메뉴 건너뛰기




Volumn 168, Issue 1, 2015, Pages 36-44

DNA extracted from saliva for methylation studies of psychiatric traits: Evidence tissue specificity and relatedness to brain

Author keywords

Biomarker; Epigenetic; EWAS; HumanMethylation450; Oragene

Indexed keywords

BRAIN DERIVED NEUROTROPHIC FACTOR; DNA; FKBP5 PROTEIN; NR3C1 PROTEIN; SEROTONIN TRANSPORTER; UNCLASSIFIED DRUG;

EID: 84919416287     PISSN: 15524841     EISSN: 1552485X     Source Type: Journal    
DOI: 10.1002/ajmg.b.32278     Document Type: Article
Times cited : (281)

References (65)
  • 4
    • 84860492186 scopus 로고    scopus 로고
    • CpGassoc: An R function for analysis of DNA methylation microarray data
    • Barfield RT, Kilaru V, Smith AK, Conneely KN. 2012. CpGassoc: An R function for analysis of DNA methylation microarray data. Bioinformatics 28(9):1280-1281.
    • (2012) Bioinformatics , vol.28 , Issue.9 , pp. 1280-1281
    • Barfield, R.T.1    Kilaru, V.2    Smith, A.K.3    Conneely, K.N.4
  • 7
    • 70450169678 scopus 로고    scopus 로고
    • Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns
    • Byun HM, Siegmund KD, Pan F, Weisenberger DJ, Kanel G, Laird PW, Yang AS. 2009. Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns. Hum Mol Genet 18(24):4808-4817.
    • (2009) Hum Mol Genet , vol.18 , Issue.24 , pp. 4808-4817
    • Byun, H.M.1    Siegmund, K.D.2    Pan, F.3    Weisenberger, D.J.4    Kanel, G.5    Laird, P.W.6    Yang, A.S.7
  • 10
    • 84929660165 scopus 로고    scopus 로고
    • Biomarker development for brain-based disorders: Recent progress in psychiatry
    • Ebot Enaw JO, Smith AK. 2013. Biomarker development for brain-based disorders: Recent progress in psychiatry. J Neurol Psychol 1(2):7.
    • (2013) J Neurol Psychol , vol.1 , Issue.2 , pp. 7
    • Ebot Enaw, J.O.1    Smith, A.K.2
  • 11
    • 84872942417 scopus 로고    scopus 로고
    • Epigenetic vestiges of early developmental adversity: Childhood stress exposure and DNA methylation in adolescence
    • Essex MJ, Boyce WT, Hertzman C, Lam LL, Armstrong JM, Neumann SM, Kobor MS. 2013. Epigenetic vestiges of early developmental adversity: Childhood stress exposure and DNA methylation in adolescence. Child Dev 84(1):58-75.
    • (2013) Child Dev , vol.84 , Issue.1 , pp. 58-75
    • Essex, M.J.1    Boyce, W.T.2    Hertzman, C.3    Lam, L.L.4    Armstrong, J.M.5    Neumann, S.M.6    Kobor, M.S.7
  • 13
    • 84905815711 scopus 로고    scopus 로고
    • Unravelling immune alterations in schizophrenia: Can DNA methylation provide clues
    • Frydecka D, Karpinski P, Misiak B. 2014. Unravelling immune alterations in schizophrenia: Can DNA methylation provide clues. Epigenomics 6(3):245-247.
    • (2014) Epigenomics , vol.6 , Issue.3 , pp. 245-247
    • Frydecka, D.1    Karpinski, P.2    Misiak, B.3
  • 17
    • 77957372037 scopus 로고    scopus 로고
    • Tissue specific DNA methylation of CpG islands in normal human adult somatic tissues distinguishes neural from non-neural tissues
    • Ghosh S, Yates AJ, Fruhwald MC, Miecznikowski JC, Plass C, Smiraglia D. 2010. Tissue specific DNA methylation of CpG islands in normal human adult somatic tissues distinguishes neural from non-neural tissues. Epigenetics 5(6):527-538.
    • (2010) Epigenetics , vol.5 , Issue.6 , pp. 527-538
    • Ghosh, S.1    Yates, A.J.2    Fruhwald, M.C.3    Miecznikowski, J.C.4    Plass, C.5    Smiraglia, D.6
  • 21
    • 84858681550 scopus 로고    scopus 로고
    • Commentary: The seven plagues of epigenetic epidemiology
    • Heijmans BT, Mill J. 2012. Commentary: The seven plagues of epigenetic epidemiology. Int J Epidemiol 41(1):74-78.
