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Volumn 42, Issue 16, 2014, Pages 10488-10502

Potential for genomic instability associated with retrotranspositionally-incompetent L1 loci

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; ENDONUCLEASE; ENRT PROTEIN; ENZ PROTEIN; ORF2 PROTEIN; RIBOSOMAL PROTEIN L1; UNCLASSIFIED DRUG; ORF2 PROTEIN, HUMAN; RNA DIRECTED DNA POLYMERASE; STOP CODON;

EID: 84917688276     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku687     Document Type: Article
Times cited : (40)

References (70)
  • 13
    • 84870482898 scopus 로고    scopus 로고
    • Extensive somatic L1 retrotransposition in colorectal tumors
    • Solyom, S., Ewing, A. D., Rahrmann, E. P., Doucet, T., Nelson, H. H., Burns, M. B., Harris, R. S., Sigmon, D. F., Casella, A., and Erlanger, B. et al. Solyom, S., Ewing, A. D., Rahrmann, E. P., Doucet, T., Nelson, H. H., Burns, M. B., Harris, R. S., Sigmon, D. F., Casella, A., and Erlanger, B. (2012) Extensive somatic L1 retrotransposition in colorectal tumors. Genome Res., 22, 2328-2338.
    • (2012) Genome Res. , vol.22 , pp. 2328-2338
    • Solyom, S.1    Ewing, A.D.2    Rahrmann, E.P.3    Doucet, T.4    Nelson, H.H.5    Burns, M.B.6    Harris, R.S.7    Sigmon, D.F.8    Casella, A.9    Erlanger, B.10
  • 14
    • 84865285978 scopus 로고    scopus 로고
    • Landscape of somatic retrotransposition in human cancers
    • Lee, E., Iskow, R., Yang, L., Gokcumen, O., Haseley, P., Luquette, L. J., Lohr, J. G., Harris, C. C., Ding, L., and Wilson, R. K. et al. Lee, E., Iskow, R., Yang, L., Gokcumen, O., Haseley, P., Luquette, L. J., Lohr, J. G., Harris, C. C., Ding, L., and Wilson, R. K. (2012) Landscape of somatic retrotransposition in human cancers. Science, 337, 967-971.
    • (2012) Science , vol.337 , pp. 967-971
    • Lee, E.1    Iskow, R.2    Yang, L.3    Gokcumen, O.4    Haseley, P.5    Luquette, L.J.6    Lohr, J.G.7    Harris, C.C.8    Ding, L.9    Wilson, R.K.10
  • 18
    • 15244361942 scopus 로고    scopus 로고
    • Chromosomal translocation mechanisms at intronic Alu elements in mammalian cells
    • Elliott, B., Richardson, C., and Jasin, M. Elliott, B., Richardson, C., and Jasin, M. (2005) Chromosomal translocation mechanisms at intronic Alu elements in mammalian cells. Mol. Cell, 17, 885-894.
    • (2005) Mol. Cell , vol.17 , pp. 885-894
    • Elliott, B.1    Richardson, C.2    Jasin, M.3    Elliott, B.4    Richardson, C.5    Jasin, M.6
  • 24
    • 0009969062 scopus 로고    scopus 로고
    • Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
    • Feng, Q., Moran, J. V., Kazazian, H. H., and Boeke, J. D. Feng, Q., Moran, J. V., Kazazian, H. H., and Boeke, J. D. (1996) Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell, 87, 905-916.
    • (1996) Cell , vol.87 , pp. 905-916
    • Feng, Q.1    Moran, J.V.2    Kazazian, H.H.3    Boeke, J.D.4    Feng, Q.5    Moran, J.V.6    Kazazian, H.H.7    Boeke, J.D.8
  • 28
    • 71249101060 scopus 로고    scopus 로고
    • Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer
    • Lin, C., Yang, L., Tanasa, B., Hutt, K., Ju, B. G., Ohgi, K., Zhang, J., Rose, D. W., Fu, X. D., and Glass, C. K. et al. Lin, C., Yang, L., Tanasa, B., Hutt, K., Ju, B. G., Ohgi, K., Zhang, J., Rose, D. W., Fu, X. D., and Glass, C. K. (2009) Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer. Cell, 139, 1069-1083.
    • (2009) Cell , vol.139 , pp. 1069-1083
