메뉴 건너뛰기




Volumn 10, Issue 12, 2014, Pages

Altered Chromatin Occupancy of Master Regulators Underlies Evolutionary Divergence in the Transcriptional Landscape of Erythroid Differentiation

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GATA 1; TRANSCRIPTION FACTOR KLF1; TRANSCRIPTION FACTOR NFE2; TRANSCRIPTION FACTOR TAL1; UNCLASSIFIED DRUG; CHROMATIN; HISTONE; PROTEIN BINDING;

EID: 84919608422     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004890     Document Type: Article
Times cited : (40)

References (78)
  • 1
    • 39349096526 scopus 로고    scopus 로고
    • Hematopoiesis: an evolving paradigm for stem cell biology
    • Orkin SH, Zon LI, (2008) Hematopoiesis: an evolving paradigm for stem cell biology. Cell 132: 631–644.
    • (2008) Cell , vol.132 , pp. 631-644
    • Orkin, S.H.1    Zon, L.I.2
  • 4
    • 84866600774 scopus 로고    scopus 로고
    • Cyclin D3 coordinates the cell cycle during differentiation to regulate erythrocyte size and number
    • Sankaran VG, Ludwig LS, Sicinska E, Xu J, Bauer DE, et al. (2012) Cyclin D3 coordinates the cell cycle during differentiation to regulate erythrocyte size and number. Genes & Development 26: 2075–2087.
    • (2012) Genes & Development , vol.26 , pp. 2075-2087
    • Sankaran, V.G.1    Ludwig, L.S.2    Sicinska, E.3    Xu, J.4    Bauer, D.E.5
  • 8
    • 69349092063 scopus 로고    scopus 로고
    • Developmental and species-divergent globin switching are driven by BCL11A
    • Sankaran VG, Xu J, Ragoczy T, Ippolito GC, Walkley CR, et al. (2009) Developmental and species-divergent globin switching are driven by BCL11A. Nature 460: 1093–U1050.
    • (2009) Nature , vol.460 , pp. 1093-U1050
    • Sankaran, V.G.1    Xu, J.2    Ragoczy, T.3    Ippolito, G.C.4    Walkley, C.R.5
  • 9
    • 8644275646 scopus 로고    scopus 로고
    • Differences in the chromatin structure and cis-element organization of the human and mouse GATA1 loci: implications for cis-element identification
    • Valverde-Garduno V, Guyot B, Anguita E, Hamlett I, Porcher C, et al. (2004) Differences in the chromatin structure and cis-element organization of the human and mouse GATA1 loci: implications for cis-element identification. Blood 104: 3106–3116.
    • (2004) Blood , vol.104 , pp. 3106-3116
    • Valverde-Garduno, V.1    Guyot, B.2    Anguita, E.3    Hamlett, I.4    Porcher, C.5
  • 11
    • 84901705651 scopus 로고    scopus 로고
    • Global transcriptome analyses of human and murine terminal erythroid differentiation
    • An X, Schulz VP, Li J, Wu K, Liu J, et al. (2014) Global transcriptome analyses of human and murine terminal erythroid differentiation. Blood 123: 3466–3477.
    • (2014) Blood , vol.123 , pp. 3466-3477
    • An, X.1    Schulz, V.P.2    Li, J.3    Wu, K.4    Liu, J.5
  • 12
    • 84879883635 scopus 로고    scopus 로고
    • Genome-wide association studies of hematologic phenotypes: a window into human hematopoiesis
    • Sankaran VG, Orkin SH, (2013) Genome-wide association studies of hematologic phenotypes: a window into human hematopoiesis. Current Opinion in Genetics & Development 23: 339–344.
