메뉴 건너뛰기




Volumn 25, Issue 1, 2015, Pages 89-99

Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin

Author keywords

[No Author keywords available]

Indexed keywords

BEAF 32 PROTEIN; CP190 PROTEIN; DNA BINDING PROTEIN; DROSOPHILA PROTEIN; PITA PROTEIN; TRANSCRIPTION FACTOR CTCF; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN; ZIPIC PROTEIN; CHROMATIN; CP190 PROTEIN, DROSOPHILA; MICROTUBULE ASSOCIATED PROTEIN; NUCLEAR PROTEIN; SPOTTED-DICK PROTEIN, DROSOPHILA; TRANSCRIPTION FACTOR;

EID: 84920656317     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.174169.114     Document Type: Article
Times cited : (95)

References (58)
  • 2
    • 84875877761 scopus 로고    scopus 로고
    • Functional sub-division of the Drosophila genome via chromatin looping: The emerging importance of CP190
    • Ahanger SH, Shouche YS, Mishra RK. 2013. Functional sub-division of the Drosophila genome via chromatin looping: The emerging importance of CP190. Nucleus 4: 115-122.
    • (2013) Nucleus , vol.4 , pp. 115-122
    • Ahanger, S.H.1    Shouche, Y.S.2    Mishra, R.K.3
  • 4
    • 80052357143 scopus 로고    scopus 로고
    • Drosophila BTB/POZ domains of "ttk group" can form multimers and selectively interact with each other
    • Bonchuk A, Denisov S, Georgiev P, Maksimenko O. 2011. Drosophila BTB/POZ domains of " ttk group" can form multimers and selectively interact with each other. J Mol Biol 412: 423-436.
    • (2011) J Mol Biol , vol.412 , pp. 423-436
    • Bonchuk, A.1    Denisov, S.2    Georgiev, P.3    Maksimenko, O.4
  • 5
    • 66149164708 scopus 로고    scopus 로고
    • Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions
    • Bushey AM, Ramos E, Corces VG. 2009. Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. Genes Dev 23: 1338-1350.
    • (2009) Genes Dev , vol.23 , pp. 1338-1350
    • Bushey, A.M.1    Ramos, E.2    Corces, V.G.3
  • 7
    • 84892445699 scopus 로고    scopus 로고
    • Making connections: Insulators organize eukaryotic chromosomes into independent cis-regulatory networks
    • Chetverina D, Aoki T, Erokhin M, Georgiev P, Schedl P. 2014. Making connections: Insulators organize eukaryotic chromosomes into independent cis-regulatory networks. Bioessays 36: 163-172.
    • (2014) Bioessays , vol.36 , pp. 163-172
    • Chetverina, D.1    Aoki, T.2    Erokhin, M.3    Georgiev, P.4    Schedl, P.5
  • 8
    • 12244297808 scopus 로고    scopus 로고
    • Genomic expansion and clustering of ZAD-containing C2H2 zinc-finger genes in Drosophila
    • Chun g HR, Schäfer U, Jäckle H, Böhm S. 2002. Genomic expansion and clustering of ZAD-containing C2H2 zinc-finger genes in Drosophila. EMBO Rep 3: 1158-1162.
    • (2002) EMBO Rep , vol.3 , pp. 1158-1162
    • Chung, H.R.1    Schäfer, U.2    Jäckle, H.3    Böhm, S.4
  • 10
    • 84898663884 scopus 로고    scopus 로고
    • Ibf1 and Ibf2 are novel CP190-interacting proteins required for insulator function
    • Cuartero S, Fres-an U, Reina O, Planet E, Espin-as ML. 2014. Ibf1 and Ibf2 are novel CP190-interacting proteins required for insulator function. EMBO J 33: 637-647.
    • (2014) EMBO J , vol.33 , pp. 637-647
    • Cuartero, S.1    Fres-An, U.2    Reina, O.3    Planet, E.4    Espin-As, M.L.5
  • 12
    • 0033567325 scopus 로고    scopus 로고
    • The Zw5 protein, a component of the scs chromatin domain boundary, is able to block enhancer-promoter interaction
    • Gaszner M Vazquez J Schedl P. 1999 The Zw5 protein, a component of the scs chromatin domain boundary, is able to block enhancer-promoter interaction Genes Dev 13 2098-2107.
    • (1999) Genes Dev , vol.13 , pp. 2098-2107
    • Gaszner, M.1    Vazquez, J.2    Schedl, P.3
  • 13
    • 0031033913 scopus 로고    scopus 로고
    • Characterization of functional domains of the su(Hw) protein that mediate the silencing effect of mod(mdg4) mutations
    • Gdula DA, Corces VG. 1997. Characterization of functional domains of the su(Hw) protein that mediate the silencing effect of mod(mdg4) mutations. Genetics 145: 153-161.
