메뉴 건너뛰기




Volumn 16, Issue 11, 2007, Pages 2203-2222

Effects of recent population bottlenecks on reconstructing the demographic history of prairie-chickens

Author keywords

Bottleneck; Coalescent; Incomplete lineage sorting; MDIV; Mismatch distribution; Nested clade analysis; Tympanuchus

Indexed keywords

MITOCHONDRIAL DNA;

EID: 34250223108     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2007.03285.x     Document Type: Article
Times cited : (64)

References (95)
  • 3
    • 0038580625 scopus 로고    scopus 로고
    • Loss of genetic variation in greater prairie chickens following a population bottleneck in Wisconsin, U.S.A
    • Bellinger MR, Johnson JA, Toepfer JE, Dunn PO (2003) Loss of genetic variation in greater prairie chickens following a population bottleneck in Wisconsin, U.S.A. Conservation Biology, 17, 717 724.
    • (2003) Conservation Biology , vol.17 , pp. 717-724
    • Bellinger, M.R.1    Johnson, J.A.2    Toepfer, J.E.3    Dunn, P.O.4
  • 4
    • 0035089776 scopus 로고    scopus 로고
    • The evolutionary history of brown trout (Salmo trutta L.) inferred from phylogeographic, nested clade, and mismatch analyses of mitochondrial DNA variation
    • Bernatchez L (2001) The evolutionary history of brown trout (Salmo trutta L.) inferred from phylogeographic, nested clade, and mismatch analyses of mitochondrial DNA variation. Evolution, 55, 351 379.
    • (2001) Evolution , vol.55 , pp. 351-379
    • Bernatchez, L.1
  • 6
    • 0031863801 scopus 로고    scopus 로고
    • The ghost of genetic diversity past: Historical DNA analysis of the greater prairie chicken
    • Bouzat JL, Lewin HA, Paige KN (1998b) The ghost of genetic diversity past: historical DNA analysis of the greater prairie chicken. American Naturalist, 152, 1 6.
    • (1998) American Naturalist , vol.152 , pp. 1-6
    • Bouzat, J.L.1    Lewin, H.A.2    Paige, K.N.3
  • 7
    • 26944502428 scopus 로고    scopus 로고
    • The influence of Pleistocene glacial refugia on tawny owl genetic diversity and phylogeography in western Europe
    • Brito PH (2005) The influence of Pleistocene glacial refugia on tawny owl genetic diversity and phylogeography in western Europe. Molecular Ecology, 14, 3077 3094.
    • (2005) Molecular Ecology , vol.14 , pp. 3077-3094
    • Brito, P.H.1
  • 8
    • 0037699012 scopus 로고    scopus 로고
    • Ancestral polymorphisms in genetic markers obscure detection of evolutionarily distinct populations in the endangered Florida grasshopper sparrow (Ammodramus savannarum floridanus)
    • Bulgin NL, Gibbs HL, Vickery P, Baker AJ (2003) Ancestral polymorphisms in genetic markers obscure detection of evolutionarily distinct populations in the endangered Florida grasshopper sparrow (Ammodramus savannarum floridanus). Molecular Ecology, 12, 831 844.
    • (2003) Molecular Ecology , vol.12 , pp. 831-844
    • Bulgin, N.L.1    Gibbs, H.L.2    Vickery, P.3    Baker, A.J.4
  • 10
    • 0028456728 scopus 로고
    • Root probabilities for intraspecific gene trees under neutral coalescent theory
    • Castelloe J, Templeton AR (1994) Root probabilities for intraspecific gene trees under neutral coalescent theory. Molecular Phylogenetics and Evolution, 3, 102 113.
    • (1994) Molecular Phylogenetics and Evolution , vol.3 , pp. 102-113
    • Castelloe, J.1    Templeton, A.R.2
  • 11
    • 33646483919 scopus 로고    scopus 로고
    • Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA
    • Chan YL, Anderson CNK, Hadly EA (2006) Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA. Public Library of Science Genetics, 2, e59.
