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Volumn 107, Issue , 2015, Pages 289-310

Comparison of variants of canonical correlation analysis and partial least squares for combined analysis of MRI and genetic data

Author keywords

Canonical correlation analysis; Functional magnetic resonance imaging; Partial least squares correlation; Single nucleotide polymorphisms

Indexed keywords

AMYGDALOID NUCLEUS; ARTICLE; BAYESIAN INTER BATTERY FACTOR ANALYSIS; CEREBELLUM; CONTROLLED STUDY; FEMALE; GENE LINKAGE DISEQUILIBRIUM; GENETIC DATABASE; HIPPOCAMPUS; HUMAN; INTERMETHOD COMPARISON; LEFT HEMISPHERE; LINGUAL GYRUS; MAJOR CLINICAL STUDY; MALE; MULTIVARIATE ANALYSIS; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; OCCIPITAL CORTEX; PARTIAL LEAST SQUARES CORRELATION; PHENOTYPE; PUTAMEN; RIGHT HEMISPHERE; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; SPARSE CANONICAL CORRELATION ANALYSIS; ALGORITHM; BAYES THEOREM; COMPARATIVE STUDY; COMPUTER SIMULATION; GENETICS; GENOTYPE; PHYSIOLOGY; PSYCHOMOTOR PERFORMANCE; REGRESSION ANALYSIS; STATISTICAL MODEL; STATISTICS AND NUMERICAL DATA;

EID: 84920870218     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2014.12.025     Document Type: Article
Times cited : (51)