    • (2013) Current Opinion in Genetics & Development , vol.23 , pp. 339-344
    • Sankaran, V.G.1    Orkin, S.H.2
  • 13
    • 84863957813 scopus 로고    scopus 로고
    • SEC23B is required for the maintenance of murine professional secretory tissues
    • Tao J, Zhu M, Wang H, Afelik S, Vasievich MP, et al. (2012) SEC23B is required for the maintenance of murine professional secretory tissues. Proc Natl Acad Sci U S A 109: E2001–2009.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 2001-2009
    • Tao, J.1    Zhu, M.2    Wang, H.3    Afelik, S.4    Vasievich, M.P.5
  • 14
    • 84906952155 scopus 로고    scopus 로고
    • Absence of a Red Blood Cell Phenotype in Mice with Hematopoietic Deficiency of SEC23B
    • Khoriaty R, Vasievich MP, Jones M, Everett L, Chase J, et al. (2014) Absence of a Red Blood Cell Phenotype in Mice with Hematopoietic Deficiency of SEC23B. Mol Cell Biol 34: 3721–3734.
    • (2014) Mol Cell Biol , vol.34 , pp. 3721-3734
    • Khoriaty, R.1    Vasievich, M.P.2    Jones, M.3    Everett, L.4    Chase, J.5
  • 15
    • 84892911243 scopus 로고    scopus 로고
    • Analysis of chromatin-state plasticity identifies cell-type-specific regulators of H3K27me3 patterns
    • Pinello L, Xu J, Orkin SH, Yuan GC, (2014) Analysis of chromatin-state plasticity identifies cell-type-specific regulators of H3K27me3 patterns. Proc Natl Acad Sci U S A 111: E344–353.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 344-353
    • Pinello, L.1    Xu, J.2    Orkin, S.H.3    Yuan, G.C.4
  • 16
    • 84895832107 scopus 로고    scopus 로고
    • Hughes JR, Roberts N, McGowan S, Hay D, Giannoulatou E, et al. (2014) Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment. Nature Genetics 46: 205−+.
  • 17
    • 84890129231 scopus 로고    scopus 로고
    • Dynamic analysis of gene expression and genome-wide transcription factor binding during lineage specification of multipotent progenitors
    • May G, Soneji S, Tipping AJ, Teles J, McGowan SJ, et al. (2013) Dynamic analysis of gene expression and genome-wide transcription factor binding during lineage specification of multipotent progenitors. Cell Stem Cell 13: 754–768.
    • (2013) Cell Stem Cell , vol.13 , pp. 754-768
    • May, G.1    Soneji, S.2    Tipping, A.J.3    Teles, J.4    McGowan, S.J.5
  • 18
    • 80053559720 scopus 로고    scopus 로고
    • Genome-wide ChIP-Seq reveals a dramatic shift in the binding of the transcription factor erythroid Kruppel-like factor during erythrocyte differentiation
    • Pilon AM, Ajay SS, Kumar SA, Steiner LA, Cherukuri PF, et al. (2011) Genome-wide ChIP-Seq reveals a dramatic shift in the binding of the transcription factor erythroid Kruppel-like factor during erythrocyte differentiation. Blood 118: e139–148.
    • (2011) Blood , vol.118 , pp. 139-148
    • Pilon, A.M.1    Ajay, S.S.2    Kumar, S.A.3    Steiner, L.A.4    Cherukuri, P.F.5
  • 19
    • 84875442750 scopus 로고    scopus 로고
    • Identification of biologically relevant enhancers in human erythroid cells
    • Su MY, Steiner LA, Bogardus H, Mishra T, Schulz VP, et al. (2013) Identification of biologically relevant enhancers in human erythroid cells. J Biol Chem 288: 8433–8444.
    • (2013) J Biol Chem , vol.288 , pp. 8433-8444
    • Su, M.Y.1    Steiner, L.A.2    Bogardus, H.3    Mishra, T.4    Schulz, V.P.5
  • 20
    • 84867736794 scopus 로고    scopus 로고
    • Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis
    • Xu J, Shao Z, Glass K, Bauer DE, Pinello L, et al. (2012) Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis. Dev Cell 23: 796–811.
    • (2012) Dev Cell , vol.23 , pp. 796-811
    • Xu, J.1    Shao, Z.2    Glass, K.3    Bauer, D.E.4    Pinello, L.5
  • 21
    • 84865273512 scopus 로고    scopus 로고
    • Tissue-specific mitotic bookmarking by hematopoietic transcription factor GATA1
    • Kadauke S, Udugama MI, Pawlicki JM, Achtman JC, Jain DP, et al. (2012) Tissue-specific mitotic bookmarking by hematopoietic transcription factor GATA1. Cell 150: 725–737.
