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Volumn 41, Issue 5, 2013, Pages 2963-2980

Genome-wide localization of exosome components to active promoters and chromatin insulators in Drosophila

Author keywords

[No Author keywords available]

Indexed keywords

RNA; TRANSCRIPTION FACTOR CTCF;

EID: 84876396171     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt037     Document Type: Article
Times cited : (31)

References (78)
  • 2
    • 57049152286 scopus 로고    scopus 로고
    • Structural organization of the RNA-degrading exosome
    • Lorentzen, E., Basquin, J. and Conti, E. (2008) Structural organization of the RNA-degrading exosome. Curr. Opin. Struct. Biol., 18, 709-713.
    • (2008) Curr. Opin. Struct. Biol. , vol.18 , pp. 709-713
    • Lorentzen, E.1    Basquin, J.2    Conti, E.3
  • 3
    • 70350336247 scopus 로고    scopus 로고
    • The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation
    • Bonneau, F., Basquin, J., Ebert, J., Lorentzen, E. and Conti, E. (2009) The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation. Cell, 139, 547-559.
    • (2009) Cell , vol.139 , pp. 547-559
    • Bonneau, F.1    Basquin, J.2    Ebert, J.3    Lorentzen, E.4    Conti, E.5
  • 4
    • 78650472239 scopus 로고    scopus 로고
    • The exozyme model: A continuum of functionally distinct complexes
    • Kiss, D.L. and Andrulis, E.D. (2011) The exozyme model: a continuum of functionally distinct complexes. RNA, 17, 1-13.
    • (2011) RNA , vol.17 , pp. 1-13
    • Kiss, D.L.1    Andrulis, E.D.2
  • 5
    • 67650492477 scopus 로고    scopus 로고
    • Mechanisms of nuclear mRNA quality control
    • Fasken, M.B. and Corbett, A.H. (2009) Mechanisms of nuclear mRNA quality control. RNA Biol., 6, 237-241.
    • (2009) RNA Biol. , vol.6 , pp. 237-241
    • Fasken, M.B.1    Corbett, A.H.2
  • 7
    • 79960569959 scopus 로고    scopus 로고
    • Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome
    • Flynn, R.A., Almada, A.E., Zamudio, J.R. and Sharp, P.A. (2011) Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome. Proc. Natl Acad. Sci. USA, 108, 10460-10465.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 10460-10465
    • Flynn, R.A.1    Almada, A.E.2    Zamudio, J.R.3    Sharp, P.A.4
  • 8
    • 30744467674 scopus 로고    scopus 로고
    • Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts
    • Vasiljeva, L. and Buratowski, S. (2006) Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts. Mol. Cell, 21, 239-248.
    • (2006) Mol. Cell , vol.21 , pp. 239-248
    • Vasiljeva, L.1    Buratowski, S.2
  • 9
    • 33748424364 scopus 로고    scopus 로고
    • Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3
    • Arigo, J.T., Eyler, D.E., Carroll, K.L. and Corden, J.L. (2006) Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3. Mol. Cell, 23, 841-851.
    • (2006) Mol. Cell , vol.23 , pp. 841-851
    • Arigo, J.T.1    Eyler, D.E.2    Carroll, K.L.3    Corden, J.L.4
  • 10
    • 33748435751 scopus 로고    scopus 로고
    • Transcription termination and nuclear degradation of cryptic unstable transcripts: A role for the nrd1-nab3 pathway in genome surveillance
    • Thiebaut, M., Kisseleva-Romanova, E., Rougemaille, M., Boulay, J. and Libri, D. (2006) Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance. Mol. Cell, 23, 853-864.
    • (2006) Mol. Cell , vol.23 , pp. 853-864
    • Thiebaut, M.1    Kisseleva-Romanova, E.2    Rougemaille, M.3    Boulay, J.4    Libri, D.5
  • 11
    • 7544236961 scopus 로고    scopus 로고
    • Genome-wide mRNA surveillance is coupled to mRNA export
    • Hieronymus, H., Yu, M.C. and Silver, P.A. (2004) Genome-wide mRNA surveillance is coupled to mRNA export. Genes Dev., 18, 2652-2662.