    • (2012) Int J Epidemiol , vol.41 , Issue.1 , pp. 74-78
    • Heijmans, B.T.1    Mill, J.2
  • 23
    • 84880867623 scopus 로고    scopus 로고
    • DNA methylation of the BDNF gene and its relevance to psychiatric disorders
    • Ikegame T, Bundo M, Murata Y, Kasai K, Kato T, Iwamoto K. 2013a. DNA methylation of the BDNF gene and its relevance to psychiatric disorders. J Hum Genet 58(7):434-438.
    • (2013) J Hum Genet , vol.58 , Issue.7 , pp. 434-438
    • Ikegame, T.1    Bundo, M.2    Murata, Y.3    Kasai, K.4    Kato, T.5    Iwamoto, K.6
  • 28
    • 66149123748 scopus 로고    scopus 로고
    • The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
    • Kriaucionis S, Heintz N. 2009. The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 324(5929):929-930.
    • (2009) Science , vol.324 , Issue.5929 , pp. 929-930
    • Kriaucionis, S.1    Heintz, N.2
  • 36
    • 84880924522 scopus 로고    scopus 로고
    • From promises to practical strategies in epigenetic epidemiology
    • Mill J, Heijmans BT. 2013. From promises to practical strategies in epigenetic epidemiology. Nat Rev Genet 14(8):585-594.
    • (2013) Nat Rev Genet , vol.14 , Issue.8 , pp. 585-594
    • Mill, J.1    Heijmans, B.T.2
  • 37
    • 84901752771 scopus 로고    scopus 로고
    • Validation of DNA methylation profiling in formalin-fixed paraffin-embedded samples using the Infinium HumanMethylation450 Microarray
    • Moran S, Vizoso M, Martinez-Cardus A, Gomez A, Matias-Guiu X, Chiavenna SM, Fernandez AG, Esteller M. 2014. Validation of DNA methylation profiling in formalin-fixed paraffin-embedded samples using the Infinium HumanMethylation450 Microarray. Epigenetics 9(6):829-833.
    • (2014) Epigenetics , vol.9 , Issue.6 , pp. 829-833
    • Moran, S.1    Vizoso, M.2    Martinez-Cardus, A.3    Gomez, A.4    Matias-Guiu, X.5    Chiavenna, S.M.6    Fernandez, A.G.7    Esteller, M.8
  • 39
    • 84907586693 scopus 로고    scopus 로고
    • Epigenetic Signaling in Psychiatric Disorders
    • Pena CJ, Bagot RC, Labonte B, Nestler EJ. 2014. Epigenetic Signaling in Psychiatric Disorders. J Mol Biol 426(20):3389-3412.
    • (2014) J Mol Biol , vol.426 , Issue.20 , pp. 3389-3412
    • Pena, C.J.1    Bagot, R.C.2    Labonte, B.3    Nestler, E.J.4
  • 40
    • 57149147611 scopus 로고    scopus 로고
    • Comparison of the genotyping results using DNA obtained from blood and saliva
    • Philibert RA, Zadorozhnyaya O, Beach SR, Brody GH. 2008. Comparison of the genotyping results using DNA obtained from blood and saliva. Psychiatr Genet 18(6):275-281.
    • (2008) Psychiatr Genet , vol.18 , Issue.6 , pp. 275-281
    • Philibert, R.A.1    Zadorozhnyaya, O.2    Beach, S.R.3    Brody, G.H.4
  • 41
    • 84876806540 scopus 로고    scopus 로고
    • A data-driven approach to preprocessing Illumina 450K methylation array data
    • CC Y.W.
    • Pidsley R, CC YW, Lunnon, Mill J, Schalkwyk LC. 2013. A data-driven approach to preprocessing Illumina 450K methylation array data. BMC Genomics 14:293.
    • (2013) BMC Genomics , vol.14 , pp. 293
    • Pidsley, R.1    Lunnon, M.J.2    Schalkwyk, L.C.3
  • 42
    • 79960556965 scopus 로고    scopus 로고
    • Epigenome-wide association studies for common human diseases
    • Rakyan VK, Down TA, Balding DJ, Beck S. 2011. Epigenome-wide association studies for common human diseases. Nat Rev Genet 12(8):529-541.
    • (2011) Nat Rev Genet , vol.12 , Issue.8 , pp. 529-541
    • Rakyan, V.K.1    Down, T.A.2    Balding, D.J.3    Beck, S.4
  • 44
    • 78149381194 scopus 로고    scopus 로고