    • (2012) Cell , vol.150 , pp. 725-737
    • Kadauke, S.1    Udugama, M.I.2    Pawlicki, J.M.3    Achtman, J.C.4    Jain, D.P.5
  • 22
    • 80053516108 scopus 로고    scopus 로고
    • Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
    • Wu W, Cheng Y, Keller CA, Ernst J, Kumar SA, et al. (2011) Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration. Genome Res 21: 1659–1671.
    • (2011) Genome Res , vol.21 , pp. 1659-1671
    • Wu, W.1    Cheng, Y.2    Keller, C.A.3    Ernst, J.4    Kumar, S.A.5
  • 23
    • 70449675049 scopus 로고    scopus 로고
    • Discovering Hematopoietic Mechanisms through Genome-wide Analysis of GATA Factor Chromatin Occupancy
    • Fujiwara T, O'Geen H, Keles S, Blahnik K, Linnemann AK, et al. (2009) Discovering Hematopoietic Mechanisms through Genome-wide Analysis of GATA Factor Chromatin Occupancy. Molecular Cell 36: 667–681.
    • (2009) Molecular Cell , vol.36 , pp. 667-681
    • Fujiwara, T.1    O'Geen, H.2    Keles, S.3    Blahnik, K.4    Linnemann, A.K.5
  • 24
    • 80054832679 scopus 로고    scopus 로고
    • Gene induction and repression during terminal erythropoiesis are mediated by distinct epigenetic changes
    • Wong P, Hattangadi SM, Cheng AW, Frampton GM, Young RA, et al. (2011) Gene induction and repression during terminal erythropoiesis are mediated by distinct epigenetic changes. Blood 118: e128–138.
    • (2011) Blood , vol.118 , pp. 128-138
    • Wong, P.1    Hattangadi, S.M.2    Cheng, A.W.3    Frampton, G.M.4    Young, R.A.5
  • 25
    • 80053501181 scopus 로고    scopus 로고
    • Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1
    • Hu GQ, Schones DE, Cui KR, Ybarra R, Northrup D, et al. (2011) Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1. Genome Research 21: 1650–1658.
    • (2011) Genome Research , vol.21 , pp. 1650-1658
    • Hu, G.Q.1    Schones, D.E.2    Cui, K.R.3    Ybarra, R.4    Northrup, D.5
  • 26
    • 70449696134 scopus 로고    scopus 로고
    • Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
    • Cheng Y, Wu W, Kumar SA, Yu D, Deng W, et al. (2009) Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression. Genome Res 19: 2172–2184.
    • (2009) Genome Res , vol.19 , pp. 2172-2184
    • Cheng, Y.1    Wu, W.2    Kumar, S.A.3    Yu, D.4    Deng, W.5
  • 27
    • 84894304557 scopus 로고    scopus 로고
    • Tight regulation of a timed nuclear import wave of EKLF by PKCtheta and FOE during Pro-E to Baso-E transition
    • Shyu YC, Lee TL, Chen X, Hsu PH, Wen SC, et al. (2014) Tight regulation of a timed nuclear import wave of EKLF by PKCtheta and FOE during Pro-E to Baso-E transition. Dev Cell 28: 409–422.
    • (2014) Dev Cell , vol.28 , pp. 409-422
    • Shyu, Y.C.1    Lee, T.L.2    Chen, X.3    Hsu, P.H.4    Wen, S.C.5
  • 28
    • 79953060951 scopus 로고    scopus 로고
    • Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, et al. (2011) Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 471: 480−+.
  • 29
    • 84861977900 scopus 로고    scopus 로고
    • Comparative epigenomic annotation of regulatory DNA
    • Xiao S, Xie D, Cao X, Yu P, Xing X, et al. (2012) Comparative epigenomic annotation of regulatory DNA. Cell 149: 1381–1392.