    • (2004) Genes Dev. , vol.18 , pp. 2652-2662
    • Hieronymus, H.1    Yu, M.C.2    Silver, P.A.3
  • 13
    • 84864072645 scopus 로고    scopus 로고
    • Rrp6 is recruited to transcribed genes and accompanies the spliced mRNA to the nuclear pore
    • Hessle, V., von Euler, A., Gonzalez de Valdivia, E. and Visa, N. (2012) Rrp6 is recruited to transcribed genes and accompanies the spliced mRNA to the nuclear pore. RNA, 18, 1466-1474.
    • (2012) RNA , vol.18 , pp. 1466-1474
    • Hessle, V.1    Von Euler, A.2    Gonzalez De Valdivia, E.3    Visa, N.4
  • 14
    • 0037180825 scopus 로고    scopus 로고
    • The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila
    • Andrulis, E.D., Werner, J., Nazarian, A., Erdjument-Bromage, H., Tempst, P. and Lis, J.T. (2002) The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila. Nature, 420, 837-841.
    • (2002) Nature , vol.420 , pp. 837-841
    • Andrulis, E.D.1    Werner, J.2    Nazarian, A.3    Erdjument-Bromage, H.4    Tempst, P.5    Lis, J.T.6
  • 16
    • 35548971216 scopus 로고    scopus 로고
    • Making connections: Boundaries and insulators in Drosophila
    • Maeda, R.K. and Karch, F. (2007) Making connections: boundaries and insulators in Drosophila. Curr. Opin. Genet. Dev., 17, 394-399.
    • (2007) Curr. Opin. Genet. Dev. , vol.17 , pp. 394-399
    • Maeda, R.K.1    Karch, F.2
  • 17
    • 0033567325 scopus 로고    scopus 로고
    • The Zw5 protein, a component of the scs chromatin domain boundary, is able to block enhancer-promoter interaction
    • Gaszner, M., Vazquez, J. and Schedl, P. (1999) The Zw5 protein, a component of the scs chromatin domain boundary, is able to block enhancer-promoter interaction. Genes Dev., 13, 2098-2107.
    • (1999) Genes Dev. , vol.13 , pp. 2098-2107
    • Gaszner, M.1    Vazquez, J.2    Schedl, P.3
  • 18
    • 0029063587 scopus 로고
    • Visualization of chromosomal domains with boundary element-associated factor BEAF-32
    • Zhao, K., Hart, C.M. and Laemmli, U.K. (1995) Visualization of chromosomal domains with boundary element-associated factor BEAF-32. Cell, 81, 879-889.
    • (1995) Cell , vol.81 , pp. 879-889
    • Zhao, K.1    Hart, C.M.2    Laemmli, U.K.3
  • 19
    • 0037338603 scopus 로고    scopus 로고
    • Protein:protein interactions and the pairing of boundary elements in vivo
    • Blanton, J., Gaszner, M. and Schedl, P. (2003) Protein:protein interactions and the pairing of boundary elements in vivo. Genes Dev., 17, 664-675.
    • (2003) Genes Dev. , vol.17 , pp. 664-675
    • Blanton, J.1    Gaszner, M.2    Schedl, P.3
  • 20
    • 0034010530 scopus 로고    scopus 로고
    • The Fab-8 boundary defines the distal limit of the bithorax complex iab-7 domain and insulates iab-7 from initiation elements and a PRE in the adjacent iab-8 domain
    • Barges, S., Mihaly, J., Galloni, M., Hagstrom, K., Muller, M., Shanower, G., Schedl, P., Gyurkovics, H. and Karch, F. (2000) The Fab-8 boundary defines the distal limit of the bithorax complex iab-7 domain and insulates iab-7 from initiation elements and a PRE in the adjacent iab-8 domain. Development, 127, 779-790.
    • (2000) Development , vol.127 , pp. 779-790
    • Barges, S.1    Mihaly, J.2    Galloni, M.3    Hagstrom, K.4    Muller, M.5    Shanower, G.6    Schedl, P.7    Gyurkovics, H.8    Karch, F.9
  • 22
    • 36749079905 scopus 로고    scopus 로고
    • Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila
    • Gerasimova, T.I., Lei, E.P., Bushey, A.M. and Corces, V.G. (2007) Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila. Mol. Cell, 28, 761-772.