    • (1997) Genetics , vol.145 , pp. 153-161
    • Gdula, D.A.1    Corces, V.G.2
  • 14
    • 36749079905 scopus 로고    scopus 로고
    • Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila
    • Gerasimova TI, Lei EP, Bush ey AM, Corces VG. 2007. Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila. Mol Cell 28: 761-772.
    • (2007) Mol Cell , vol.28 , pp. 761-772
    • Gerasimova, T.I.1    Lei, E.P.2    Bushey, A.M.3    Corces, V.G.4
  • 15
    • 0030922269 scopus 로고    scopus 로고
    • The role of insulator elements in defining domains of gene expression
    • Geyer PK. 1997. The role of insulator elements in defining domains of gene expression. Curr Opin Genet Dev 7: 242-248.
    • (1997) Curr Opin Genet Dev , vol.7 , pp. 242-248
    • Geyer, P.K.1
  • 16
    • 0023445598 scopus 로고
    • Separate regulatory elements are responsible for the complex pattern of tissue-specific and developmental transcription of the yellow locus in D rosophila melanogaster
    • Geyer PK, Corces VG. 1987. Separate regulatory elements are responsible for the complex pattern of tissue-specific and developmental transcription of the yellow locus in D rosophila melanogaster. Genes Dev 1: 996-1004.
    • (1987) Genes Dev , vol.1 , pp. 996-1004
    • Geyer, P.K.1    Corces, V.G.2
  • 19
    • 17644406720 scopus 로고    scopus 로고
    • The Mcp element from the bithorax complex conta ins an insulator that is capable of pairwise interactions and can facilitate enhancer-promoter communication
    • Gruzdeva N, Kyrchanova O, Parshikov A, Kullyev A, Georgiev P. 2005. The Mcp element from the bithorax complex conta ins an insulator that is capable of pairwise interactions and can facilitate enhancer-promoter communication. Mol Cell Biol 25: 3682-3689.
    • (2005) Mol Cell Biol , vol.25 , pp. 3682-3689
    • Gruzdeva, N.1    Kyrchanova, O.2    Parshikov, A.3    Kullyev, A.4    Georgiev, P.5
  • 20
    • 84857251182 scopus 로고    scopus 로고
    • CTCF: Insights into insulator function during development
    • Herold M, Bartkuhn M, Renkawitz R. 2012. CTCF: Insights into insulator function during development. Development 139: 1045-1057.
    • (2012) Development , vol.139 , pp. 1045-1057
    • Herold, M.1    Bartkuhn, M.2    Renkawitz, R.3
  • 22
    • 67650093438 scopus 로고    scopus 로고
    • Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription
    • Jiang N, Emberly E, Cuvier O, Hart CM. 2009. Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription. Mol Cell Biol 29: 3556-3568.
    • (2009) Mol Cell Biol , vol.29 , pp. 3556-3568
    • Jiang, N.1    Emberly, E.2    Cuvier, O.3    Hart, C.M.4
  • 23
    • 0026092947 scopus 로고
    • Accurate and efficient rna polymerase ii transcription with a soluble nuclear fraction derived from drosophila embryos
    • Kamakaka RT, Tyree CM, Kadonaga JT. 1991. Accurate and efficient RNA polymerase II transcription with a soluble nuclear fraction derived from Drosophila embryos. Proc Natl Acad Sci 88: 1024-102 8.
    • (1991) Proc Natl Acad Sci , vol.88 , pp. 1024-1028
    • Kamakaka, R.T.1    Tyree, C.M.2    Kadonaga, J.T.3
  • 24
    • 0028846687 scopus 로고
    • Cp60: A microtubule-associated protein that is localized to the centrosome in a cell cycle-specific manner
    • Kellogg DR, Oegema K, Raff J, Schneider K, Alberts BM. 1995. CP60: A microtubule-associated protein that is localized to the centrosome in a cell cycle-specific manner. Mol Biol Cell 6: 1673-1684 .
    • (1995) Mol Biol Cell , vol.6 , pp. 1673-1684
    • Kellogg, D.R.1    Oegema, K.2    Raff, J.3    Schneider, K.4    Alberts, B.M.5
  • 25
    • 84891017304 scopus 로고    scopus 로고
    • Chromatin insulators and long-distance interactions in Drosophila
    • Kyrchanova O, Georgiev P. 2014. Chromatin insulators and long-distance interactions in Drosophila. FEBS Lett 588: 8-14.