References (53)
  • 1
    • 77249177031 scopus 로고    scopus 로고
    • Dementia induces correlated reductions in white matter integrity and cortical thickness: a multivariate neuroimaging study with sparse canonical correlation analysis
    • Avants B.B., Cook P.A., Ungar L., Gee J.C., Grossman M. Dementia induces correlated reductions in white matter integrity and cortical thickness: a multivariate neuroimaging study with sparse canonical correlation analysis. NeuroImage 2010, 50(3):1004-1016.
    • (2010) NeuroImage , vol.50 , Issue.3 , pp. 1004-1016
    • Avants, B.B.1    Cook, P.A.2    Ungar, L.3    Gee, J.C.4    Grossman, M.5
  • 2
    • 79956332660 scopus 로고    scopus 로고
    • Emotional reactivity in chronic schizophrenia: structural and functional brain correlates and the influence of adverse childhood experiences
    • Benedetti F., Radaelli D., Poletti S., Falini A., Cavallaro R., Dallaspezia S., Riccaboni R., Scotti G., Smeraldi E. Emotional reactivity in chronic schizophrenia: structural and functional brain correlates and the influence of adverse childhood experiences. Psychol. Med. 2011, 41(3):509-519.
    • (2011) Psychol. Med. , vol.41 , Issue.3 , pp. 509-519
    • Benedetti, F.1    Radaelli, D.2    Poletti, S.3    Falini, A.4    Cavallaro, R.5    Dallaspezia, S.6    Riccaboni, R.7    Scotti, G.8    Smeraldi, E.9
  • 4
    • 85004775272 scopus 로고
    • The maximum-likelihood solution in inter-battery factor analysis
    • Browne M.W. The maximum-likelihood solution in inter-battery factor analysis. Br. J. Math. Stat. Psychol. 1979, 32:75-86.
    • (1979) Br. J. Math. Stat. Psychol. , vol.32 , pp. 75-86
    • Browne, M.W.1
  • 5
    • 0036668282 scopus 로고    scopus 로고
    • PHOX2 genes - from patterning to connectivity
    • Brunet J.F., Pattyn A. PHOX2 genes - from patterning to connectivity. Curr. Opin. Genet. Dev. 2002, 12:435-440.
    • (2002) Curr. Opin. Genet. Dev. , vol.12 , pp. 435-440
    • Brunet, J.F.1    Pattyn, A.2
  • 6
    • 84856997017 scopus 로고    scopus 로고
    • Interaction between trait anxiety and trait anger predict amygdala reactivity to angry facial expressions in men but not women
    • Carre J.M., Fisher P.M., Manuck S.B., Hariri A.R. Interaction between trait anxiety and trait anger predict amygdala reactivity to angry facial expressions in men but not women. Soc. Cogn. Affect. Neurosci. 2010, 7:213-221.
    • (2010) Soc. Cogn. Affect. Neurosci. , vol.7 , pp. 213-221
    • Carre, J.M.1    Fisher, P.M.2    Manuck, S.B.3    Hariri, A.R.4
  • 8
    • 0001363692 scopus 로고
    • BC(DEF) parameters. 2. An empirical structure-based scheme for the prediction of some physical properties
    • Cramer R.D. BC(DEF) parameters. 2. An empirical structure-based scheme for the prediction of some physical properties. J. Am. Chem. Soc. 1980, 102(6):1849-1859.
    • (1980) J. Am. Chem. Soc. , vol.102 , Issue.6 , pp. 1849-1859
    • Cramer, R.D.1
  • 9
    • 14544271524 scopus 로고    scopus 로고
    • Definition and clinical importance of haplotypes
    • Crawford D., Nickerson D. Definition and clinical importance of haplotypes. Annu. Rev. Med. 2005, 56:303-320.
    • (2005) Annu. Rev. Med. , vol.56 , pp. 303-320
    • Crawford, D.1    Nickerson, D.2
  • 11
    • 0008734663 scopus 로고    scopus 로고
    • Comparison of discrimination methods for the classification of tumors using gene expression data
    • Dudoit S., Fridlyand J., Speed T. Comparison of discrimination methods for the classification of tumors using gene expression data. J. Am. Stat. Assoc. 2001, 96:1151-1160.
    • (2001) J. Am. Stat. Assoc. , vol.96 , pp. 1151-1160
    • Dudoit, S.1    Fridlyand, J.2    Speed, T.3
  • 14
    • 0038823525 scopus 로고    scopus 로고
    • The endophenotype concept in psychiatry: etymology and strategic intentions
    • Gottesman I.I., Gould T.D. The endophenotype concept in psychiatry: etymology and strategic intentions. Am. J. Psychiatr. 2003, 160:636-645.
    • (2003) Am. J. Psychiatr. , vol.160 , pp. 636-645
    • Gottesman, I.I.1    Gould, T.D.2
  • 18
    • 0000107975 scopus 로고
    • Relations between two sets of variates
    • Hotelling H. Relations between two sets of variates. Biometrika 1936, 28(3/4):321-377.
