메뉴 건너뛰기




Volumn 22, Issue 11, 2012, Pages 2199-2207

The BEAF-32 insulator coordinates genome organization and function during the evolution of Drosophila species

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PROTEIN; PROTEIN BEAF 32; UNCLASSIFIED DRUG;

EID: 84868314500     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.142125.112     Document Type: Article
Times cited : (42)

References (46)
  • 1
    • 0037188910 scopus 로고    scopus 로고
    • Bidirectional Gene Organization: A common architectural feature of the human genome
    • Adachi N, Lieber MR. 2002. Bidirectional Gene Organization: A common architectural feature of the human genome. Cell 109:807-809.
    • (2002) Cell , vol.109 , pp. 807-809
    • Adachi, N.1    Lieber, M.R.2
  • 2
    • 34547519199 scopus 로고    scopus 로고
    • Evolution of chromosome organization driven by selection for reduced gene expression noise
    • Batada NN, Hurst LD. 2007. Evolution of chromosome organization driven by selection for reduced gene expression noise. Nat Genet 39:945-949.
    • (2007) Nat Genet , vol.39 , pp. 945-949
    • Batada, N.N.1    Hurst, L.D.2
  • 4
    • 0035916357 scopus 로고    scopus 로고
    • An evolutionarily conserved function of the Drosophila insulin receptor and insulin-like peptides in growth control
    • Brogiolo W, Stocker H, Ikeya T, Rintelen F, Fernandez R, Hafen E. 2001. An evolutionarily conserved function of the Drosophila insulin receptor and insulin-like peptides in growth control. Curr Biol 11:213-221.
    • (2001) Curr Biol , vol.11 , pp. 213-221
    • Brogiolo, W.1    Stocker, H.2    Ikeya, T.3    Rintelen, F.4    Fernandez, R.5    Hafen, E.6
  • 5
    • 66149164708 scopus 로고    scopus 로고
    • Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions
    • Bushey AM, Ramos E, Corces VG. 2009. Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. Genes Dev 23:1338-1350.
    • (2009) Genes Dev , vol.23 , pp. 1338-1350
    • Bushey, A.M.1    Ramos, E.2    Corces, V.G.3
  • 6
    • 60549095599 scopus 로고    scopus 로고
    • Body size in Drosophila: Genetic architecture, allometries and sexual dimorphism
    • Carreira VP, Mensch J, Fanara JJ. 2008. Body size in Drosophila: Genetic architecture, allometries and sexual dimorphism. Heredity 102:246-256.
    • (2008) Heredity , vol.102 , pp. 246-256
    • Carreira, V.P.1    Mensch, J.2    Fanara, J.J.3
  • 7
    • 60149095014 scopus 로고    scopus 로고
    • Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
    • Cuddapah S, Jothi R, Schones DE, Roh T-Y, Cui K, Zhao K. 2009. Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res 19:24-32.
    • (2009) Genome Res , vol.19 , pp. 24-32
    • Cuddapah, S.1    Jothi, R.2    Schones, D.E.3    Roh, T.-Y.4    Cui, K.5    Zhao, K.6
  • 8
    • 56949086904 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of putative bidirectional promoters from rice, Arabidopsis and Populus
    • Dhadi SR, Krom N, Ramakrishna W. 2009. Genome-wide comparative analysis of putative bidirectional promoters from rice, Arabidopsis and Populus. Gene 429:65-73.
    • (2009) Gene , vol.429 , pp. 65-73
    • Dhadi, S.R.1    Krom, N.2    Ramakrishna, W.3
  • 9
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Drosophila12 Genomes Consortium
    • Drosophila12 Genomes Consortium. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450:203-218.
    • (2007) Nature , vol.450 , pp. 203-218
  • 11
    • 79955471381 scopus 로고    scopus 로고
    • High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species
    • He Q, Bardet AF, Patton B, Purvis J, Johnston J, Paulson A, Gogol M, Stark A, Zeitlinger J.2011. High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species. Nat Genet 43:414-420.