    • (2012) Cell , vol.149 , pp. 1381-1392
    • Xiao, S.1    Xie, D.2    Cao, X.3    Yu, P.4    Xing, X.5
  • 30
    • 84863604466 scopus 로고    scopus 로고
    • Evolutionary conservation of histone modifications in mammals
    • Woo YH, Li WH, (2012) Evolutionary conservation of histone modifications in mammals. Mol Biol Evol 29: 1757–1767.
    • (2012) Mol Biol Evol , vol.29 , pp. 1757-1767
    • Woo, Y.H.1    Li, W.H.2
  • 31
    • 44349131472 scopus 로고    scopus 로고
    • Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation
    • Kondo Y, Shen L, Cheng AS, Ahmed S, Boumber Y, et al. (2008) Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation. Nat Genet 40: 741–750.
    • (2008) Nat Genet , vol.40 , pp. 741-750
    • Kondo, Y.1    Shen, L.2    Cheng, A.S.3    Ahmed, S.4    Boumber, Y.5
  • 32
    • 84903640603 scopus 로고    scopus 로고
    • Arnold CD, Gerlach D, Spies D, Matts JA, Sytnikova YA, et al. (2014) Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution. Nat Genet.
  • 33
    • 34249818182 scopus 로고    scopus 로고
    • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    • Odom DT, Dowell RD, Jacobsen ES, Gordon W, Danford TW, et al. (2007) Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nature Genetics 39: 730–732.
    • (2007) Nature Genetics , vol.39 , pp. 730-732
    • Odom, D.T.1    Dowell, R.D.2    Jacobsen, E.S.3    Gordon, W.4    Danford, T.W.5
  • 34
    • 77957220857 scopus 로고    scopus 로고
    • Comparative epigenomic analysis of murine and human adipogenesis
    • Mikkelsen TS, Xu Z, Zhang X, Wang L, Gimble JM, et al. (2010) Comparative epigenomic analysis of murine and human adipogenesis. Cell 143: 156–169.
    • (2010) Cell , vol.143 , pp. 156-169
    • Mikkelsen, T.S.1    Xu, Z.2    Zhang, X.3    Wang, L.4    Gimble, J.M.5
  • 35
    • 84881141882 scopus 로고    scopus 로고
    • Cooperativity and rapid evolution of cobound transcription factors in closely related mammals
    • Stefflova K, Thybert D, Wilson MD, Streeter I, Aleksic J, et al. (2013) Cooperativity and rapid evolution of cobound transcription factors in closely related mammals. Cell 154: 530–540.
    • (2013) Cell , vol.154 , pp. 530-540
    • Stefflova, K.1    Thybert, D.2    Wilson, M.D.3    Streeter, I.4    Aleksic, J.5
  • 36
    • 77955155544 scopus 로고    scopus 로고
    • A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells
    • Tallack MR, Whitington T, Yuen WS, Wainwright EN, Keys JR, et al. (2010) A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells. Genome Res 20: 1052–1063.
    • (2010) Genome Res , vol.20 , pp. 1052-1063
    • Tallack, M.R.1    Whitington, T.2    Yuen, W.S.3    Wainwright, E.N.4    Keys, J.R.5
  • 37
    • 84891159436 scopus 로고    scopus 로고
    • Ldb1 complexes: the new master regulators of erythroid gene transcription
    • Love PE, Warzecha C, Li L, (2014) Ldb1 complexes: the new master regulators of erythroid gene transcription. Trends Genet 30: 1–9.
    • (2014) Trends Genet , vol.30 , pp. 1-9
    • Love, P.E.1    Warzecha, C.2    Li, L.3
  • 38
    • 84857707318 scopus 로고    scopus 로고
    • ChromHMM: automating chromatin-state discovery and characterization
    • Ernst J, Kellis M, (2012) ChromHMM: automating chromatin-state discovery and characterization. Nat Methods 9: 215–216.