    • (2006) Public Library of Science Genetics , vol.2
    • Chan, Y.L.1    Anderson, C.N.K.2    Hadly, E.A.3
  • 12
    • 0033771358 scopus 로고    scopus 로고
    • Tcs: A computer program to estimate gene genealogies
    • Clement M, Posada D, Crandall KA (2000) tcs: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1659.
    • (2000) Molecular Ecology , vol.9 , pp. 1657-1659
    • Clement, M.1    Posada, D.2    Crandall, K.A.3
  • 13
    • 0030032992 scopus 로고    scopus 로고
    • Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences
    • Crandall KA (1996) Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences. Molecular Biology and Evolution, 13, 115 131.
    • (1996) Molecular Biology and Evolution , vol.13 , pp. 115-131
    • Crandall, K.A.1
  • 14
    • 0027285731 scopus 로고
    • Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny construction
    • Crandall KA, Templeton AR (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny construction. Genetics, 134, 959 969.
    • (1993) Genetics , vol.134 , pp. 959-969
    • Crandall, K.A.1    Templeton, A.R.2
  • 17
    • 4344568438 scopus 로고    scopus 로고
    • The expansion of conservation genetics
    • DeSalle R, Amato G (2004) The expansion of conservation genetics. Nature Reviews Genetics, 5, 702 712.
    • (2004) Nature Reviews Genetics , vol.5 , pp. 702-712
    • Desalle, R.1    Amato, G.2
  • 18
    • 0036038208 scopus 로고    scopus 로고
    • Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes
    • Dimcheff DE, Drovetski SV, Mindell DP (2002) Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes. Molecular Phylogenetics and Evolution, 24, 203 215.
    • (2002) Molecular Phylogenetics and Evolution , vol.24 , pp. 203-215
    • Dimcheff, D.E.1    Drovetski, S.V.2    Mindell, D.P.3
  • 19
    • 0036949068 scopus 로고    scopus 로고
    • Molecular phylogeny of grouse: Individual and combined performance of W-linked, autosomal, and mitochondrial loci
    • Drovetski SV (2002) Molecular phylogeny of grouse: individual and combined performance of W-linked, autosomal, and mitochondrial loci. Systematic Biology, 51, 930 945.
    • (2002) Systematic Biology , vol.51 , pp. 930-945
    • Drovetski, S.V.1
  • 20
    • 0043235781 scopus 로고    scopus 로고
    • Plio-Pleistocene climatic oscillations, Holarctic biogeography and speciation in an avian subfamily
    • Drovetski SV (2003) Plio-Pleistocene climatic oscillations, Holarctic biogeography and speciation in an avian subfamily. Journal of Biogeography, 30, 1173 1181.
    • (2003) Journal of Biogeography , vol.30 , pp. 1173-1181
    • Drovetski, S.V.1
  • 21
    • 0034496840 scopus 로고    scopus 로고
    • Perspective: Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies
    • Edwards SV, Beerli P (2000) Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution, 54, 1839 1854.
    • (2000) Evolution , vol.54 , pp. 1839-1854
    • Edwards, S.V.1    Beerli, P.2
  • 23
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin, version 3.0: An integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S (2005) arlequin, version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 24
    • 0028069723 scopus 로고
    • Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: Molecular variance parsimony
    • Excoffier L, Smouse PE (1994) Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony. Genetics, 136, 343 359.
    • (1994) Genetics , vol.136 , pp. 343-359
    • Excoffier, L.1    Smouse, P.E.2
  • 25
    • 0032970601 scopus 로고    scopus 로고
    • A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation
    • Fay JC, Wu CI (1999) A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation. Molecular Biology and Evolution, 16, 1003 1005.
    • (1999) Molecular Biology and Evolution , vol.16 , pp. 1003-1005
    • Fay, J.C.1    Wu, C.I.2
  • 26
    • 0034614340 scopus 로고    scopus 로고
    • A simple method of removing the effect of a bottleneck and unequal population sizes on pairwise genetic distances
    • Gaggiotti OE, Excoffier L (2000) A simple method of removing the effect of a bottleneck and unequal population sizes on pairwise genetic distances. Proceedings of the Royal Society of London Series B, 267, 81 87.