    • (2014) FEBS Lett , vol.588 , pp. 8-14
    • Kyrchanova, O.1    Georgiev, P.2
  • 26
    • 34147217573 scopus 로고    scopus 로고
    • Study of the functional interaction between mcp insulators from the drosophila bithorax complex: Effects of insulator pairing on enhancer-promoter communication
    • Kyrchanova O, Toshchakov S, Parshikov A, Georgiev P. 2007. Study of the functional interaction between Mcp insulators from the Drosophila bithorax complex: Effects of insulator pairing on enhancer-promoter communication. Mol Cell Biol 27: 3035-3043.
    • (2007) Mol Cell Biol , vol.27 , pp. 3035-3043
    • Kyrchanova, O.1    Toshchakov, S.2    Parshikov, A.3    Georgiev, P.4
  • 27
    • 58749098787 scopus 로고    scopus 로고
    • Orientation-dependent interaction between Drosophila insulators is a property of this class of regulatory elements
    • Kyrchanova O, Chetverina D, Maksimenko O, Kullyev A, Georgiev P. 2008a . Orientation-dependent interaction between Drosophila insulators is a property of this class of regulatory elements. Nucleic Acids Res 36: 7019-7028.
    • (2008) Nucleic Acids Res , vol.36 , pp. 7019-7028
    • Kyrchanova, O.1    Chetverina, D.2    Maksimenko, O.3    Kullyev, A.4    Georgiev, P.5
  • 28
    • 44949137376 scopus 로고    scopus 로고
    • Functional interaction between the fab-7 and fab-8 boundaries and the upstream promoter region in the drosophila abd-b gene
    • Kyrch anova O, Toshchakov S, Podstreshnaya Y, Parshikov A, Georgiev P. 2008b . Functional interaction between the Fab-7 and Fab-8 boundaries and the upstream promoter region in the Drosophila Abd-B gene. Mol Cell Biol 28: 4188-4195.
    • (2008) Mol Cell Biol , vol.28 , pp. 4188-4195
    • Kyrchanova, O.1    Toshchakov, S.2    Podstreshnaya, Y.3    Parshikov, A.4    Georgiev, P.5
  • 29
    • 79955626797 scopus 로고    scopus 로고
    • Selective interactions of boundaries with upstream region of Abd-B promoter in Drosophila bithorax complex and rol e of dCTCF in this process
    • Kyrchanova O, Ivlieva T, Toshchakov S, Parshikov A, Maksimenko O, Georgiev P. 2011. Selective interactions of boundaries with upstream region of Abd-B promoter in Drosophila bithorax complex and rol e of dCTCF in this process. Nucleic Acids Res 39: 3042-3052.
    • (2011) Nucleic Acids Res , vol.39 , pp. 3042-3052
    • Kyrchanova, O.1    Ivlieva, T.2    Toshchakov, S.3    Parshikov, A.4    Maksimenko, O.5    Georgiev, P.6
  • 32
    • 84876396171 scopus 로고    scopus 로고
    • Genome-wide localization of exo some components to active promoters and chromatin insulators in Drosophila
    • Lim SJ, Boyle PJ, Chinen M, Dale RK, Lei EP. 2013. Genome-wide localization of exo some components to active promoters and chromatin insulators in Drosophila. Nucleic Acids Res 41: 2963-2980.
    • (2013) Nucleic Acids Res , vol.41 , pp. 2963-2980
    • Lim, S.J.1    Boyle, P.J.2    Chinen, M.3    Dale, R.K.4    Lei, E.P.5
  • 33
    • 79958117256 scopus 로고    scopus 로고
    • Meme-chip: Motif analysis of large dna datasets
    • Machanick P, Bailey TL. 2011. MEME-ChIP: Motif analysis of large DNA datasets. Bioinformatics 27: 1696-1697.
    • (2011) Bioinformatics , vol.27 , pp. 1696-1697
    • Machanick, P.1    Bailey, T.L.2
  • 34
    • 84897683223 scopus 로고    scopus 로고
    • Mechanisms and proteins involved in long-distance interactions
    • Maksimenko O Georgiev P 2014 Mechanisms and proteins involved in long-distance interactions. Front Genet 5 28.
    • (2014) Front Genet , vol.5 , pp. 28
    • Maksimenko, O.1    Georgiev, P.2
  • 35
    • 0031931429 scopus 로고    scopus 로고
    • Polycomb group repression is blocked by the Drosophila suppressor of Hairy-wing [su(Hw)] insulator
    • Mallin DR, Myung JS, Patton JS, Geyer PK. 1998. Polycomb group repression is blocked by the Drosophila suppressor of Hairy-wing [su(Hw)] insulator. Genetics 148: 331-339.