    • (1936) Biometrika , vol.28 , Issue.3-4 , pp. 321-377
    • Hotelling, H.1
  • 22
    • 79955023796 scopus 로고    scopus 로고
    • Partial least squares (PLS) methods for neuroimaging: a tutorial and review
    • Krishnan A., Williams L.J., McIntosh A.R., Abdi H. Partial least squares (PLS) methods for neuroimaging: a tutorial and review. NeuroImage 2011, 56(2):455-475.
    • (2011) NeuroImage , vol.56 , Issue.2 , pp. 455-475
    • Krishnan, A.1    Williams, L.J.2    McIntosh, A.R.3    Abdi, H.4
  • 23
    • 67949091187 scopus 로고    scopus 로고
    • Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances
    • LaFramboise T. Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances. Nucleic Acids Res. 2009, 37(13):4181-4193.
    • (2009) Nucleic Acids Res. , vol.37 , Issue.13 , pp. 4181-4193
    • LaFramboise, T.1
  • 25
    • 35348858152 scopus 로고    scopus 로고
    • The amygdala
    • LeDoux J. The amygdala. Curr. Biol. 2007, 17:868-874.
    • (2007) Curr. Biol. , vol.17 , pp. 868-874
    • LeDoux, J.1
  • 26
    • 41849135735 scopus 로고    scopus 로고
    • Monoamine oxidase A-uVNTR genotype affects limbic brain activity in response to affective facial stimuli
    • Lee B.T., Ham B.J. Monoamine oxidase A-uVNTR genotype affects limbic brain activity in response to affective facial stimuli. NeuroReport 2008, 19(5):515-519.
    • (2008) NeuroReport , vol.19 , Issue.5 , pp. 515-519
    • Lee, B.T.1    Ham, B.J.2
  • 27
    • 41049102190 scopus 로고    scopus 로고
    • Generating samples for association studies based on HapMap data
    • Li J., Chen Y. Generating samples for association studies based on HapMap data. BMC Bioinforma. 2008, 9(44):1-13.
    • (2008) BMC Bioinforma. , vol.9 , Issue.44 , pp. 1-13
    • Li, J.1    Chen, Y.2
  • 28
    • 84881181566 scopus 로고    scopus 로고
    • Group sparse canonical correlation analysis for genomic data integration
    • Lin D., Zhang J., Li J., Calhoun V.D., Deng H.-W., Wang Y.-P. Group sparse canonical correlation analysis for genomic data integration. BMC Bioinforma. 2013, 14(1):245-260.
    • (2013) BMC Bioinforma. , vol.14 , Issue.1 , pp. 245-260
    • Lin, D.1    Zhang, J.2    Li, J.3    Calhoun, V.D.4    Deng, H.-W.5    Wang, Y.-P.6
  • 29
    • 7044249748 scopus 로고    scopus 로고
    • Partial least squares analysis of neuroimaging data: applications and advances
    • McIntosh A.R., Lobaugh N.J. Partial least squares analysis of neuroimaging data: applications and advances. NeuroImage 2004, 23(Supplement 1):S250-S263.
    • (2004) NeuroImage , vol.23 , pp. S250-S263
    • McIntosh, A.R.1    Lobaugh, N.J.2
  • 30
    • 0029941179 scopus 로고    scopus 로고
    • Spatial pattern analysis of functional brain images using partial least squares
    • McIntosh A.R., Bookstein F.L., Haxby J.V., Grady C.L. Spatial pattern analysis of functional brain images using partial least squares. NeuroImage 1996, 3(3):143-157.
    • (1996) NeuroImage , vol.3 , Issue.3 , pp. 143-157
    • McIntosh, A.R.1    Bookstein, F.L.2    Haxby, J.V.3    Grady, C.L.4
  • 31
    • 84863006865 scopus 로고    scopus 로고
    • The future of fMRI and genetics research
    • Meyer-Lindenberg A. The future of fMRI and genetics research. NeuroImage 2012, 62(2):1286-1292.
    • (2012) NeuroImage , vol.62 , Issue.2 , pp. 1286-1292
    • Meyer-Lindenberg, A.1
  • 32
    • 0032482419 scopus 로고    scopus 로고
    • Conscious and unconscious emotional learning in the human amygdala
    • Morris J.S., Ohman A., Dolan R.J. Conscious and unconscious emotional learning in the human amygdala. Nature 1998, 393:467-470.
    • (1998) Nature , vol.393 , pp. 467-470
    • Morris, J.S.1    Ohman, A.2    Dolan, R.J.3
  • 35
    • 38049082898 scopus 로고    scopus 로고
    • Genome-wide sparse canonical correlation of gene expression with genotypes
    • Parkhomenko E., Tritchler D., Beyene J. Genome-wide sparse canonical correlation of gene expression with genotypes. BMC Proc. 2007, 1:S119.
    • (2007) BMC Proc. , vol.1 , pp. S119
    • Parkhomenko, E.1    Tritchler, D.2    Beyene, J.3
  • 36
    • 62449336277 scopus 로고    scopus 로고
    • Sparse canonical correlation analysis with application to genomic data integration