    • (2000) Proceedings of the Royal Society of London Series B , vol.267 , pp. 81-87
    • Gaggiotti, O.E.1    Excoffier, L.2
  • 27
    • 0032826877 scopus 로고    scopus 로고
    • Effects of a population bottleneck on whooping crane mitochondrial DNA variation
    • Glenn TC, Stephan W, Braun MJ (1999) Effects of a population bottleneck on whooping crane mitochondrial DNA variation. Conservation Biology, 13, 1097 1107.
    • (1999) Conservation Biology , vol.13 , pp. 1097-1107
    • Glenn, T.C.1    Stephan, W.2    Braun, M.J.3
  • 28
    • 0036006033 scopus 로고    scopus 로고
    • Time to the most recent common ancestor and divergence times of populations of common chaffinches (Fringilla coelebs) in Europe and North Africa: Insights into Pleistocene refugia and current levels of migration
    • Griswold CK, Baker AJ (2002) Time to the most recent common ancestor and divergence times of populations of common chaffinches (Fringilla coelebs) in Europe and North Africa: insights into Pleistocene refugia and current levels of migration. Evolution, 56, 143 153.
    • (2002) Evolution , vol.56 , pp. 143-153
    • Griswold, C.K.1    Baker, A.J.2
  • 29
    • 0028484009 scopus 로고
    • Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution
    • Harpending HC (1994) Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology, 66, 591 600.
    • (1994) Human Biology , vol.66 , pp. 591-600
    • Harpending, H.C.1
  • 32
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution, 21, 160 174.
    • (1985) Journal of Molecular Evolution , vol.21 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 33
    • 3843097266 scopus 로고    scopus 로고
    • Recent developments in conservation genetics
    • Hedrick PW (2004a) Recent developments in conservation genetics. Forest Ecology and Management, 197, 3 19.
    • (2004) Forest Ecology and Management , vol.197 , pp. 3-19
    • Hedrick, P.W.1
  • 34
    • 34250185175 scopus 로고    scopus 로고
    • Conservation biology: The impact of population biology and a current perspective
    • In: (eds. Singh, R.S., Uyenoyama, M.K.), pp. Cambridge University Press, UK.
    • Hedrick PW (2004b) Conservation biology: the impact of population biology and a current perspective. In : The Evolution of Population Biology (eds Singh RS, Uyenoyama MK), pp. 347 365. Cambridge University Press, UK.
    • (2004) The Evolution of Population Biology , pp. 347-365
    • Hedrick, P.W.1
  • 36
    • 22744459171 scopus 로고    scopus 로고
    • On the number of New World founders: A population genetic portrait of the peopling of the Americas
    • Hey J (2005) On the number of New World founders: a population genetic portrait of the peopling of the Americas. Public Library of Science Biology, 3, e193.
    • (2005) Public Library of Science Biology , vol.3
    • Hey, J.1
  • 37
    • 0037803577 scopus 로고    scopus 로고
    • The study of structured populations - New hope for a difficult and divided science
    • Hey J, Machado CA (2003) The study of structured populations - new hope for a difficult and divided science. Nature Reviews Genetics, 4, 535 543.
    • (2003) Nature Reviews Genetics , vol.4 , pp. 535-543
    • Hey, J.1    MacHado, C.A.2
  • 38
    • 3142714474 scopus 로고    scopus 로고
    • Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
    • Hey J, Nielsen R (2004) Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics, 167, 747 760.
    • (2004) Genetics , vol.167 , pp. 747-760
    • Hey, J.1    Nielsen, R.2
  • 40
    • 0036695118 scopus 로고    scopus 로고
    • Mathematical consequences of the genealogical species concept
    • Hudson RR, Coyne JA (2002) Mathematical consequences of the genealogical species concept. Evolution, 56, 1557 1565.
