-
1
-
-
84875877761
-
Functional sub-division of the Drosophila genome via chromatin looping: The emerging importance of CP190
-
Ahanger SH, Shouche YS, Mishra RK, (2013) Functional sub-division of the Drosophila genome via chromatin looping: the emerging importance of CP190. Nucleus 4: 115-122
-
(2013)
Nucleus
, vol.4
, pp. 115-122
-
-
Ahanger, S.H.1
Shouche, Y.S.2
Mishra, R.K.3
-
2
-
-
0034284435
-
The BED finger, a novel DNA-binding domain in chromatin-boundary-element- binding proteins and transposases
-
DOI 10.1016/S0968-0004(00)01620-0, PII S0968000400016200
-
Aravind L, (2000) The BED finger, a novel DNA-binding domain in chromatin-boundary-element-binding proteins and transposases. Trends Biochem Sci 25: 421-423 (Pubitemid 30662402)
-
(2000)
Trends in Biochemical Sciences
, vol.25
, Issue.9
, pp. 421-423
-
-
Aravind, L.1
-
3
-
-
0034010530
-
The Fab-8 boundary defines the distal limit of the bithorax complex iab-7 domain and insulates iab-7 from initiation elements and a PRE in the adjacent iab-8 domain
-
Barges S, Mihaly J, Galloni M, Hagstrom K, Muller M, Shanower G, Schedl P, Gyurkovics H, Karch F, (2000) The Fab-8 boundary defines the distal limit of the bithorax complex iab-7 domain and insulates iab-7 from initiation elements and a PRE in the adjacent iab-8 domain. Development 127: 779-790 (Pubitemid 30129024)
-
(2000)
Development
, vol.127
, Issue.4
, pp. 779-790
-
-
Barges, S.1
Mihaly, J.2
Galloni, M.3
Hagstrom, K.4
Muller, M.5
Shanower, G.6
Schedl, P.7
Gyurkovics, H.8
Karch, F.9
-
4
-
-
65449116170
-
Active promoters and insulators are marked by the centrosomal protein 190
-
Bartkuhn M, Straub T, Herold M, Herrmann M, Rathke C, Saumweber H, Gilfillan GD, Becker PB, Renkawitz R, (2009) Active promoters and insulators are marked by the centrosomal protein 190. EMBO J 28: 877-888
-
(2009)
EMBO J
, vol.28
, pp. 877-888
-
-
Bartkuhn, M.1
Straub, T.2
Herold, M.3
Herrmann, M.4
Rathke, C.5
Saumweber, H.6
Gilfillan, G.D.7
Becker, P.B.8
Renkawitz, R.9
-
5
-
-
0037938506
-
A novel boundary element may facilitate independent gene regulation in the Antennapedia complex of Drosophila
-
DOI 10.1093/emboj/cdg297
-
Belozerov VE, Majumder P, Shen P, Cai HN, (2003) A novel boundary element may facilitate independent gene regulation in the Antennapedia complex of Drosophila. EMBO J 22: 3113-3121 (Pubitemid 36758631)
-
(2003)
EMBO Journal
, vol.22
, Issue.12
, pp. 3113-3121
-
-
Belozerov, V.E.1
Majumder, P.2
Shen, P.3
Cai, H.N.4
-
6
-
-
66149164708
-
Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions
-
Bushey AM, Ramos E, Corces VG, (2009) Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. Genes Dev 23: 1338-1350
-
(2009)
Genes Dev
, vol.23
, pp. 1338-1350
-
-
Bushey, A.M.1
Ramos, E.2
Corces, V.G.3
-
7
-
-
84873364433
-
Ash2 acts as an ecdysone receptor coactivator by stabilizing the histone methyltransferase Trr
-
Carbonell A, Mazo A, Serras F, Corominas M, (2013) Ash2 acts as an ecdysone receptor coactivator by stabilizing the histone methyltransferase Trr. Mol Biol Cell 24: 361-372
-
(2013)
Mol Biol Cell
, vol.24
, pp. 361-372
-
-
Carbonell, A.1
Mazo, A.2
Serras, F.3
Corominas, M.4
-
8
-
-
67649647759
-
Stalled Hox promoters as chromosomal boundaries
-
Chopra VS, Cande J, Hong JW, Levine M, (2009) Stalled Hox promoters as chromosomal boundaries. Genes Dev 23: 1505-1509
-
(2009)