    • (2012) Nat Methods , vol.9 , pp. 215-216
    • Ernst, J.1    Kellis, M.2
  • 39
    • 0037195069 scopus 로고    scopus 로고
    • Hematopoietic-specific activators establish an overlapping pattern of histone acetylation and methylation within a mammalian chromatin domain
    • Kiekhaefer CM, Grass JA, Johnson KD, Boyer ME, Bresnick EH, (2002) Hematopoietic-specific activators establish an overlapping pattern of histone acetylation and methylation within a mammalian chromatin domain. Proc Natl Acad Sci U S A 99: 14309–14314.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 14309-14314
    • Kiekhaefer, C.M.1    Grass, J.A.2    Johnson, K.D.3    Boyer, M.E.4    Bresnick, E.H.5
  • 40
    • 84855895602 scopus 로고    scopus 로고
    • Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells
    • Cheng C, Gerstein M, (2012) Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells. Nucleic Acids Res 40: 553–568.
    • (2012) Nucleic Acids Res , vol.40 , pp. 553-568
    • Cheng, C.1    Gerstein, M.2
  • 41
    • 57149090277 scopus 로고    scopus 로고
    • Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif
    • Cheng Y, King DC, Dore LC, Zhang XM, Zhou YP, et al. (2008) Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif. Genome Research 18: 1896–1905.
    • (2008) Genome Research , vol.18 , pp. 1896-1905
    • Cheng, Y.1    King, D.C.2    Dore, L.C.3    Zhang, X.M.4    Zhou, Y.P.5
  • 43
    • 84860323219 scopus 로고    scopus 로고
    • The hypersensitive sites of the murine beta-globin locus control region act independently to affect nuclear localization and transcriptional elongation
    • Bender MA, Ragoczy T, Lee J, Byron R, Telling A, et al. (2012) The hypersensitive sites of the murine beta-globin locus control region act independently to affect nuclear localization and transcriptional elongation. Blood 119: 3820–3827.
    • (2012) Blood , vol.119 , pp. 3820-3827
    • Bender, M.A.1    Ragoczy, T.2    Lee, J.3    Byron, R.4    Telling, A.5
  • 44
    • 84861964135 scopus 로고    scopus 로고
    • Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor
    • Deng W, Lee J, Wang H, Miller J, Reik A, et al. (2012) Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor. Cell 149: 1233–1244.
    • (2012) Cell , vol.149 , pp. 1233-1244
    • Deng, W.1    Lee, J.2    Wang, H.3    Miller, J.4    Reik, A.5
  • 45
    • 84885620722 scopus 로고    scopus 로고
    • An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level
    • Bauer DE, Kamran SC, Lessard S, Xu J, Fujiwara Y, et al. (2013) An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level. Science 342: 253–257.
    • (2013) Science , vol.342 , pp. 253-257
    • Bauer, D.E.1    Kamran, S.C.2    Lessard, S.3    Xu, J.4    Fujiwara, Y.5
  • 46
    • 57849083996 scopus 로고    scopus 로고
    • Human Fetal Hemoglobin Expression Is Regulated by the Developmental Stage-Specific Repressor BCL11A
    • Sankaran VG, Menne TF, Xu J, Akie TE, Lettre G, et al. (2008) Human Fetal Hemoglobin Expression Is Regulated by the Developmental Stage-Specific Repressor BCL11A. Science 322: 1839–1842.
    • (2008) Science , vol.322 , pp. 1839-1842
    • Sankaran, V.G.1    Menne, T.F.2    Xu, J.3    Akie, T.E.4    Lettre, G.5
  • 47
    • 84887001883 scopus 로고    scopus 로고
    • Characteristic phenotypes associated with congenital dyserythropoietic anemia (type II) manifest at different stages of erythropoiesis
    • Satchwell TJ, Pellegrin S, Bianchi P, Hawley BR, Gampel A, et al. (2013) Characteristic phenotypes associated with congenital dyserythropoietic anemia (type II) manifest at different stages of erythropoiesis. Haematologica 98: 1788–1796.