    • (2002) Evolution , vol.56 , pp. 1557-1565
    • Hudson, R.R.1    Coyne, J.A.2
  • 41
    • 0037286419 scopus 로고    scopus 로고
    • Stochasticity overrules the 'three-times' rule: Genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial data
    • Hudson RR, Turelli M (2003) Stochasticity overrules the 'three-times' rule: genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial data. Evolution, 57, 182 190.
    • (2003) Evolution , vol.57 , pp. 182-190
    • Hudson, R.R.1    Turelli, M.2
  • 43
    • 4344571423 scopus 로고    scopus 로고
    • Temporal changes in allele frequencies and low effective population size in greater prairie-chickens
    • Johnson JA, Bellinger MR, Toepfer JE, Dunn PO (2004) Temporal changes in allele frequencies and low effective population size in greater prairie-chickens. Molecular Ecology, 13, 2617 2630.
    • (2004) Molecular Ecology , vol.13 , pp. 2617-2630
    • Johnson, J.A.1    Bellinger, M.R.2    Toepfer, J.E.3    Dunn, P.O.4
  • 44
    • 33644554470 scopus 로고    scopus 로고
    • Low genetic variation in the heath hen prior to extinction and implications for the conservation of prairie-chicken populations
    • Johnson JA, Dunn PO (2006) Low genetic variation in the heath hen prior to extinction and implications for the conservation of prairie-chicken populations. Conservation Genetics, 7, 37 48.
    • (2006) Conservation Genetics , vol.7 , pp. 37-48
    • Johnson, J.A.1    Dunn, P.O.2
  • 45
    • 0345530941 scopus 로고    scopus 로고
    • Contrasting patterns of mitochondrial and microsatellite population structure in fragmented populations of greater prairie-chickens
    • Johnson JA, Toepfer JE, Dunn PO (2003) Contrasting patterns of mitochondrial and microsatellite population structure in fragmented populations of greater prairie-chickens. Molecular Ecology, 12, 3335 3348.
    • (2003) Molecular Ecology , vol.12 , pp. 3335-3348
    • Johnson, J.A.1    Toepfer, J.E.2    Dunn, P.O.3
  • 46
    • 0842287651 scopus 로고    scopus 로고
    • The burgeoning field of statistical phylogeography
    • Knowles LL (2004) The burgeoning field of statistical phylogeography. Journal of Evolutionary Biology, 17, 1 10.
    • (2004) Journal of Evolutionary Biology , vol.17 , pp. 1-10
    • Knowles, L.L.1
  • 48
    • 0029908281 scopus 로고    scopus 로고
    • Genetic patterns suggest exponential population growth in a declining species
    • Lavery S, Moritz C, Fielder DR (1996) Genetic patterns suggest exponential population growth in a declining species. Molecular Biology and Evolution, 13, 1106 1113.
    • (1996) Molecular Biology and Evolution , vol.13 , pp. 1106-1113
    • Lavery, S.1    Moritz, C.2    Fielder, D.R.3
  • 50
    • 13844320121 scopus 로고    scopus 로고
    • Assignment methods: Matching biological questions with appropriate techniques
    • Manel S, Gaggiotti OE, Waples RS (2005) Assignment methods: matching biological questions with appropriate techniques. Trends in Ecology and Evolution, 20, 136 142.
    • (2005) Trends in Ecology and Evolution , vol.20 , pp. 136-142
    • Manel, S.1    Gaggiotti, O.E.2    Waples, R.S.3
  • 51
    • 0038460135 scopus 로고    scopus 로고
    • Population genetic structure of the toad Bufo woodhousii: An empirical assessment of the effects of haplotype extinction on nested cladistic analysis
    • Masta SE, Laurent NM, Routman EJ (2003) Population genetic structure of the toad Bufo woodhousii: an empirical assessment of the effects of haplotype extinction on nested cladistic analysis. Molecular Ecology, 12, 1541 1554.