    • (2007) Mol. Cell , vol.28 , pp. 761-772
    • Gerasimova, T.I.1    Lei, E.P.2    Bushey, A.M.3    Corces, V.G.4
  • 24
    • 44949137376 scopus 로고    scopus 로고
    • Functional interaction between the Fab-7 and Fab-8 boundaries and the upstream promoter region in the Drosophila Abd-B gene
    • Kyrchanova, O., Toshchakov, S., Podstreshnaya, Y., Parshikov, A. and Georgiev, P. (2008) Functional interaction between the Fab-7 and Fab-8 boundaries and the upstream promoter region in the Drosophila Abd-B gene. Mol. Cell. Biol., 28, 4188-4195.
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 4188-4195
    • Kyrchanova, O.1    Toshchakov, S.2    Podstreshnaya, Y.3    Parshikov, A.4    Georgiev, P.5
  • 25
    • 84860388943 scopus 로고    scopus 로고
    • RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function
    • Moshkovich, N., Nisha, P., Boyle, P.J., Thompson, B.A., Dale, R.K. and Lei, E.P. (2011) RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function. Genes Dev., 25, 1686-1701.
    • (2011) Genes Dev. , vol.25 , pp. 1686-1701
    • Moshkovich, N.1    Nisha, P.2    Boyle, P.J.3    Thompson, B.A.4    Dale, R.K.5    Lei, E.P.6
  • 26
    • 9744257012 scopus 로고    scopus 로고
    • The centrosomal protein CP190 is a component of the gypsy chromatin insulator
    • Pai, C.Y., Lei, E.P., Ghosh, D. and Corces, V.G. (2004) The centrosomal protein CP190 is a component of the gypsy chromatin insulator. Mol. Cell, 16, 737-748.
    • (2004) Mol. Cell , vol.16 , pp. 737-748
    • Pai, C.Y.1    Lei, E.P.2    Ghosh, D.3    Corces, V.G.4
  • 28
    • 67650093438 scopus 로고    scopus 로고
    • Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription
    • Jiang, N., Emberly, E., Cuvier, O. and Hart, C.M. (2009) Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription. Mol. Cell. Biol., 29, 3556-3568.
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 3556-3568
    • Jiang, N.1    Emberly, E.2    Cuvier, O.3    Hart, C.M.4
  • 29
    • 84891722352 scopus 로고    scopus 로고
    • BEAF regulates cell-cycle genes through the controlled deposition of H3K9 methylation marks into its conserved dual-core binding sites
    • Emberly, E., Blattes, R., Schuettengruber, B., Hennion, M., Jiang, N., Hart, C.M., Kas, E. and Cuvier, O. (2008) BEAF regulates cell-cycle genes through the controlled deposition of H3K9 methylation marks into its conserved dual-core binding sites. PLoS Biol., 6, 2896-2910.
    • (2008) PLoS Biol. , vol.6 , pp. 2896-2910
    • Emberly, E.1    Blattes, R.2    Schuettengruber, B.3    Hennion, M.4    Jiang, N.5    Hart, C.M.6    Kas, E.7    Cuvier, O.8
  • 30
    • 79851485916 scopus 로고    scopus 로고
    • Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level
    • Rach, E.A., Winter, D.R., Benjamin, A.M., Corcoran, D.L., Ni, T., Zhu, J. and Ohler, U. (2011) Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level. PLoS Genet., 7, e1001274.
    • (2011) PLoS Genet. , vol.7
    • Rach, E.A.1    Winter, D.R.2    Benjamin, A.M.3    Corcoran, D.L.4    Ni, T.5    Zhu, J.6    Ohler, U.7
  • 31
    • 25844444153 scopus 로고    scopus 로고
    • The ubiquitin ligase dTopors directs the nuclear organization of a chromatin insulator
    • Capelson, M. and Corces, V.G. (2005) The ubiquitin ligase dTopors directs the nuclear organization of a chromatin insulator. Mol. Cell, 20, 105-116.
    • (2005) Mol. Cell , vol.20 , pp. 105-116
    • Capelson, M.1    Corces, V.G.2
  • 33
    • 33746472891 scopus 로고    scopus 로고
    • RNA interference machinery influences the nuclear organization of a chromatin insulator
    • Lei, E.P. and Corces, V.G. (2006) RNA interference machinery influences the nuclear organization of a chromatin insulator. Nat. Genet., 38, 936-941.