    • (2013) Haematologica , vol.98 , pp. 1788-1796
    • Satchwell, T.J.1    Pellegrin, S.2    Bianchi, P.3    Hawley, B.R.4    Gampel, A.5
  • 48
    • 84871223663 scopus 로고    scopus 로고
    • The murine growth differentiation factor 15 is not essential for systemic iron homeostasis in phlebotomized mice
    • Casanovas G, Vujic Spasic M, Casu C, Rivella S, Strelau J, et al. (2013) The murine growth differentiation factor 15 is not essential for systemic iron homeostasis in phlebotomized mice. Haematologica 98: 444–447.
    • (2013) Haematologica , vol.98 , pp. 444-447
    • Casanovas, G.1    Vujic Spasic, M.2    Casu, C.3    Rivella, S.4    Strelau, J.5
  • 49
    • 34948904750 scopus 로고    scopus 로고
    • High levels of GDF15 in thalassemia suppress expression of the iron regulatory protein hepcidin
    • Tanno T, Bhanu NV, Oneal PA, Goh SH, Staker P, et al. (2007) High levels of GDF15 in thalassemia suppress expression of the iron regulatory protein hepcidin. Nat Med 13: 1096–1101.
    • (2007) Nat Med , vol.13 , pp. 1096-1101
    • Tanno, T.1    Bhanu, N.V.2    Oneal, P.A.3    Goh, S.H.4    Staker, P.5
  • 50
    • 82955187600 scopus 로고    scopus 로고
    • Levels of growth differentiation factor-15 are high and correlate with clinical severity in transfusion-independent patients with beta thalassemia intermedia
    • Musallam KM, Taher AT, Duca L, Cesaretti C, Halawi R, et al. (2011) Levels of growth differentiation factor-15 are high and correlate with clinical severity in transfusion-independent patients with beta thalassemia intermedia. Blood Cells Mol Dis 47: 232–234.
    • (2011) Blood Cells Mol Dis , vol.47 , pp. 232-234
    • Musallam, K.M.1    Taher, A.T.2    Duca, L.3    Cesaretti, C.4    Halawi, R.5
  • 51
    • 77953062527 scopus 로고    scopus 로고
    • Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
    • Schmidt D, Wilson MD, Ballester B, Schwalie PC, Brown GD, et al. (2010) Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science 328: 1036–1040.
    • (2010) Science , vol.328 , pp. 1036-1040
    • Schmidt, D.1    Wilson, M.D.2    Ballester, B.3    Schwalie, P.C.4    Brown, G.D.5
  • 52
    • 79955471381 scopus 로고    scopus 로고
    • High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species
    • He Q, Bardet AF, Patton B, Purvis J, Johnston J, et al. (2011) High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species. Nat Genet 43: 414–420.
    • (2011) Nat Genet , vol.43 , pp. 414-420
    • He, Q.1    Bardet, A.F.2    Patton, B.3    Purvis, J.4    Johnston, J.5
  • 53
    • 84899453734 scopus 로고    scopus 로고
    • Evolution of transcription factor binding in metazoans - mechanisms and functional implications
    • Villar D, Flicek P, Odom DT, (2014) Evolution of transcription factor binding in metazoans - mechanisms and functional implications. Nat Rev Genet 15: 221–233.
    • (2014) Nat Rev Genet , vol.15 , pp. 221-233
    • Villar, D.1    Flicek, P.2    Odom, D.T.3
  • 55
    • 84878406576 scopus 로고    scopus 로고
    • Erythroid transcription factor EKLF/KLF1 mutation causing congenital dyserythropoietic anemia type IV in a patient of Taiwanese origin: review of all reported cases and development of a clinical diagnostic paradigm
    • Jaffray JA, Mitchell WB, Gnanapragasam MN, Seshan SV, Guo X, et al. (2013) Erythroid transcription factor EKLF/KLF1 mutation causing congenital dyserythropoietic anemia type IV in a patient of Taiwanese origin: review of all reported cases and development of a clinical diagnostic paradigm. Blood Cells Mol Dis 51: 71–75.