    • Parkhomenko E., Tritchler D., Beyene J. Sparse canonical correlation analysis with application to genomic data integration. Stat. Appl. Genet. Mol. Biol. 2009, 8(1):1-34.
    • (2009) Stat. Appl. Genet. Mol. Biol. , vol.8 , Issue.1 , pp. 1-34
    • Parkhomenko, E.1    Tritchler, D.2    Beyene, J.3
  • 39
    • 84871367200 scopus 로고    scopus 로고
    • Guest editorial - neuroimaging and genetics: exploring, searching, and finding
    • Smit D.J.A., van't Ent D., de Zubicaray G., Stein J.L. Guest editorial - neuroimaging and genetics: exploring, searching, and finding. Twin Res. Hum. Genet. 2012, 15(3):267-272.
    • (2012) Twin Res. Hum. Genet. , vol.15 , Issue.3 , pp. 267-272
    • Smit, D.J.A.1    van't Ent, D.2    de Zubicaray, G.3    Stein, J.L.4
  • 41
    • 79959503826 scopus 로고    scopus 로고
    • The international HapMap project
    • The HapMap Consortium The international HapMap project. Nature 2003, 426:789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 42
    • 85194972808 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the lasso
    • Tibshirani R. Regression shrinkage and selection via the lasso. J. Roy. Stat. Soc. B 1996, 58(1):267-288.
    • (1996) J. Roy. Stat. Soc. B , vol.58 , Issue.1 , pp. 267-288
    • Tibshirani, R.1
  • 43
    • 2342533421 scopus 로고    scopus 로고
    • Class prediction by nearest shrunken centroids, with applications to DNA microarrays
    • Tibshirani R., Hastie T., Narasimhan B., Chu G. Class prediction by nearest shrunken centroids, with applications to DNA microarrays. Stat. Sci. 2003, 18:104-117.
    • (2003) Stat. Sci. , vol.18 , pp. 104-117
    • Tibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Chu, G.4
  • 44
    • 0000503256 scopus 로고
    • An inter-battery method of factor analysis
    • Tucker L.R. An inter-battery method of factor analysis. Psychometrika 1958, 23(2):111-136.
    • (1958) Psychometrika , vol.23 , Issue.2 , pp. 111-136
    • Tucker, L.R.1
  • 46
    • 38849098283 scopus 로고    scopus 로고
    • Quantifying the association between gene expressions and DNA-markers by penalized canonical correlation analysis
    • Waaijenborg S., Verselewel De Witt Hamer P., Zwinderman A. Quantifying the association between gene expressions and DNA-markers by penalized canonical correlation analysis. Stat. Appl. Genet. Mol. Biol. 2008, 7(1):1-27.
    • (2008) Stat. Appl. Genet. Mol. Biol. , vol.7 , Issue.1 , pp. 1-27
    • Waaijenborg, S.1    Verselewel De Witt Hamer, P.2    Zwinderman, A.3
  • 48
    • 0012184060 scopus 로고    scopus 로고
    • A survey of partial least squares (PLS) methods, with emphasis on the two-block case
    • University of Washington, Department of Statistics
    • Wegelin J.A. A survey of partial least squares (PLS) methods, with emphasis on the two-block case. Technical Report 371 2000, University of Washington, Department of Statistics.
    • (2000) Technical Report , vol.371
    • Wegelin, J.A.1
  • 50
    • 84874371777 scopus 로고    scopus 로고
    • CHull: a generic convex-hull-based model selection method
    • Wilderjans T.F., Ceulemans E., Meers K. CHull: a generic convex-hull-based model selection method. Behav. Res. Methods 2013, 45:1-15.
    • (2013) Behav. Res. Methods , vol.45 , pp. 1-15
    • Wilderjans, T.F.1    Ceulemans, E.2    Meers, K.3
  • 51
    • 68249115586 scopus 로고    scopus 로고
    • Extensions of sparse canonical correlation analysis with applications to genomic data
    • Witten D.M., Tibshirani R.J. Extensions of sparse canonical correlation analysis with applications to genomic data. Stat. Appl. Genet. Mol. Biol. 2009, 8(1):1-27.
    • (2009) Stat. Appl. Genet. Mol. Biol. , vol.8 , Issue.1 , pp. 1-27
    • Witten, D.M.1    Tibshirani, R.J.2
  • 52
    • 70149096300 scopus 로고    scopus 로고
    • A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
    • Witten D.M., Tibshirani R.J., Hastie T. A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. Biostatistics 2009, 10(3):515-534.
    • (2009) Biostatistics , vol.10 , Issue.3 , pp. 515-534
    • Witten, D.M.1    Tibshirani, R.J.2    Hastie, T.3


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