    • (1998) Genetics , vol.148 , pp. 331-339
    • Mallin, D.R.1    Myung, J.S.2    Patton, J.S.3    Geyer, P.K.4
  • 36
    • 84896735322 scopus 로고    scopus 로고
    • Surviving an identity crisis: A revised view of chromatin insulators in the genomics era
    • Matzat LH, Lei EP. 2013. Surviving an identity crisis: A revised view of chromatin insulators in the genomics era. Biochim Biophys Acta 1839: 203-214.
    • (2013) Biochim Biophys Acta , vol.1839 , pp. 203-214
    • Matzat, L.H.1    Lei, E.P.2
  • 40
    • 84860388943 scopus 로고    scopus 로고
    • RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function
    • Moshkovich N, Nisha P, Boyle PJ, Thompson BA, Dale RK, Lei EP. 2011. RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function. Genes Dev 25: 1686-1701.
    • (2011) Genes Dev , vol.25 , pp. 1686-1701
    • Moshkovich, N.1    Nisha, P.2    Boyle, P.J.3    Thompson, B.A.4    Dale, R.K.5    Lei, E.P.6
  • 41
    • 0032712145 scopus 로고    scopus 로고
    • The mcp element from the Drosophila melanogaster bithorax complex mediates long-distance regulatory interactions
    • Muller M, Hagstrom K, Gyurkovics H, Pirrotta V, Schedl P. 1999. The mcp element from the Drosophila melanogaster bithorax complex mediates long-distance regulatory interactions. Genetics 153: 1333-1356.
    • (1999) Genetics , vol.153 , pp. 1333-1356
    • Muller, M.1    Hagstrom, K.2    Gyurkovics, H.3    Pirrotta, V.4    Schedl, P.5
  • 44
    • 84870278203 scopus 로고    scopus 로고
    • Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome
    • Ni X, Zhang YE, N-egre N, Chen S, Long M, White KP. 2012. Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome. PLoS Biol 10: E1001420.
    • (2012) PLoS Biol , vol.10 , pp. e1001420
    • Ni, X.1    Zhang, Y.E.2    N-Egre, N.3    Chen, S.4    Long, M.5    White, K.P.6
  • 45
    • 78650674271 scopus 로고    scopus 로고
    • The chromosomal association/dissociation of the chromatin insulator protein cp190 of drosophila melanogaster is mediated by the btb/poz domain and two acidic regions
    • Oliver D, Sheehan B , South H, Akbari O, Pai CY. 2010. The chromosomal association/dissociation of the chromatin insulator protein Cp190 of Drosophila melanogaster is mediated by the BTB/POZ domain and two acidic regions. BMC Cell Biol 11: 1 01.
    • (2010) BMC Cell Biol , vol.11 , pp. 101
    • Oliver, D.1    Sheehan, B.2    South, H.3    Akbari, O.4    Pai, C.Y.5
  • 46
    • 9744257012 scopus 로고    scopus 로고
    • The centrosomal protein CP190 is a component of the gypsy chromatin insulator
    • Pai CY, Lei EP, Ghosh D, Corces VG. 2004. The centrosomal protein CP190 is a component of the gypsy chromatin insulator. Mol Cell 16: 737-748.
    • (2004) Mol Cell , vol.16 , pp. 737-748
    • Pai, C.Y.1    Lei, E.P.2    Ghosh, D.3    Corces, V.G.4
  • 47
    • 77952563619 scopus 로고    scopus 로고
    • Insulators and promoters: Closer than we think
    • Raab JR, Kamakaka RT. 2010. Insulators and promoters: Closer than we think. Nat Rev Genet 11: 439-446.
    • (2010) Nat Rev Genet , vol.11 , pp. 439-446
    • Raab, J.R.1    Kamakaka, R.T.2
  • 49
    • 0032840462 scopus 로고    scopus 로고
    • Enhancer blocking by the Drosophila gypsy insulator depends upon insulator anatomy and enhancer strength
    • Scott KC, Taubman AD, Geyer PK. 1999. Enhancer blocking by the Drosophila gypsy insulator depends upon insulator anatomy and enhancer strength. Genetics 153: 787-798.