    • Lin, C.1    Yang, L.2    Tanasa, B.3    Hutt, K.4    Ju, B.G.5    Ohgi, K.6    Zhang, J.7    Rose, D.W.8    Fu, X.D.9    Glass, C.K.10
  • 38
    • 0027248510 scopus 로고
    • Two additional potential retrotransposons isolated from a human L1 subfamily that contains an active retrotransposable element
    • Dombroski, B. A., Scott, A. F., and Kazazian, H. H. Dombroski, B. A., Scott, A. F., and Kazazian, H. H. (1993) Two additional potential retrotransposons isolated from a human L1 subfamily that contains an active retrotransposable element. Proc. Natl Acad. Sci. U. S. A., 90, 6513-6517.
    • (1993) Proc. Natl Acad. Sci. U. S. A. , vol.90 , pp. 6513-6517
    • Dombroski, B.A.1    Scott, A.F.2    Kazazian, H.H.3    Dombroski, B.A.4    Scott, A.F.5    Kazazian, H.H.6
  • 41
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-The BLAST-like alignment tool
    • Kent, W. J. Kent, W. J. (2002) BLAT-the BLAST-like alignment tool. Genome Res., 12, 656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1    Kent, W.J.2
  • 45
    • 2442671716 scopus 로고    scopus 로고
    • A highly active synthetic mammalian retrotransposon
    • Han, J. S. and Boeke, J. D. Han, J. S. and Boeke, J. D. (2004) A highly active synthetic mammalian retrotransposon. Nature, 429, 314-318.
    • (2004) Nature , vol.429 , pp. 314-318
    • Han, J.S.1    Boeke, J.D.2    Han, J.S.3    Boeke, J.D.4
  • 47
    • 67649845784 scopus 로고    scopus 로고
    • Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs
    • Kosugi, S., Hasebe, M., Tomita, M., and Yanagawa, H. Kosugi, S., Hasebe, M., Tomita, M., and Yanagawa, H. (2009) Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs. Proc. Natl Acad. Sci. U. S. A., 106, 10171-10176.
    • (2009) Proc. Natl Acad. Sci. U. S. A. , vol.106 , pp. 10171-10176
    • Kosugi, S.1    Hasebe, M.2    Tomita, M.3    Yanagawa, H.4    Kosugi, S.5    Hasebe, M.6    Tomita, M.7    Yanagawa, H.8
  • 52
    • 0023110577 scopus 로고
    • The LINE-1 DNA sequences in four mammalian orders predict proteins that conserve homologies to retrovirus proteins
    • Fanning, T. and Singer, M. Fanning, T. and Singer, M. (1987) The LINE-1 DNA sequences in four mammalian orders predict proteins that conserve homologies to retrovirus proteins. Nucleic Acids Res., 15, 2251-2260.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 2251-2260
    • Fanning, T.1    Singer, M.2    Fanning, T.3    Singer, M.4
  • 53
    • 0025006614 scopus 로고
    • Origin and evolution of retroelements based upon their reverse transcriptase sequences
    • Xiong, Y. and Eickbush, T. H. Xiong, Y. and Eickbush, T. H. (1990) Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J., 9, 3353-3362.
    • (1990) EMBO J. , vol.9 , pp. 3353-3362
    • Xiong, Y.1    Eickbush, T.H.2    Xiong, Y.3    Eickbush, T.H.4
  • 55
    • 0035869022 scopus 로고    scopus 로고
    • Kinetic analysis of translocation through nuclear pore complexes
    • Ribbeck, K. and Görlich, D. Ribbeck, K. and Görlich, D. (2001) Kinetic analysis of translocation through nuclear pore complexes. EMBO J., 20, 1320-1330.
    • (2001) EMBO J. , vol.20 , pp. 1320-1330
    • Ribbeck, K.1    Görlich, D.2    Ribbeck, K.3    Görlich, D.4
  • 56
    • 84875377539 scopus 로고    scopus 로고
    • Retroelements in human disease
    • Kaer, K. and Speek, M. Kaer, K. and Speek, M. (2013) Retroelements in human disease. Gene, 518, 231-241.
    • (2013) Gene , vol.518 , pp. 231-241
    • Kaer, K.1    Speek, M.2    Kaer, K.3    Speek, M.4