    • (2011) Nat Genet , vol.43 , pp. 414-420
    • He, Q.1    Bardet, A.F.2    Patton, B.3    Purvis, J.4    Johnston, J.5    Paulson, A.6    Gogol, M.7    Stark, A.8    Zeitlinger, J.9
  • 12
    • 4143058239 scopus 로고    scopus 로고
    • Close head-to-head juxtaposition of genes favors their coordinate regulation in Drosophila melanogaster
    • Herr DR, Harris GL. 2004. Close head-to-head juxtaposition of genes favors their coordinate regulation in Drosophila melanogaster. FEBS Lett 572:147-153.
    • (2004) FEBS Lett , vol.572 , pp. 147-153
    • Herr, D.R.1    Harris, G.L.2
  • 13
    • 0037494996 scopus 로고    scopus 로고
    • Sply regulation of sphingolipid signaling molecules is essential for Drosophila development
    • Herr DR, Fyrst H, Phan V, Heinecke K, Georges R, Harris GL, Saba JD. 2003. Sply regulation of sphingolipid signaling molecules is essential for Drosophila development. Development 130:2443-2453.
    • (2003) Development , vol.130 , pp. 2443-2453
    • Herr, D.R.1    Fyrst, H.2    Phan, V.3    Heinecke, K.4    Georges, R.5    Harris, G.L.6    Saba, J.D.7
  • 14
    • 1842529506 scopus 로고    scopus 로고
    • Characterization of the Drosophila sphingosine kinases and requirement for Sk2 in normal reproductive function
    • Herr DR, Fyrst H, Creason MB, Phan VH, Saba JD, Harris GL. 2004. Characterization of the Drosophila sphingosine kinases and requirement for Sk2 in normal reproductive function. J Biol Chem 279:12685-12694.
    • (2004) J Biol Chem , vol.279 , pp. 12685-12694
    • Herr, D.R.1    Fyrst, H.2    Creason, M.B.3    Phan, V.H.4    Saba, J.D.5    Harris, G.L.6
  • 15
    • 55549118625 scopus 로고    scopus 로고
    • ChromaSig: A probabilistic approach to finding common chromatin signatures in the human genome
    • doi:10.1371/journal.pcbi.1000201
    • Hon G, Ren B, Wang W. 2008. ChromaSig: A probabilistic approach to finding common chromatin signatures in the human genome. PLoS Comput Biol 4: e1000201. doi:10.1371/journal.pcbi.1000201.
    • (2008) PLoS Comput Biol , vol.4
    • Hon, G.1    Ren, B.2    Wang, W.3
  • 16
    • 1842427830 scopus 로고    scopus 로고
    • The evolutionary dynamics of eukaryotic gene order
    • Hurst LD, Pal C, Lercher MJ. 2004. The evolutionary dynamics of eukaryotic gene order. Nat Rev Genet 5:299-310.
    • (2004) Nat Rev Genet , vol.5 , pp. 299-310
    • Hurst, L.D.1    Pal, C.2    Lercher, M.J.3
  • 17
    • 67650093438 scopus 로고    scopus 로고
    • Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription
    • Jiang N, Emberly E, Cuvier O, Hart CM. 2009. Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription. Mol Cell Biol 29:3556-3568.
    • (2009) Mol Cell Biol , vol.29 , pp. 3556-3568
    • Jiang, N.1    Emberly, E.2    Cuvier, O.3    Hart, C.M.4
  • 21
    • 21744443068 scopus 로고    scopus 로고
    • Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system
    • Koyanagi KO, Hagiwara M, Itoh T, Gojobori T, Imanishi T. 2005. Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system. Gene 353:169-176.
    • (2005) Gene , vol.353 , pp. 169-176
    • Koyanagi, K.O.1    Hagiwara, M.2    Itoh, T.3    Gojobori, T.4    Imanishi, T.5
  • 22
    • 33746657720 scopus 로고    scopus 로고
    • Systematic analysis of head-to-head gene organization: Evolutionary conservation and potential biological relevance
    • doi:10.1371/journal.pcbi.0020074
    • Li Y-Y, Yu H, Guo Z-M, Guo T-Q, Tu K, Li Y-X. 2006. Systematic analysis of head-to-head gene organization: Evolutionary conservation and potential biological relevance. PLoS Comput Biol 2: e74. doi:10.1371/journal.pcbi.0020074.