    • (2013) Blood Cells Mol Dis , vol.51 , pp. 71-75
    • Jaffray, J.A.1    Mitchell, W.B.2    Gnanapragasam, M.N.3    Seshan, S.V.4    Guo, X.5
  • 56
  • 57
    • 84903175117 scopus 로고    scopus 로고
    • Erythro-megakaryocytic transcription factors associated with hereditary anemia
    • Crispino JD, Weiss MJ, (2014) Erythro-megakaryocytic transcription factors associated with hereditary anemia. Blood 123: 3080–3088.
    • (2014) Blood , vol.123 , pp. 3080-3088
    • Crispino, J.D.1    Weiss, M.J.2
  • 58
    • 78249264453 scopus 로고    scopus 로고
    • A dominant mutation in the gene encoding the erythroid transcription factor KLF1 causes a congenital dyserythropoietic anemia
    • Arnaud L, Saison C, Helias V, Lucien N, Steschenko D, et al. (2010) A dominant mutation in the gene encoding the erythroid transcription factor KLF1 causes a congenital dyserythropoietic anemia. Am J Hum Genet 87: 721–727.
    • (2010) Am J Hum Genet , vol.87 , pp. 721-727
    • Arnaud, L.1    Saison, C.2    Helias, V.3    Lucien, N.4    Steschenko, D.5
  • 59
    • 0035103547 scopus 로고    scopus 로고
    • Uroporphyrinogen III synthase erythroid promoter mutations in adjacent GATA1 and CP2 elements cause congenital erythropoietic porphyria
    • Solis C, Aizencang GI, Astrin KH, Bishop DF, Desnick RJ, (2001) Uroporphyrinogen III synthase erythroid promoter mutations in adjacent GATA1 and CP2 elements cause congenital erythropoietic porphyria. J Clin Invest 107: 753–762.
    • (2001) J Clin Invest , vol.107 , pp. 753-762
    • Solis, C.1    Aizencang, G.I.2    Astrin, K.H.3    Bishop, D.F.4    Desnick, R.J.5
  • 60
    • 84899476119 scopus 로고    scopus 로고
    • Guidelines for investigating causality of sequence variants in human disease
    • MacArthur DG, Manolio TA, Dimmock DP, Rehm HL, Shendure J, et al. (2014) Guidelines for investigating causality of sequence variants in human disease. Nature 508: 469–476.
    • (2014) Nature , vol.508 , pp. 469-476
    • MacArthur, D.G.1    Manolio, T.A.2    Dimmock, D.P.3    Rehm, H.L.4    Shendure, J.5
  • 61
    • 84892507301 scopus 로고    scopus 로고
    • Applications of high-throughput DNA sequencing to benign hematology
    • Sankaran VG, Gallagher PG, (2013) Applications of high-throughput DNA sequencing to benign hematology. Blood 122: 3575–3582.
    • (2013) Blood , vol.122 , pp. 3575-3582
    • Sankaran, V.G.1    Gallagher, P.G.2
  • 62
    • 84887478181 scopus 로고    scopus 로고
    • Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins
    • Teytelman L, Thurtle DM, Rine J, van Oudenaarden A, (2013) Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins. Proc Natl Acad Sci U S A 110: 18602–18607.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 18602-18607
    • Teytelman, L.1    Thurtle, D.M.2    Rine, J.3    van Oudenaarden, A.4
  • 63
    • 84891945420 scopus 로고    scopus 로고
    • Widespread misinterpretable ChIP-seq bias in yeast
    • Park D, Lee Y, Bhupindersingh G, Iyer VR, (2013) Widespread misinterpretable ChIP-seq bias in yeast. PLoS One 8: e83506.
    • (2013) PLoS One , vol.8 , pp. 83506
    • Park, D.1    Lee, Y.2    Bhupindersingh, G.3    Iyer, V.R.4
  • 64
    • 84907263788 scopus 로고    scopus 로고
    • Comparative analysis of regulatory information and circuits across distant species
    • Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, et al. (2014) Comparative analysis of regulatory information and circuits across distant species. Nature 512: 453–456.