Genes Dev
, vol.23
, pp. 1505-1509
-
-
Chopra, V.S.1
Cande, J.2
Hong, J.W.3
Levine, M.4
-
9
-
-
60149095014
-
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
-
Cuddapah S, Jothi R, Schones DE, Roh TY, Cui K, Zhao K, (2009) Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res 19: 24-32
-
(2009)
Genome Res
, vol.19
, pp. 24-32
-
-
Cuddapah, S.1
Jothi, R.2
Schones, D.E.3
Roh, T.Y.4
Cui, K.5
Zhao, K.6
-
10
-
-
0021100690
-
Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
-
Dignam JD, Lebovitz RM, Roeder RG, (1983) Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res 11: 1475-1489
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 1475-1489
-
-
Dignam, J.D.1
Lebovitz, R.M.2
Roeder, R.G.3
-
11
-
-
80051751605
-
TRNA genes protect a reporter gene from epigenetic silencing in mouse cells
-
Ebersole T, Kim JH, Samoshkin A, Kouprina N, Pavlicek A, White RJ, Larionov V, (2011) tRNA genes protect a reporter gene from epigenetic silencing in mouse cells. Cell Cycle 10: 2779-2791
-
(2011)
Cell Cycle
, vol.10
, pp. 2779-2791
-
-
Ebersole, T.1
Kim, J.H.2
Samoshkin, A.3
Kouprina, N.4
Pavlicek, A.5
White, R.J.6
Larionov, V.7
-
12
-
-
55749105905
-
Drosophila HP1c isoform interacts with the zinc-finger proteins WOC and Relative-of-WOC to regulate gene expression
-
Font-Burgada J, Rossell D, Auer H, Azorin F, (2008) Drosophila HP1c isoform interacts with the zinc-finger proteins WOC and Relative-of-WOC to regulate gene expression. Genes Dev 22: 3007-3023
-
(2008)
Genes Dev
, vol.22
, pp. 3007-3023
-
-
Font-Burgada, J.1
Rossell, D.2
Auer, H.3
Azorin, F.4
-
13
-
-
36749079905
-
Coordinated Control of dCTCF and gypsy Chromatin Insulators in Drosophila
-
DOI 10.1016/j.molcel.2007.09.024, PII S1097276507006363
-
Gerasimova TI, Lei EP, Bushey AM, Corces VG, (2007) Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila. Mol Cell 28: 761-772 (Pubitemid 350217054)
-
(2007)
Molecular Cell
, vol.28
, Issue.5
, pp. 761-772
-
-
Gerasimova, T.I.1
Lei, E.P.2
Bushey, A.M.3
Corces, V.G.4
-
15
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP, (2003) Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 31: e15
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
16
-
-
0028148117
-
Mcp and Fab-7: Molecular analysis of putative boundaries of cis-regulatory domains in the bithorax complex of Drosophila melanogaster
-
Karch F, Galloni M, Sipos L, Gausz J, Gyurkovics H, Sched P, (1994) Mcp and Fab-7: molecular analysis of putative boundaries of cis-regulatory domains in the bithorax complex of Drosophila melanogaster. Nucleic Acids Res 22: 3138-3146 (Pubitemid 24260647)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.15
, pp. 3138-3146
-
-
Karch, F.1
Galloni, M.2
Sipos, L.3
Gausz, J.4
Gyurkovics, H.5
Schedl, P.6
-
17
-
-
33947201809
-
Analysis of the Vertebrate Insulator Protein CTCF-Binding Sites in the Human Genome
-
DOI 10.1016/j.cell.2006.12.048, PII S009286740700205X
-
Kim TH, Abdullaev ZK, Smith AD, Ching KA, Loukinov DI, Green RD, Zhang MQ, Lobanenkov VV, Ren B, (2007) Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128: 1231-1245 (Pubitemid 46427876)
-
(2007)
Cell
, vol.128
, Issue.6
, pp. 1231-1245
-
-
Kim, T.H.1
Abdullaev, Z.K.2
Smith, A.D.3
Ching, K.A.4
Loukinov, D.I.5
Green, RolandD.6
Zhang, M.Q.7
Lobanenkov, V.V.8
Ren, B.9
-
18
-
-
84868129311
-