    • (2006) PLoS Comput Biol , vol.2
    • Li, Y.-Y.1    Yu, H.2    Guo, Z.-M.3    Guo, T.-Q.4    Tu, K.5    Li, Y.-X.6
  • 30
    • 0037371689 scopus 로고    scopus 로고
    • Evidence for co-evolution of gene order and recombination rate
    • Pal C, Hurst LD. 2003. Evidence for co-evolution of gene order and recombination rate. Nat Genet 33:392-395.
    • (2003) Nat Genet , vol.33 , pp. 392-395
    • Pal, C.1    Hurst, L.D.2
  • 31
    • 3242884167 scopus 로고    scopus 로고
    • Weeder Web: Discovery of transcription factor binding sites in a set of sequences from co-regulated genes
    • Pavesi G, Mereghetti P, Mauri G, Pesole G. 2004. Weeder Web: Discovery of transcription factor binding sites in a set of sequences from co-regulated genes. Nucleic Acids Res 32: W199-W203.
    • (2004) Nucleic Acids Res , vol.32
    • Pavesi, G.1    Mereghetti, P.2    Mauri, G.3    Pesole, G.4
  • 32
    • 67549119096 scopus 로고    scopus 로고
    • CTCF Master weaver of the genome
    • Phillips JE, Corces VG. 2009. CTCF: Master weaver of the genome. Cell 137:1194-1211.
    • (2009) Cell , vol.137 , pp. 1194-1211
    • Phillips, J.E.1    Corces, V.G.2
  • 33
    • 0036951840 scopus 로고    scopus 로고
    • RETRACTED: Metabolism of sphingosine 1-phosphate and lysophosphatidic acid: A genome wide analysis of gene expression in Drosophila
    • Renault AD, Starz-Gaiano M, Lehmann R. 2002. RETRACTED: Metabolism of sphingosine 1-phosphate and lysophosphatidic acid: A genome wide analysis of gene expression in Drosophila. Gene Expr Patterns 2:337-345.
    • (2002) Gene Expr Patterns , vol.2 , pp. 337-345
    • Renault, A.D.1    Starz-Gaiano, M.2    Lehmann, R.3
  • 34
    • 79952541830 scopus 로고    scopus 로고
    • Sox14 is required for transcriptional and developmental responses to 20-hydroxyecdysone at the onset of Drosophila metamorphosis
    • Ritter AR, Beckstead RB. 2010. Sox14 is required for transcriptional and developmental responses to 20-hydroxyecdysone at the onset of Drosophila metamorphosis. Dev Dyn 239:2685-2694.
    • (2010) Dev Dyn , vol.239 , pp. 2685-2694
    • Ritter, A.R.1    Beckstead, R.B.2
  • 35
    • 34548855933 scopus 로고    scopus 로고
    • ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos
    • Sandmann T, Jakobsen JS, Furlong EEM. 2007. ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos. Nat Protoc 1:2839-2855.
    • (2007) Nat Protoc , vol.1 , pp. 2839-2855
    • Sandmann, T.1    Jakobsen, J.S.2    Furlong, E.E.M.3
  • 37
    • 76749120445 scopus 로고    scopus 로고
    • The phylogenetic distribution of non-CTCF insulator proteins is limited to insects and reveals that BEAF-32 is Drosophila lineage specific
    • Schoborg T, Labrador M. 2010. The phylogenetic distribution of non-CTCF insulator proteins is limited to insects and reveals that BEAF-32 is Drosophila lineage specific. J Mol Evol 70:74-84.