    • (2006) Nat. Genet. , vol.38 , pp. 936-941
    • Lei, E.P.1    Corces, V.G.2
  • 34
    • 84870661927 scopus 로고    scopus 로고
    • Tissue-specific regulation of chromatin insulator function
    • Matzat, L.H., Dale, R.K., Moshkovich, N. and Lei, E.P. (2012) Tissue-specific regulation of chromatin insulator function. PLoS Genet., 8, e1003069.
    • (2012) PLoS Genet. , vol.8
    • Matzat, L.H.1    Dale, R.K.2    Moshkovich, N.3    Lei, E.P.4
  • 35
    • 77950387204 scopus 로고    scopus 로고
    • HP1 recruitment in the absence of argonaute proteins in Drosophila
    • Moshkovich, N. and Lei, E.P. (2010) HP1 recruitment in the absence of argonaute proteins in Drosophila. PLoS Genet., 6, e1000880.
    • (2010) PLoS Genet. , vol.6
    • Moshkovich, N.1    Lei, E.P.2
  • 36
    • 33644854765 scopus 로고    scopus 로고
    • Differential distribution of exosome subunits at the nuclear lamina and in cytoplasmic foci
    • Graham, A.C., Kiss, D.L. and Andrulis, E.D. (2006) Differential distribution of exosome subunits at the nuclear lamina and in cytoplasmic foci. Mol. Biol. Cell, 17, 1399-1409.
    • (2006) Mol. Biol. Cell , vol.17 , pp. 1399-1409
    • Graham, A.C.1    Kiss, D.L.2    Andrulis, E.D.3
  • 37
    • 66149164708 scopus 로고    scopus 로고
    • Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions
    • Bushey, A.M., Ramos, E. and Corces, V.G. (2009) Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. Genes Dev., 23, 1338-1350.
    • (2009) Genes Dev. , vol.23 , pp. 1338-1350
    • Bushey, A.M.1    Ramos, E.2    Corces, V.G.3
  • 38
    • 0033638334 scopus 로고    scopus 로고
    • A chromatin insulator determines the nuclear localization of DNA
    • Gerasimova, T.I., Byrd, K. and Corces, V.G. (2000) A chromatin insulator determines the nuclear localization of DNA. Mol. Cell, 6, 1025-1035.
    • (2000) Mol. Cell , vol.6 , pp. 1025-1035
    • Gerasimova, T.I.1    Byrd, K.2    Corces, V.G.3
  • 39
    • 0030198913 scopus 로고    scopus 로고
    • Intermediate filament protein polymerization: Molecular analysis of Drosophila nuclear lamin head-to-tail binding
    • Stuurman, N., Sasse, B. and Fisher, P.A. (1996) Intermediate filament protein polymerization: molecular analysis of Drosophila nuclear lamin head-to-tail binding. J. Struct. Biol., 117, 1-15.
    • (1996) J. Struct. Biol. , vol.117 , pp. 1-15
    • Stuurman, N.1    Sasse, B.2    Fisher, P.A.3
  • 40
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. and Salzberg, S.L. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 42
    • 40749104852 scopus 로고    scopus 로고
    • An extended transcriptional network for pluripotency of embryonic stem cells
    • Kim, J., Chu, J., Shen, X., Wang, J. and Orkin, S.H. (2008) An extended transcriptional network for pluripotency of embryonic stem cells. Cell, 132, 1049-1061.
    • (2008) Cell , vol.132 , pp. 1049-1061
    • Kim, J.1    Chu, J.2    Shen, X.3    Wang, J.4    Orkin, S.H.5
  • 43
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 44
    • 83355177243 scopus 로고    scopus 로고
    • Pybedtools: A flexible Python library for manipulating genomic datasets and annotations
    • Dale, R.K., Pedersen, B.S. and Quinlan, A.R. (2011) Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. Bioinformatics, 27, 3423-3424.