    • (2003) Molecular Ecology , vol.12 , pp. 1541-1554
    • Masta, S.E.1    Laurent, N.M.2    Routman, E.J.3
  • 52
    • 0037390005 scopus 로고    scopus 로고
    • The history of effective population size and genetic diversity in the Yellowstone grizzly (Ursus arctos): Implications for conservation
    • Miller CR, Waits LP (2003) The history of effective population size and genetic diversity in the Yellowstone grizzly (Ursus arctos): implications for conservation. Proceedings of the National Academy of Sciences, USA, 100, 4334 4339.
    • (2003) Proceedings of the National Academy of Sciences, USA , vol.100 , pp. 4334-4339
    • Miller, C.R.1    Waits, L.P.2
  • 53
    • 0034809334 scopus 로고    scopus 로고
    • Statistical tests of selective neutrality in the age of genomics
    • Nielsen R (2001) Statistical tests of selective neutrality in the age of genomics. Heredity, 86, 641 647.
    • (2001) Heredity , vol.86 , pp. 641-647
    • Nielsen, R.1
  • 54
    • 0034967295 scopus 로고    scopus 로고
    • Distinguishing migration from isolation: A Markov chain Monte Carlo approach
    • Nielsen R, Wakeley J (2001) Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics, 158, 885 896.
    • (2001) Genetics , vol.158 , pp. 885-896
    • Nielsen, R.1    Wakeley, J.2
  • 55
    • 33644779643 scopus 로고    scopus 로고
    • Genetic signatures of intermediate divergence: Population history of Old and New World Holarctic ravens (Corvus corax)
    • Omland KE, Baker JM, Peters JL (2006) Genetic signatures of intermediate divergence: population history of Old and New World Holarctic ravens (Corvus corax). Molecular Ecology, 15, 795 808.
    • (2006) Molecular Ecology , vol.15 , pp. 795-808
    • Omland, K.E.1    Baker, J.M.2    Peters, J.L.3
  • 56
    • 3042701945 scopus 로고    scopus 로고
    • Genetic evaluation of a proposed introduction: The case of the greater prairie chicken and the extinct heath hen
    • Palkovacs EP, Oppenheimer AJ, Gladyshev E et al. (2004) Genetic evaluation of a proposed introduction: the case of the greater prairie chicken and the extinct heath hen. Molecular Ecology, 13, 1759 1769.
    • (2004) Molecular Ecology , vol.13 , pp. 1759-1769
    • Palkovacs, E.P.1    Oppenheimer, A.J.2    Gladyshev, E.3
  • 57
    • 0038650624 scopus 로고    scopus 로고
    • Coalescence in a metapopulation with recurrent local extinction and recolonization
    • Pannell JR (2003) Coalescence in a metapopulation with recurrent local extinction and recolonization. Evolution, 57, 949 961.
    • (2003) Evolution , vol.57 , pp. 949-961
    • Pannell, J.R.1
  • 58
    • 0036010854 scopus 로고    scopus 로고
    • Using nested clade analysis to assess the history of colonization and the persistence of populations of an Iberian lizard
    • Paulo OS, Jordan WC, Bruford MW, Nichols RA (2002) Using nested clade analysis to assess the history of colonization and the persistence of populations of an Iberian lizard. Molecular Ecology, 11, 809 820.
    • (2002) Molecular Ecology , vol.11 , pp. 809-820
    • Paulo, O.S.1    Jordan, W.C.2    Bruford, M.W.3    Nichols, R.A.4
  • 59
    • 1642410112 scopus 로고    scopus 로고
    • Beyond FST: Analysis of population genetic data for conservation
    • Pearse DE, Crandall KA (2004) Beyond FST: analysis of population genetic data for conservation. Conservation Genetics, 5, 585 602.