  • 57
    • 22844438250 scopus 로고    scopus 로고
    • A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease
    • Chen, J. M., Stenson, P. D., Cooper, D. N., and Férec, C. Chen, J. M., Stenson, P. D., Cooper, D. N., and Férec, C. (2005) A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease. Hum. Genet., 117, 411-427.
    • (2005) Hum. Genet. , vol.117 , pp. 411-427
    • Chen, J.M.1    Stenson, P.D.2    Cooper, D.N.3    Férec, C.4    Chen, J.M.5    Stenson, P.D.6    Cooper, D.N.7    Férec, C.8
  • 59
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., and FitzHugh, W. et al. Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., and FitzHugh, W. (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3    Nusbaum, C.4    Zody, M.C.5    Baldwin, J.6    Devon, K.7    Dewar, K.8    Doyle, M.9    Fitzhugh, W.10
  • 60
    • 33644854246 scopus 로고    scopus 로고
    • The dicistronic RNA from the mouse LINE-1 retrotransposon contains an internal ribosome entry site upstream of each ORF: Implications for retrotransposition
    • Li, P. W., Li, J., Timmerman, S. L., Krushel, L. A., and Martin, S. L. Li, P. W., Li, J., Timmerman, S. L., Krushel, L. A., and Martin, S. L. (2006) The dicistronic RNA from the mouse LINE-1 retrotransposon contains an internal ribosome entry site upstream of each ORF: implications for retrotransposition. Nucleic Acids Res., 34, 853-864.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 853-864
    • Li, P.W.1    Li, J.2    Timmerman, S.L.3    Krushel, L.A.4    Martin, S.L.5    Li, P.W.6    Li, J.7    Timmerman, S.L.8    Krushel, L.A.9    Martin, S.L.10
  • 64
    • 0031135862 scopus 로고    scopus 로고
    • LINEs and Alus-The polyA connection
    • Boeke, J. D. Boeke, J. D. (1997) LINEs and Alus-the polyA connection. Nat. Genet., 16, 6-7.
    • (1997) Nat. Genet. , vol.16 , pp. 6-7
    • Boeke, J.D.1    Boeke, J.D.2
  • 65
    • 84859224239 scopus 로고    scopus 로고
    • LINEs, SINEs and other retroelements: Do birds of a feather flock together
    • Roy-Engel, A. M. Roy-Engel, A. M. (2012) LINEs, SINEs and other retroelements: do birds of a feather flock together. Front. Biosci. (Landmark Ed), 17, 1345-1361.
    • (2012) Front. Biosci. (Landmark Ed) , vol.17 , pp. 1345-1361
    • Roy-Engel, A.M.1    Roy-Engelfeti, A.M.2
  • 67
    • 70349318211 scopus 로고    scopus 로고
    • The impact of retrotransposons on human genome evolution
    • Cordaux, R. and Batzer, M. A. Cordaux, R. and Batzer, M. A. (2009) The impact of retrotransposons on human genome evolution. Nat. Rev. Genet., 10, 691-703.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 691-703
    • Cordaux, R.1    Batzer, M.A.2    Cordaux, R.3    Batzer, M.A.4
  • 68
    • 84855199454 scopus 로고    scopus 로고
    • Alu elements: Know the SINEs
    • Deininger, P. Deininger, P. (2011) Alu elements: know the SINEs. Genome Biol., 12, 236.
    • (2011) Genome Biol. , vol.12 , pp. 236
    • Deininger, P.1    Deininger, P.2
  • 70
    • 2442667886 scopus 로고    scopus 로고
    • Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
    • Han, J. S., Szak, S. T., and Boeke, J. D. Han, J. S., Szak, S. T., and Boeke, J. D. (2004) Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature, 429, 268-274.
    • (2004) Nature , vol.429 , pp. 268-274
    • Han, J.S.1    Szak, S.T.2    Boeke, J.D.3    Han, J.S.4    Szak, S.T.5    Boeke, J.D.6


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