DKDM5/LID regulates H3K4me3 dynamics at the transcription-start site (TSS) of actively transcribed developmental genes
-
Lloret-Llinares M, Perez-Lluch S, Rossell D, Moran T, Ponsa-Cobas J, Auer H, Corominas M, Azorin F, (2012) dKDM5/LID regulates H3K4me3 dynamics at the transcription-start site (TSS) of actively transcribed developmental genes. Nucleic Acids Res 40: 9493-9505
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 9493-9505
-
-
Lloret-Llinares, M.1
Perez-Lluch, S.2
Rossell, D.3
Moran, T.4
Ponsa-Cobas, J.5
Auer, H.6
Corominas, M.7
Azorin, F.8
-
19
-
-
34447515727
-
Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis
-
DOI 10.1126/science.1140871
-
Lunyak VV, Prefontaine GG, Nunez E, Cramer T, Ju BG, Ohgi KA, Hutt K, Roy R, Garcia-Diaz A, Zhu X, Yung Y, Montoliu L, Glass CK, Rosenfeld MG, (2007) Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis. Science 317: 248-251 (Pubitemid 47076201)
-
(2007)
Science
, vol.317
, Issue.5835
, pp. 248-251
-
-
Lunyak, V.V.1
Prefontaine, G.G.2
Nunez, E.3
Cramer, T.4
Ju, B.-G.5
Ohgi, K.A.6
Hutt, K.7
Roy, R.8
Garcia-Diaz, A.9
Zhu, X.10
Yung, Y.11
Montoliu, L.12
Glass, C.K.13
Rosenfeld, M.G.14
-
20
-
-
35548971216
-
Making connections: Boundaries and insulators in Drosophila
-
DOI 10.1016/j.gde.2007.08.002, PII S0959437X07001530, Differentiation and Gene Regulation
-
Maeda RK, Karch F, (2007) Making connections: boundaries and insulators in Drosophila. Curr Opin Genet Dev 17: 394-399 (Pubitemid 350016895)
-
(2007)
Current Opinion in Genetics and Development
, vol.17
, Issue.5
, pp. 394-399
-
-
Maeda, R.K.1
Karch, F.2
-
21
-
-
79958834622
-
Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes
-
Martin D, Pantoja C, Fernandez Minan A, Valdes-Quezada C, Molto E, Matesanz F, Bogdanovic O, de la Calle-Mustienes E, Dominguez O, Taher L, Furlan-Magaril M, Alcina A, Canon S, Fedetz M, Blasco MA, Pereira PS, Ovcharenko I, Recillas-Targa F, Montoliu L, Manzanares M, et al, (2011) Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes. Nat Struct Mol Biol 18: 708-714
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 708-714
-
-
Martin, D.1
Pantoja, C.2
Fernandez Minan, A.3
Valdes-Quezada, C.4
Molto, E.5
Matesanz, F.6
Bogdanovic, O.7
De La Calle-Mustienes, E.8
Dominguez, O.9
Taher, L.10
Furlan-Magaril, M.11
Alcina, A.12
Canon, S.13
Fedetz, M.14
Blasco, M.A.15
Pereira, P.S.16
Ovcharenko, I.17
Recillas-Targa, F.18
Montoliu, L.19
Manzanares, M.20
more..
-
22
-
-
34948900929
-
The Drosophila insulator proteins CTCF and CP190 link enhancer blocking to body patterning
-
DOI 10.1038/sj.emboj.7601851, PII 7601851
-
Mohan M, Bartkuhn M, Herold M, Philippen A, Heinl N, Bardenhagen I, Leers J, White RAH, Renkawitz-Pohl R, Saumweber H, Renkawitz R, (2007) The Drosophila insulator proteins CTCF and CP190 link enhancer blocking to body patterning. EMBO J 26: 4203-4214 (Pubitemid 47525162)
-
(2007)
EMBO Journal
, vol.26
, Issue.19
, pp. 4203-4214
-
-
Mohan, M.1
Bartkuhn, M.2
Herold, M.3
Philippen, A.4
Heinl, N.5
Bardenhagen, I.6
Leers, J.7
White, R.A.H.8
Renkawitz-Pohl, R.9
Saumweber, H.10
Renkawitz, R.11
-
23
-
-
84861917541
-
Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-alpha gene expression
-
Monahan K, Rudnick ND, Kehayova PD, Pauli F, Newberry KM, Myers RM, Maniatis T, (2012) Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-alpha gene expression. Proc Natl Acad Sci USA 109: 9125-9130