    • (2010) J Mol Evol , vol.70 , pp. 74-84
    • Schoborg, T.1    Labrador, M.2
  • 38
    • 79956009488 scopus 로고    scopus 로고
    • A BEAF dependent chromatin domain boundary separates myoglianin and eyeless genes of Drosophila melanogaster
    • Sultana H, Verma S, Mishra RK. 2011. A BEAF dependent chromatin domain boundary separates myoglianin and eyeless genes of Drosophila melanogaster. Nucleic Acids Res 39:3543-3557.
    • (2011) Nucleic Acids Res , vol.39 , pp. 3543-3557
    • Sultana, H.1    Verma, S.2    Mishra, R.K.3
  • 40
    • 79952698915 scopus 로고    scopus 로고
    • Support for multiple classes of local expression clusters in Drosophila melanogaster, but no evidence for gene order conservation
    • doi:10.1186/gb-2011-12-3-r23
    • Weber C, Hurst L. 2011. Support for multiple classes of local expression clusters in Drosophila melanogaster, but no evidence for gene order conservation. Genome Biol 12: R23. doi:10.1186/gb-2011-12-3-r23.
    • (2011) Genome Biol , vol.12
    • Weber, C.1    Hurst, L.2
  • 41
    • 34249848791 scopus 로고    scopus 로고
    • Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites
    • Xie X, Mikkelsen TS, Gnirke A, Lindblad-Toh K, Kellis M, Lander ES. 2007. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proc Natl Acad Sci 104:7145-7150.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 7145-7150
    • Xie, X.1    Mikkelsen, T.S.2    Gnirke, A.3    Lindblad-Toh, K.4    Kellis, M.5    Lander, E.S.6
  • 42
    • 79959448657 scopus 로고    scopus 로고
    • Chromatin insulators: A role in nuclear organization and gene expression
    • Yang J, Corces VG. 2011. Chromatin insulators: A role in nuclear organization and gene expression. Adv Cancer Res 110:43-76.
    • (2011) Adv Cancer Res , vol.110 , pp. 43-76
    • Yang, J.1    Corces, V.G.2
  • 43
    • 65249090200 scopus 로고    scopus 로고
    • A comparative analysis of divergently-paired genes (DPGs) among Drosophila and vertebrate genomes
    • doi:10.1186/1471-2148-9-55
    • Yang L, Yu J. 2009. A comparative analysis of divergently-paired genes (DPGs) among Drosophila and vertebrate genomes. BMC Evol Biol 9:55. doi:10.1186/1471-2148-9-55.
    • (2009) BMC Evol Biol , vol.9 , pp. 55
    • Yang, L.1    Yu, J.2
  • 44
    • 47249110379 scopus 로고    scopus 로고
    • Comparative analyses of bidirectional promoters in vertebrates
    • doi:10.1186/1471-2105-9-S6-S9
    • Yang M, Taylor J, Elnitski L. 2008. Comparative analyses of bidirectional promoters in vertebrates. BMC Bioinformatics 9: S9. doi:10.1186/1471-2105-9-S6- S9.
    • (2008) BMC Bioinformatics , vol.9
    • Yang, M.1    Taylor, J.2    Elnitski, L.3
  • 45
    • 80455122751 scopus 로고    scopus 로고
    • Gene bookmarking accelerates the kinetics of post-mitotic transcriptional re-activation
    • Zhao R, Nakamura T, Fu Y, Lazar Z, Spector DL. 2011. Gene bookmarking accelerates the kinetics of post-mitotic transcriptional re-activation. Nat Cell Biol 13:1295-1304.
    • (2011) Nat Cell Biol , vol.13 , pp. 1295-1304
    • Zhao, R.1    Nakamura, T.2    Fu, Y.3    Lazar, Z.4    Spector, D.L.5
  • 46
    • 70149112313 scopus 로고    scopus 로고
    • Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation
    • Zippo A, Serafini R, Rocchigiani M, Pennacchini S, Krepelova A, Oliviero S. 2009. Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation. Cell 138:1122-1136.
    • (2009) Cell , vol.138 , pp. 1122-1136
    • Zippo, A.1    Serafini, R.2    Rocchigiani, M.3    Pennacchini, S.4    Krepelova, A.5    Oliviero, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.