    • (2014) Nature , vol.512 , pp. 453-456
    • Boyle, A.P.1    Araya, C.L.2    Brdlik, C.3    Cayting, P.4    Cheng, C.5
  • 66
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10 , pp. 25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 67
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM, (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841–842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 68
    • 84899493057 scopus 로고    scopus 로고
    • ngs. plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
    • Shen L, Shao N, Liu X, Nestler E, (2014) ngs. plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases. BMC Genomics 15: 284.
    • (2014) BMC Genomics , vol.15 , pp. 284
    • Shen, L.1    Shao, N.2    Liu, X.3    Nestler, E.4
  • 70
    • 84919692480 scopus 로고    scopus 로고
    • Use model-based Analysis of ChIP-Seq (MACS) to analyze short reads generated by sequencing protein-DNA interactions in embryonic stem cells
    • Liu T, (2014) Use model-based Analysis of ChIP-Seq (MACS) to analyze short reads generated by sequencing protein-DNA interactions in embryonic stem cells. Methods Mol Biol 1150: 81–95.
    • (2014) Methods Mol Biol , vol.1150 , pp. 81-95
    • Liu, T.1
  • 71
    • 79958117256 scopus 로고    scopus 로고
    • MEME-ChIP: motif analysis of large DNA datasets
    • Machanick P, Bailey TL, (2011) MEME-ChIP: motif analysis of large DNA datasets. Bioinformatics 27: 1696–1697.
    • (2011) Bioinformatics , vol.27 , pp. 1696-1697
    • Machanick, P.1    Bailey, T.L.2
  • 72
    • 84880968176 scopus 로고    scopus 로고
    • GAT: a simulation framework for testing the association of genomic intervals
    • Heger A, Webber C, Goodson M, Ponting CP, Lunter G, (2013) GAT: a simulation framework for testing the association of genomic intervals. Bioinformatics 29: 2046–2048.
    • (2013) Bioinformatics , vol.29 , pp. 2046-2048
    • Heger, A.1    Webber, C.2    Goodson, M.3    Ponting, C.P.4    Lunter, G.5
  • 73
    • 79955583542 scopus 로고    scopus 로고
    • Mapping and analysis of chromatin state dynamics in nine human cell types
    • Ernst J, Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, et al. (2011) Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473: 43–49.
    • (2011) Nature , vol.473 , pp. 43-49
    • Ernst, J.1    Kheradpour, P.2    Mikkelsen, T.S.3    Shoresh, N.4    Ward, L.D.5
  • 74
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
    • Trapnell C, Roberts A, Goff L, Pertea G, Kim D, et al. (2012) Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 7: 562–578.
    • (2012) Nat Protoc , vol.7 , pp. 562-578
    • Trapnell, C.1    Roberts, A.2    Goff, L.3    Pertea, G.4    Kim, D.5
  • 75
    • 77950537175 scopus 로고    scopus 로고
    • Regularization Paths for Generalized Linear Models via Coordinate Descent
    • Friedman J, Hastie T, Tibshirani R, (2010) Regularization Paths for Generalized Linear Models via Coordinate Descent. J Stat Softw 33: 1–22.
    • (2010) J Stat Softw , vol.33 , pp. 1-22
    • Friedman, J.1    Hastie, T.2    Tibshirani, R.3
  • 76
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
    • Thorvaldsdottir H, Robinson JT, Mesirov JP, (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform 14: 178–192.
    • (2013) Brief Bioinform , vol.14 , pp. 178-192
    • Thorvaldsdottir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 77
    • 1542748076 scopus 로고    scopus 로고
    • Aligning multiple genomic sequences with the threaded blockset aligner
    • Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, et al. (2004) Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res 14: 708–715.
    • (2004) Genome Res , vol.14 , pp. 708-715
    • Blanchette, M.1    Kent, W.J.2    Riemer, C.3    Elnitski, L.4    Smit, A.F.5
  • 78
    • 23744458086 scopus 로고    scopus 로고
    • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
    • Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, et al. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 15: 1034–1050.
    • (2005) Genome Res , vol.15 , pp. 1034-1050
    • Siepel, A.1    Bejerano, G.2    Pedersen, J.S.3    Hinrichs, A.S.4    Hou, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.