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 9125-9130
-
-
Monahan, K.1
Rudnick, N.D.2
Kehayova, P.D.3
Pauli, F.4
Newberry, K.M.5
Myers, R.M.6
Maniatis, T.7
-
24
-
-
76749089660
-
A comprehensive map of insulator elements for the Drosophila genome
-
Negre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP, (2010) A comprehensive map of insulator elements for the Drosophila genome. PLoS Genet 6: e1000814
-
(2010)
PLoS Genet
, vol.6
-
-
Negre, N.1
Brown, C.D.2
Shah, P.K.3
Kheradpour, P.4
Morrison, C.A.5
Henikoff, J.G.6
Feng, X.7
Ahmad, K.8
Russell, S.9
White, R.A.10
Stein, L.11
Henikoff, S.12
Kellis, M.13
White, K.P.14
-
25
-
-
33646912186
-
A Role for TFIIIC Transcription Factor Complex in Genome Organization
-
DOI 10.1016/j.cell.2006.04.028, PII S0092867406005629
-
Noma K, Cam HP, Maraia RJ, Grewal SI, (2006) A role for TFIIIC transcription factor complex in genome organization. Cell 125: 859-872 (Pubitemid 43795193)
-
(2006)
Cell
, vol.125
, Issue.5
, pp. 859-872
-
-
Noma, K.-i.1
Cam, H.P.2
Maraia, R.J.3
Grewal, S.I.S.4
-
26
-
-
24044461066
-
Barrier function at HMR
-
DOI 10.1016/j.molcel.2005.07.022, PII S1097276505015108
-
Oki M, Kamakaka RT, (2005) Barrier function at HMR. Mol Cell 19: 707-716 (Pubitemid 41219446)
-
(2005)
Molecular Cell
, vol.19
, Issue.5
, pp. 707-716
-
-
Oki, M.1
Kamakaka, R.T.2
-
28
-
-
9744257012
-
The centrosomal protein CP190 is a component of the gypsy chromatin insulator
-
DOI 10.1016/j.molcel.2004.11.004, PII S1097276504006732
-
Pai C-Y, Lei EP, Ghosh D, Corces VG, (2004) The centrosomal protein CP190 is a component of the gypsy chromatin insulator. Mol Cell 16: 737-748 (Pubitemid 39586532)
-
(2004)
Molecular Cell
, vol.16
, Issue.5
, pp. 737-748
-
-
Pai, C.-Y.1
Lei, E.P.2
Ghosh, D.3
Corces, V.G.4
-
30
-
-
57149112527
-
Characterization of new regulatory elements within the Drosophila bithorax complex
-
Perez-Lluch S, Cuartero S, Azorin F, Espinas ML, (2008) Characterization of new regulatory elements within the Drosophila bithorax complex. Nucleic Acids Res 36: 6926-6933
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6926-6933
-
-
Perez-Lluch, S.1
Cuartero, S.2
Azorin, F.3
Espinas, M.L.4
-
31
-
-
84857190176
-
Human tRNA genes function as chromatin insulators
-
Raab JR, Chiu J, Zhu J, Katzman S, Kurukuti S, Wade PA, Haussler D, Kamakaka RT, (2012) Human tRNA genes function as chromatin insulators. EMBO J 31: 330-350
-
(2012)
EMBO J
, vol.31
, pp. 330-350
-
-
Raab, J.R.1
Chiu, J.2
Zhu, J.3
Katzman, S.4
Kurukuti, S.5
Wade, P.A.6
Haussler, D.7
Kamakaka, R.T.8
-
32
-
-
84868334509
-
Nature and function of insulator protein binding sites in the Drosophila genome
-
Schwartz YB, Linder-Basso D, Kharchenko PV, Tolstorukov MY, Kim M, Li HB, Gorchakov AA, Minoda A, Shanower G, Alekseyenko AA, Riddle NC, Jung YL, Gu T, Plachetka A, Elgin SC, Kuroda MI, Park PJ, Savitsky M, Karpen GH, Pirrotta V, (2012) Nature and function of insulator protein binding sites in the Drosophila genome. Genome Res 22: 2188-2198
-
(2012)
Genome Res
, vol.22
, pp. 2188-2198
-
-
Schwartz, Y.B.1
Linder-Basso, D.2
Kharchenko, P.V.3
Tolstorukov, M.Y.4
Kim, M.5
Li, H.B.6
Gorchakov, A.A.7
Minoda, A.8
Shanower, G.9
Alekseyenko, A.A.10
Riddle, N.C.11
Jung, Y.L.12
Gu, T.13
Plachetka, A.14
Elgin, S.C.15
Kuroda, M.I.16
Park, P.J.17
Savitsky, M.18
Karpen, G.H.19
Pirrotta, V.20
more..