    • (2011) Bioinformatics , vol.27 , pp. 3423-3424
    • Dale, R.K.1    Pedersen, B.S.2    Quinlan, A.R.3
  • 47
    • 80052456164 scopus 로고    scopus 로고
    • The tumour suppressor L(3)mbt inhibits neuroepithelial proliferation and acts on insulator elements
    • Richter, C., Oktaba, K., Steinmann, J., Muller, J. and Knoblich, J.A. (2011) The tumour suppressor L(3)mbt inhibits neuroepithelial proliferation and acts on insulator elements. Nat. Cell. Biol., 13, 1029-1039.
    • (2011) Nat Cell Biol , vol.13 , pp. 1029-1039
    • Richter, C.1    Oktaba, K.2    Steinmann, J.3    Muller, J.4    Knoblich, J.A.5
  • 55
    • 84860852665 scopus 로고    scopus 로고
    • Hsp90 globally targets paused RNA polymerase to regulate gene expression in response to environmental stimuli
    • Sawarkar, R., Sievers, C. and Paro, R. (2012) Hsp90 globally targets paused RNA polymerase to regulate gene expression in response to environmental stimuli. Cell, 149, 807-818.
    • (2012) Cell , vol.149 , pp. 807-818
    • Sawarkar, R.1    Sievers, C.2    Paro, R.3
  • 56
    • 34047118042 scopus 로고    scopus 로고
    • Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion
    • Fury, W., Batliwalla, F., Gregersen, P.K. and Li, W. (2006) Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion. Conf. Proc. IEEE Eng. Med. Biol. Soc., 1, 5531-5534.
    • (2006) Conf. Proc. IEEE Eng. Med. Biol. Soc. , vol.1 , pp. 5531-5534
    • Fury, W.1    Batliwalla, F.2    Gregersen, P.K.3    Li, W.4
  • 57
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da, W., Sherman, B.T. and Lempicki, R.A. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc., 4, 44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 58
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • Huang da, W., Sherman, B.T. and Lempicki, R.A. (2009) Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res., 37, 1-13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 59
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin, M. (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal, 17, 10-12.
    • (2011) EMBnet.journal , vol.17 , pp. 10-12
    • Martin, M.1
  • 60
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L. and Salzberg, S.L. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 61
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. and Huber, W. (2010) Differential expression analysis for sequence count data. Genome Biol., 11, R106.
    • (2010) Genome Biol. , vol.11
    • Anders, S.1    Huber, W.2
  • 62
    • 84869083054 scopus 로고    scopus 로고
    • Df31 protein and snoRNAs maintain accessible higher-order structures of chromatin
    • Schubert, T., Pusch, M.C., Diermeier, S., Benes, V., Kremmer, E., Imhof, A. and Langst, G. (2012) Df31 protein and snoRNAs maintain accessible higher-order structures of chromatin. Mol. Cell, 48, 434-444.
    • (2012) Mol. Cell , vol.48 , pp. 434-444
    • Schubert, T.1    Pusch, M.C.2    Diermeier, S.3    Benes, V.4    Kremmer, E.5    Imhof, A.6    Langst, G.7
  • 63
    • 57449100870 scopus 로고    scopus 로고
    • Design and analysis of ChIP-seq experiments for DNA-binding proteins
    • Kharchenko, P.V., Tolstorukov, M.Y. and Park, P.J. (2008) Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nat. Biotechnol., 26, 1351-1359.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1351-1359
    • Kharchenko, P.V.1    Tolstorukov, M.Y.2    Park, P.J.3
  • 65
    • 23644457818 scopus 로고    scopus 로고
    • Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs
    • Huang, Z.P., Zhou, H., He, H.L., Chen, C.L., Liang, D. and Qu, L.H. (2005) Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs. RNA, 11, 1303-1316.
    • (2005) RNA , vol.11 , pp. 1303-1316
    • Huang, Z.P.1    Zhou, H.2    He, H.L.3    Chen, C.L.4    Liang, D.5    Qu, L.H.6
  • 66
    • 77950244851 scopus 로고    scopus 로고
    • Genome-wide analysis reveals distinct substrate specificities of Rrp6, Dis3, and core exosome subunits
    • Kiss, D.L. and Andrulis, E.D. (2010) Genome-wide analysis reveals distinct substrate specificities of Rrp6, Dis3, and core exosome subunits. RNA, 16, 781-791.