    • (2004) Conservation Genetics , vol.5 , pp. 585-602
    • Pearse, D.E.1    Crandall, K.A.2
  • 60
    • 33644786340 scopus 로고    scopus 로고
    • Late Pleistocene divergence between eastern and western populations of wood ducks (Aix sponsa) inferred by the 'isolation with migration' coalescent method
    • Peters JL, Gretes W, Omland KE (2005) Late Pleistocene divergence between eastern and western populations of wood ducks (Aix sponsa) inferred by the 'isolation with migration' coalescent method. Molecular Ecology, 14, 3407 3418.
    • (2005) Molecular Ecology , vol.14 , pp. 3407-3418
    • Peters, J.L.1    Gretes, W.2    Omland, K.E.3
  • 62
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 63
    • 0035139147 scopus 로고    scopus 로고
    • Intraspecific gene genealogies: Trees grafting into networks
    • Posada D, Crandall KA (2001) Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology & Evolution, 16, 37 45.
    • (2001) Trends in Ecology & Evolution , vol.16 , pp. 37-45
    • Posada, D.1    Crandall, K.A.2
  • 64
    • 0034100234 scopus 로고    scopus 로고
    • Geodis: A program for the cladistic nested analysis of the geographical distribution of genetic haplotypes
    • Posada D, Crandall KA, Templeton AR (2000) geodis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487 488.
    • (2000) Molecular Ecology , vol.9 , pp. 487-488
    • Posada, D.1    Crandall, K.A.2    Templeton, A.R.3
  • 65
    • 0026906691 scopus 로고
    • The genetic legacy of Mother Goose; Phylogeographic patterns of lesser snow goose Chen caerulescens caerulescens maternal lineages
    • Quinn TW (1992) The genetic legacy of Mother Goose; phylogeographic patterns of lesser snow goose Chen caerulescens caerulescens maternal lineages. Molecular Ecology, 1, 105 117.
    • (1992) Molecular Ecology , vol.1 , pp. 105-117
    • Quinn, T.W.1
  • 66
    • 0027361711 scopus 로고
    • Sequence evolution in and around the control region in birds
    • Quinn TW, Wilson AC (1993) Sequence evolution in and around the control region in birds. Journal of Molecular Evolution, 37, 417 425.
    • (1993) Journal of Molecular Evolution , vol.37 , pp. 417-425
    • Quinn, T.W.1    Wilson, A.C.2
  • 67
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552 569.
    • (1992) Molecular Biology and Evolution , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 68
    • 0042697667 scopus 로고    scopus 로고
    • The shapes of neutral gene genealogies in two species: Probabilities of monophyly, paraphyly, and polyphyly in a coalescent model
    • Rosenberg NA (2003) The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model. Evolution, 57, 1465 1477.
    • (2003) Evolution , vol.57 , pp. 1465-1477
    • Rosenberg, N.A.1
  • 69
    • 0036245438 scopus 로고    scopus 로고
    • Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
    • Rosenberg NA, Nordborg M (2002) Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nature Reviews Genetics, 3, 380 390.
    • (2002) Nature Reviews Genetics , vol.3 , pp. 380-390
    • Rosenberg, N.A.1    Nordborg, M.2
  • 70
    • 33749239225 scopus 로고    scopus 로고
    • Re-examination of the historic range of the greater prairie chicken using provenance data and DNA analysis of museum collections
    • Ross JD, Arndt AD, Smith RFC, Johnson JA, Bouzat JL (2006) Re-examination of the historic range of the greater prairie chicken using provenance data and DNA analysis of museum collections. Conservation Genetics, 7, 735 750.
    • (2006) Conservation Genetics , vol.7 , pp. 735-750
    • Ross, J.D.1    Arndt, A.D.2    Smith, R.F.C.3    Johnson, J.A.4    Bouzat, J.L.5
  • 72
    • 0001358866 scopus 로고
    • Prairie conservation in North America
    • Samson FB, Knopf FL (1994) Prairie conservation in North America. Bioscience, 44, 418 421.
    • (1994) Bioscience , vol.44 , pp. 418-421
    • Samson, F.B.1    Knopf, F.L.2
  • 74
    • 0032814604 scopus 로고    scopus 로고
    • Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA
    • Schneider S, Excoffier L (1999) Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics, 152, 1079 1089.
