
    • Recombination-filtered genomic datasets by information maximization
    • Woerner A.E., Cox M.P., Hammer M.F. Recombination-filtered genomic datasets by information maximization. Bioinformatics 2007, 23:1851-1853.
    • (2007) Bioinformatics , vol.23 , pp. 1851-1853
    • Woerner, A.E.1    Cox, M.P.2    Hammer, M.F.3
  • 107
    • 42449136665 scopus 로고    scopus 로고
    • Mitochondrial DNA under siege in avian phylogeography
    • Zink R.M., Barrowclough G.F. Mitochondrial DNA under siege in avian phylogeography. Mol. Ecol. 2008, 17:2107-2121.
    • (2008) Mol. Ecol. , vol.17 , pp. 2107-2121
    • Zink, R.M.1    Barrowclough, G.F.2


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