-
33
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen Y, Yue F, McCleary DF, Ye Z, Edsall L, Kuan S, Wagner U, Dixon J, Lee L, Lobanenkov VV, Ren B, (2012) A map of the cis-regulatory sequences in the mouse genome. Nature 488: 116-120
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
Ren, B.11
-
34
-
-
34247625135
-
Pharmacologic disruption of polycomb-repressive complex 2-mediated gene repression selectively induces apoptosis in cancer cells
-
DOI 10.1101/gad.1524107
-
Tan J, Yang X, Zhuang L, Jiang X, Chen W, Lee PL, Karuturi RK, Tan PB, Liu ET, Yu Q, (2007) Pharmacologic disruption of Polycomb-repressive complex 2-mediated gene repression selectively induces apoptosis in cancer cells. Genes Dev 21: 1050-1063 (Pubitemid 46686474)
-
(2007)
Genes and Development
, vol.21
, Issue.9
, pp. 1050-1063
-
-
Tan, J.1
Yang, X.2
Zhuang, L.3
Jiang, X.4
Chen, W.5
Puay, L.L.6
Karuturi, R.K.M.7
Tan, P.B.O.8
Liu, E.T.9
Yu, Q.10
-
36
-
-
84877795975
-
The role of chromatin insulators in nuclear architecture and genome function
-
Van Bortle K, Corces VG, (2013) The role of chromatin insulators in nuclear architecture and genome function. Curr Opin Genet Dev 23: 212-218
-
(2013)
Curr Opin Genet Dev
, vol.23
, pp. 212-218
-
-
Van Bortle, K.1
Corces, V.G.2
-
37
-
-
84868335552
-
Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains
-
Van Bortle K, Ramos E, Takenaka N, Yang J, Wahi JE, Corces VG, (2012) Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains. Genome Res 22: 2176-2187
-
(2012)
Genome Res
, vol.22
, pp. 2176-2187
-
-
Van Bortle, K.1
Ramos, E.2
Takenaka, N.3
Yang, J.4
Wahi, J.E.5
Corces, V.G.6
-
38
-
-
14644444197
-
Analyzing protein complexes in Drosophila with tandem affinity purification-mass spectrometry
-
DOI 10.1002/dvdy.20272
-
Veraksa A, Bauer A, Artavanis-Tsakonas S, (2005) Analyzing protein complexes in Drosophila with tandem affinity purification-mass spectrometry. Dev Dyn 232: 827-834 (Pubitemid 40315300)
-
(2005)
Developmental Dynamics
, vol.232
, Issue.3
, pp. 827-834
-
-
Veraksa, A.1
Bauer, A.2
Artavanis-Tsakonas, S.3
-
39
-
-
35548990188
-
We gather together: Insulators and genome organization
-
DOI 10.1016/j.gde.2007.08.005, PII S0959437X07001566, Differentiation and Gene Regulation
-
Wallace JA, Felsenfeld G, (2007) We gather together: insulators and genome organization. Curr Opin Genet Dev 17: 400-407 (Pubitemid 350016897)
-
(2007)
Current Opinion in Genetics and Development
, vol.17
, Issue.5
, pp. 400-407
-
-
Wallace, J.A.1
Felsenfeld, G.2
-
40
-
-
0036467996
-
Insulators: Many functions, many mechanisms
-
DOI 10.1101/gad.954702
-
West AG, Gaszner M, Felsenfeld G, (2002) Insulators: many functions, many mechanisms. Genes Dev 16: 271-288 (Pubitemid 34111407)
-
(2002)
Genes and Development
, vol.16
, Issue.3
, pp. 271-288
-
-
West, A.G.1
Gaszner, M.2
Felsenfeld, G.3
-
41
-
-
80053617964
-
Regulation of chromatin organization and inducible gene expression by a Drosophila insulator
-
Wood AM, Van Bortle K, Ramos E, Takenaka N, Rohrbaugh M, Jones BC, Jones KC, Corces VG, (2011) Regulation of chromatin organization and inducible gene expression by a Drosophila insulator. Mol Cell 44: 29-38
-
(2011)
Mol Cell
, vol.44
, pp. 29-38
-
-
Wood, A.M.1
Van Bortle, K.2
Ramos, E.3
Takenaka, N.4
Rohrbaugh, M.5
Jones, B.C.6
Jones, K.C.7
Corces, V.G.8
-
42
-
-
84868314500
-
The BEAF-32 insulator coordinates genome organization and function during the evolution of Drosophila species
-
Yang J, Ramos E, Corces VG, (2012) The BEAF-32 insulator coordinates genome organization and function during the evolution of Drosophila species. Genome Res 22: 2199-2207
-
(2012)
Genome Res
, vol.22
, pp. 2199-2207
-
-
Yang, J.1
Ramos, E.2
Corces, V.G.3
|