    • (1999) Genetics , vol.153 , pp. 787-798
    • Scott, K.C.1    Taubman, A.D.2    Geyer, P.K.3
  • 51
    • 0030959781 scopus 로고    scopus 로고
    • Chromatin insulator elements block the silencing of a target gene by the drosophila polycomb response element (pre) but allow trans interactions between PREs on different chromosomes
    • Sigrist CJ, Pirrotta V. 1997. Chromatin insulator elements block the silencing of a target gene by the Drosophila polycomb response element (PRE) but allow trans interactions between PREs on different chromosomes. Genetics 147: 209-22 1.
    • (1997) Genetics , vol.147 , pp. 209-221
    • Sigrist, C.J.1    Pirrotta, V.2
  • 52
    • 84863199475 scopus 로고    scopus 로고
    • Genome-wide studies of the multi-zinc finger Drosophila Suppressor of Hairy-wing protein in the ovary
    • Soshnev AA, He B, Baxley RM, Jiang N, Hart CM, Tan K, Geyer PK. 2012. Genome-wide studies of the multi-zinc finger Drosophila Suppressor of Hairy-wing protein in the ovary. Nucleic Acids Res 40: 5415-5431.
    • (2012) Nucleic Acids Res , vol.40 , pp. 5415-5431
    • Soshnev, A.A.1    He, B.2    Baxley, R.M.3    Jiang, N.4    Hart, C.M.5    Tan, K.6    Geyer, P.K.7
  • 53
    • 84881563163 scopus 로고    scopus 로고
    • The insulator protein Suppressor ofHairy-wing is an essential transcriptional repressor in the Drosophila ovary
    • Soshnev AA, Baxley RM, Manak JR, Tan K, Geyer PK. 2013. The insulator protein Suppressor ofHairy-wing is an essential transcriptional repressor in the Drosophila ovary. Development 140: 36 13-3623.
    • (2013) Development , vol.140 , pp. 3613-3623
    • Soshnev, A.A.1    Baxley, R.M.2    Manak, J.R.3    Tan, K.4    Geyer, P.K.5
  • 54
    • 77950101058 scopus 로고    scopus 로고
    • The transcriptional repressor Kaiso localizes at the mitotic spindle and is a constituent of the per icentriolar material
    • Soubry A, Staes K, Parthoens E, Noppen S, Stove C, Bogaert P, van Hengel J, van Roy F. 2010. The transcriptional repressor Kaiso localizes at the mitotic spindle and is a constituent of the per icentriolar material. PLoS ONE 5: E9203.
    • (2010) PLoS ONE , vol.5 , pp. e9203
    • Soubry, A.1    Staes, K.2    Parthoens, E.3    Noppen, S.4    Stove, C.5    Bogaert, P.6    Van Hengel, J.7    Van Roy, F.8
  • 55
    • 84868335552 scopus 로고    scopus 로고
    • Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains
    • Van Bortle K Ramos E Takenaka N Yang J Wahi J.E. Corces VG 2012 Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains. Genome Res 22 2176-2187.
    • (2012) Genome Res , vol.22 , pp. 2176-2187
    • Van Bortle, K.1    Ramos, E.2    Takenaka, N.3    Yang, J.4    Wahi, J.E.5    Corces, V.G.6
  • 56
    • 85006305723 scopus 로고    scopus 로고
    • Insulator function and topological domain border strength scale with architectura l protein occupancy
    • Van Bortle K, Nichols MH, Li L, Ong CT, Takenaka N, Qin ZS, Corces VG. 2014. Insulator function and topological domain border strength scale with architectura l protein occupancy. Genome Biol 15: R82.
    • (2014) Genome Biol , vol.15 , pp. 82
    • Van Bortle, K.1    Nichols, M.H.2    Li, L.3    Ong, C.T.4    Takenaka, N.5    Qin, Z.S.6    Corces, V.G.7
  • 57
    • 33745599723 scopus 로고    scopus 로고
    • The Mcp element mediates stable long-range chromosome-chromosome interactions in Drosophila
    • Vazquez J, Müller M, Pirrotta V, Sedat JW. 2006. The Mcp element mediates stable long-range chromosome-chromosome interactions in Drosophila. Mol Biol Cell 17: 2158-2165.
    • (2006) Mol Biol Cell , vol.17 , pp. 2158-2165
    • Vazquez, J.1    Müller, M.2    Pirrotta, V.3    Sedat, J.W.4
  • 58
    • 84868314500 scopus 로고    scopus 로고
    • The BEAF-32 insulator coordinates genome organization and function during the evolution of Drosophila species
    • Yang J, Ramos E, Corces VG. 2012. The BEAF-32 insulator coordinates genome organization and function during the evolution of Drosophila species. Genome Res 22: 2199-2207.
    • (2012) Genome Res , vol.22 , pp. 2199-2207
    • Yang, J.1    Ramos, E.2    Corces, V.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.