    • (1999) Genetics , vol.152 , pp. 1079-1089
    • Schneider, S.1    Excoffier, L.2
  • 75
    • 0002091777 scopus 로고
    • Greater prairie-chicken
    • In: (eds. Poole, A., Stettenheim, P., Gill, F.). The Academy of Natural Sciences, Philadelphia. The American Ornithologists' Union, Washington D.C.
    • Schroeder MA, Robb LA (1993) Greater prairie-chicken. In : The Birds of North America, No. 36 (eds Poole A, Stettenheim P, Gill F). The Academy of Natural Sciences, Philadelphia The American Ornithologists' Union, Washington D.C.
    • (1993) The Birds of North America, No. 36
    • Schroeder, M.A.1    Robb, L.A.2
  • 76
  • 77
    • 0029099781 scopus 로고
    • Properties of statistical tests of neutrality for DNA polymorphism data
    • Simonsen KL, Churchill GA, Aquadro CF (1995) Properties of statistical tests of neutrality for DNA polymorphism data. Genetics, 141, 413 429.
    • (1995) Genetics , vol.141 , pp. 413-429
    • Simonsen, K.L.1    Churchill, G.A.2    Aquadro, C.F.3
  • 80
    • 0025951996 scopus 로고
    • Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
    • Slatkin M, Hudson RR (1991) Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 129, 555 562.
    • (1991) Genetics , vol.129 , pp. 555-562
    • Slatkin, M.1    Hudson, R.R.2
  • 81
    • 26944460461 scopus 로고    scopus 로고
    • Phylogeography of the longhorn cactus beetle Moneilema appressum LeConte (Coleoptera: Cerambycidae): was the differentiation of the Madrean sky islands driven by Pleistocene climate changes?
    • Smith CI, Farrell BD (2005) Phylogeography of the longhorn cactus beetle Moneilema appressum LeConte (Coleoptera: Cerambycidae): was the differentiation of the Madrean sky islands driven by Pleistocene climate changes? Molecular Ecology, 14, 3049 3065.
    • (2005) Molecular Ecology , vol.14 , pp. 3049-3065
    • Smith, C.I.1    Farrell, B.D.2
  • 83
    • 33745910888 scopus 로고    scopus 로고
    • Recency, range expansion, and unsorted lineages: Implications for interpreting neutral genetic variation in the sharp-tailed grouse (Tympanuchus phasianellus)
    • Spaulding AW, Mock KE, Schroeder MA, Warheit KI (2006) Recency, range expansion, and unsorted lineages: implications for interpreting neutral genetic variation in the sharp-tailed grouse (Tympanuchus phasianellus). Molecular Ecology, 15, 2317 2332.
    • (2006) Molecular Ecology , vol.15 , pp. 2317-2332
    • Spaulding, A.W.1    Mock, K.E.2    Schroeder, M.A.3    Warheit, K.I.4
  • 84
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutational hypothesis by DNA polymorphism
    • Tajima F (1989a) Statistical method for testing the neutral mutational hypothesis by DNA polymorphism. Genetics, 123, 585 595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 85
    • 0024762773 scopus 로고
    • The effect of change in population size on DNA polymorphism
    • Tajima F (1989b) The effect of change in population size on DNA polymorphism. Genetics, 123, 597 601.
    • (1989) Genetics , vol.123 , pp. 597-601
    • Tajima, F.1
  • 86
    • 0002747469 scopus 로고
    • Measurement of DNA polymorphism
    • In: (eds. Takahata, N., Clark, A.G.), pp. Japan Scientific Societies Press/Sinauer Associates, Tokyo/Sunderland, Massachusetts.
    • Tajima F (1993) Measurement of DNA polymorphism. In : Mechanisms of Molecular Evolution. Introduction to Molecular Paleopopulation Biology (eds Takahata N, Clark AG), pp. 37 59. Japan Scientific Societies Press/Sinauer Associates, Tokyo/Sunderland, Massachusetts.