    • Epigenetic epidemiology of common complex disease: Prospects for prediction, prevention, and treatment
    • Relton CL, Davey SG. 2010. Epigenetic epidemiology of common complex disease: Prospects for prediction, prevention, and treatment. PLoS Med 7(10):e1000356.
    • (2010) PLoS Med , vol.7 , Issue.10
    • Relton, C.L.1    Davey, S.G.2
  • 52
    • 33646010307 scopus 로고    scopus 로고
    • Evaluating the comparability of gene expression in blood and brain
    • Sullivan PF, Fan C, Perou CM. 2006. Evaluating the comparability of gene expression in blood and brain. Am J Med Genet B Neuropsychiatr Genet 141B(3):261-268.
    • (2006) Am J Med Genet B Neuropsychiatr Genet , vol.141 B , Issue.3 , pp. 261-268
    • Sullivan, P.F.1    Fan, C.2    Perou, C.M.3
  • 54
    • 84872564830 scopus 로고    scopus 로고
    • A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450k DNA methylation data
    • Teschendorff AE, Marabita F, Lechner M, Bartlett T, Tegner J, Gomez-Cabrero D, Beck S. 2013. A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450k DNA methylation data. Bioinformatics 29(2):189-196.
    • (2013) Bioinformatics , vol.29 , Issue.2 , pp. 189-196
    • Teschendorff, A.E.1    Marabita, F.2    Lechner, M.3    Bartlett, T.4    Tegner, J.5    Gomez-Cabrero, D.6    Beck, S.7
  • 55
    • 84879421488 scopus 로고    scopus 로고
    • Comparison of whole-genome DNA methylation patterns in whole blood, saliva, and lymphoblastoid cell lines
    • Thompson TM, Sharfi D, Lee M, Yrigollen CM, Naumova OY, Grigorenko EL. 2013. Comparison of whole-genome DNA methylation patterns in whole blood, saliva, and lymphoblastoid cell lines. Behav Genet 43(2):168-176.
    • (2013) Behav Genet , vol.43 , Issue.2 , pp. 168-176
    • Thompson, T.M.1    Sharfi, D.2    Lee, M.3    Yrigollen, C.M.4    Naumova, O.Y.5    Grigorenko, E.L.6
  • 56
    • 84885705541 scopus 로고    scopus 로고
    • On the outside, looking in: a review and evaluation of the comparability of blood and brain "-omes"
    • Tylee DS, Kawaguchi DM, Glatt SJ. 2013. On the outside, looking in: a review and evaluation of the comparability of blood and brain "-omes". Am J Med Genet B Neuropsychiatr Genet 162B(7):595-603.
    • (2013) Am J Med Genet B Neuropsychiatr Genet , vol.162 B , Issue.7 , pp. 595-603
    • Tylee, D.S.1    Kawaguchi, D.M.2    Glatt, S.J.3
  • 58
    • 79960310830 scopus 로고    scopus 로고
    • Epigenetic and inflammatory marker profiles associated with depression in a community-based epidemiologic sample
    • Uddin M, Koenen KC, Aiello AE, Wildman DE, de Los Santos R, Galea S. 2011. Epigenetic and inflammatory marker profiles associated with depression in a community-based epidemiologic sample. Psychol Med 41(5):997-1007.
    • (2011) Psychol Med , vol.41 , Issue.5 , pp. 997-1007
    • Uddin, M.1    Koenen, K.C.2    Aiello, A.E.3    Wildman, D.E.4    de Los Santos, R.5    Galea, S.6
  • 61
    • 3042747515 scopus 로고    scopus 로고
    • Early environmental regulation of hippocampal glucocorticoid receptor gene expression: Characterization of intracellular mediators and potential genomic target sites
    • Weaver IC, Diorio J, Seckl JR, Szyf M, Meaney MJ. 2004. Early environmental regulation of hippocampal glucocorticoid receptor gene expression: Characterization of intracellular mediators and potential genomic target sites. Ann N Y Acad Sci 1024:182-212.
    • (2004) Ann N Y Acad Sci , vol.1024 , pp. 182-212
    • Weaver, I.C.1    Diorio, J.2    Seckl, J.R.3    Szyf, M.4    Meaney, M.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.