    • (2010) RNA , vol.16 , pp. 781-791
    • Kiss, D.L.1    Andrulis, E.D.2
  • 68
    • 0035878119 scopus 로고    scopus 로고
    • Messenger RNAs are recruited for nuclear export during transcription
    • Lei, E.P., Krebber, H. and Silver, P.A. (2001) Messenger RNAs are recruited for nuclear export during transcription. Genes Dev., 15, 1771-1782.
    • (2001) Genes Dev. , vol.15 , pp. 1771-1782
    • Lei, E.P.1    Krebber, H.2    Silver, P.A.3
  • 69
    • 0034307008 scopus 로고    scopus 로고
    • Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription
    • Komarnitsky, P., Cho, E.J. and Buratowski, S. (2000) Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription. Genes Dev., 14, 2452-2460.
    • (2000) Genes Dev. , vol.14 , pp. 2452-2460
    • Komarnitsky, P.1    Cho, E.J.2    Buratowski, S.3
  • 70
    • 60549114880 scopus 로고    scopus 로고
    • Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
    • Neil, H., Malabat, C., d'Aubenton-Carafa, Y., Xu, Z., Steinmetz, L.M. and Jacquier, A. (2009) Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature, 457, 1038-1042.
    • (2009) Nature , vol.457 , pp. 1038-1042
    • Neil, H.1    Malabat, C.2    D'Aubenton-Carafa, Y.3    Xu, Z.4    Steinmetz, L.M.5    Jacquier, A.6
  • 72
    • 77954716355 scopus 로고    scopus 로고
    • A paired-end sequencing strategy to map the complex landscape of transcription initiation
    • Ni, T., Corcoran, D.L., Rach, E.A., Song, S., Spana, E.P., Gao, Y., Ohler, U. and Zhu, J. (2010) A paired-end sequencing strategy to map the complex landscape of transcription initiation. Nat. Methods, 7, 521-527.
    • (2010) Nat. Methods , vol.7 , pp. 521-527
    • Ni, T.1    Corcoran, D.L.2    Rach, E.A.3    Song, S.4    Spana, E.P.5    Gao, Y.6    Ohler, U.7    Zhu, J.8
  • 74
    • 37349038984 scopus 로고    scopus 로고
    • Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome
    • Chekanova, J.A., Gregory, B.D., Reverdatto, S.V., Chen, H., Kumar, R., Hooker, T., Yazaki, J., Li, P., Skiba, N., Peng, Q. et al. (2007) Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell, 131, 1340-1353.
    • (2007) Cell , vol.131 , pp. 1340-1353
    • Chekanova, J.A.1    Gregory, B.D.2    Reverdatto, S.V.3    Chen, H.4    Kumar, R.5    Hooker, T.6    Yazaki, J.7    Li, P.8    Skiba, N.9    Peng, Q.10
  • 75
    • 78349252731 scopus 로고    scopus 로고
    • Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA
    • Yao, H., Brick, K., Evrard, Y., Xiao, T., Camerini-Otero, R.D. and Felsenfeld, G. (2010) Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA. Genes Dev., 24, 2543-2555.
    • (2010) Genes Dev. , vol.24 , pp. 2543-2555
    • Yao, H.1    Brick, K.2    Evrard, Y.3    Xiao, T.4    Camerini-Otero, R.D.5    Felsenfeld, G.6
  • 77
    • 38149052111 scopus 로고    scopus 로고
    • MicroRNAs in the Drosophila bithorax complex
    • Bender, W. (2008) MicroRNAs in the Drosophila bithorax complex. Genes Dev., 22, 14-19.
    • (2008) Genes Dev. , vol.22 , pp. 14-19
    • Bender, W.1
  • 78
    • 38149022486 scopus 로고    scopus 로고
    • Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci
    • Tyler, D.M., Okamura, K., Chung, W.J., Hagen, J.W., Berezikov, E., Hannon, G.J. and Lai, E.C. (2008) Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci. Genes Dev., 22, 26-36.
    • (2008) Genes Dev. , vol.22 , pp. 26-36
    • Tyler, D.M.1    Okamura, K.2    Chung, W.J.3    Hagen, J.W.4    Berezikov, E.5    Hannon, G.J.6    Lai, E.C.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.