    • (1993) Mechanisms of Molecular Evolution. Introduction to Molecular Paleopopulation Biology , pp. 37-59
    • Tajima, F.1
  • 87
    • 0032055149 scopus 로고    scopus 로고
    • Nested clade analyses of phylogeographic data: Testing hypotheses about gene flow and population history
    • Templeton AR (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381 397.
    • (1998) Molecular Ecology , vol.7 , pp. 381-397
    • Templeton, A.R.1
  • 88
    • 1642339467 scopus 로고    scopus 로고
    • Statistical phylogeography: Methods of evaluating and minimizing inference errors
    • Templeton AR (2004) Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology, 13, 789 809.
    • (2004) Molecular Ecology , vol.13 , pp. 789-809
    • Templeton, A.R.1
  • 89
    • 0023425198 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila
    • Templeton AR, Boerwinkle E, Sing CF (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics, 117, 343 351.
    • (1987) Genetics , vol.117 , pp. 343-351
    • Templeton, A.R.1    Boerwinkle, E.2    Sing, C.F.3
  • 90
    • 0029058158 scopus 로고
    • Separating population structure from population history: A cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum
    • Templeton AR, Routman E, Phillips CA (1995) Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics, 140, 767 782.
    • (1995) Genetics , vol.140 , pp. 767-782
    • Templeton, A.R.1    Routman, E.2    Phillips, C.A.3
  • 91
    • 0027278852 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination
    • Templeton AR, Sing CF (1993) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics, 134, 659 669.
    • (1993) Genetics , vol.134 , pp. 659-669
    • Templeton, A.R.1    Sing, C.F.2
  • 92
    • 1242270728 scopus 로고    scopus 로고
    • Inferences about the structure and history of populations: Coalescents and intraspecific phylogeography
    • In: (eds. Singh, R.S., Uyenoyama, M.K.), pp. Cambridge University Press, Cambridge, UK.
    • Wakeley JW (2004) Inferences about the structure and history of populations: coalescents and intraspecific phylogeography. In : The Evolution of Population Biology (eds Singh RS, Uyenoyama MK), pp. 193 215. Cambridge University Press, Cambridge, UK.
    • (2004) The Evolution of Population Biology , pp. 193-215
    • Wakeley, J.W.1
  • 93
    • 1942508171 scopus 로고    scopus 로고
    • Genetic consequences of a severe population bottleneck in the Guadalupe fur seal (Arctocephalus townsendi)
    • Weber DS, Stewart BS, Lehman N (2004) Genetic consequences of a severe population bottleneck in the Guadalupe fur seal (Arctocephalus townsendi). Journal of Heredity, 95, 144 153.
    • (2004) Journal of Heredity , vol.95 , pp. 144-153
    • Weber, D.S.1    Stewart, B.S.2    Lehman, N.3
  • 94
    • 0032573504 scopus 로고    scopus 로고
    • Tracking the long-term decline and recovery of an isolated population
    • Westemeier RL, Brawn JD, Simpson SA et al. (1998) Tracking the long-term decline and recovery of an isolated population. Science, 282, 1695 1698.
    • (1998) Science , vol.282 , pp. 1695-1698
    • Westemeier, R.L.1    Brawn, J.D.2    Simpson, S.A.3
  • 95
    • 0036005519 scopus 로고    scopus 로고
    • Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus)
    • The authors are interested in the ecology, evolution and conservation of natural populations. Jeff Johnson conducted this research as part of his PhD. research. He is now an Assistant Research Scientist at the University of Michigan focusing on avian conservation and systematics. Peter Dunn is an Associate Professor who studies avian mating systems and conservation genetics. Juan Bouzat is an Associate Professor primarily interested in the effects of small population size, fragmentation and geographical isolation on the genetic diversity of natural populations.
    • Wiens JJ, Penkrot TA (2002) Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus). Systematic Biology, 51, 69 91.
    • (2002) Systematic Biology , vol.51 , pp. 69-91
    • Wiens, J.J.1    Penkrot, T.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.