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Volumn 15, Issue 6, 2013, Pages 890-905

Alignment-free genetic sequence comparisons: A review of recent approaches by word analysis

Author keywords

Alignment free; Information theory; Sequence alignment; Word analysis

Indexed keywords

ALGORITHM; ANIMAL; BIOLOGY; COMPARATIVE STUDY; DNA SEQUENCE; INFORMATION SCIENCE; PHYLOGEOGRAPHY; PROCEDURES; SEQUENCE ALIGNMENT; STATISTICS AND NUMERICAL DATA;

EID: 84913590574     PISSN: 14675463     EISSN: 14774054     Source Type: Journal    
DOI: 10.1093/bib/bbt052     Document Type: Article
Times cited : (107)

References (73)
  • 3
    • 0017547820 scopus 로고
    • A fast string searching algorithm
    • Boyer RS, Moore SJ. A fast string searching algorithm. Commun ACM 1977;20:762-72.
    • (1977) Commun ACM , vol.20 , pp. 762-772
    • Boyer, R.S.1    Moore, S.J.2
  • 4
    • 84984028908 scopus 로고
    • Practical fast searching in strings
    • Horspool RN. Practical fast searching in strings. Softw Pract Exp 1980;10:501-6.
    • (1980) Softw Pract Exp , vol.10 , pp. 501-506
    • Horspool, R.N.1
  • 5
    • 0022663527 scopus 로고
    • The boyer moore galil string searching strategies revisited
    • Apostolico A, Giancarlo R. The boyer moore galil string searching strategies revisited. SiamJComput 1986;15:98-105.
    • (1986) SiamJComput , vol.15 , pp. 98-105
    • Apostolico, A.1    Giancarlo, R.2
  • 6
    • 0000386785 scopus 로고
    • Finding approximate patterns in strings
    • Ukkonen E. Finding approximate patterns in strings. JAlgor 1985;6:132-7.
    • (1985) JAlgor , vol.6 , pp. 132-137
    • Ukkonen, E.1
  • 7
    • 0345566149 scopus 로고    scopus 로고
    • A guided tour to approximate string matching
    • Navarro G. A guided tour to approximate string matching. JACMComp Surv 2001;33:31-88.
    • (2001) JACMComp Surv , vol.33 , pp. 31-88
    • Navarro, G.1
  • 9
    • 0032906117 scopus 로고    scopus 로고
    • The emerging paradigm and open problems in comparative genomics
    • Koonin E. The emerging paradigm and open problems in comparative genomics. Bioinformatics 1999;15:265-66.
    • (1999) Bioinformatics , vol.15 , pp. 265-266
    • Koonin, E.1
  • 10
    • 0032702456 scopus 로고    scopus 로고
    • Trends in computational biology: a summary based on a RECOMB plenary lecture
    • Wooley J. Trends in computational biology: a summary based on a RECOMB plenary lecture. JComput Biol 1999; 6:459-74.
    • (1999) JComput Biol , vol.6 , pp. 459-474
    • Wooley, J.1
  • 11
    • 77957272611 scopus 로고    scopus 로고
    • A survey of sequence alignment algorithms for next-generation sequencing
    • Li H, Homer N. A survey of sequence alignment algorithms for next-generation sequencing. Brief Bioinform 2010;11: 473-83.
    • (2010) Brief Bioinform , vol.11 , pp. 473-483
    • Li, H.1    Homer, N.2
  • 12
    • 10244253967 scopus 로고    scopus 로고
    • The unimarker (um) method for synteny mapping of large genomes
    • Liao B-Y, Chang Y-J, Ho J-M, et al. The unimarker (um) method for synteny mapping of large genomes. Bioinformatics 2004;20:3156-65.
    • (2004) Bioinformatics , vol.20 , pp. 3156-3165
    • Liao, B-Y.1    Chang, Y-J.2    Ho, J-M.3
  • 13
    • 84873432619 scopus 로고    scopus 로고
    • Alignment-free detection of horizontal gene transfer between closely related bacterial genomes
    • Domazet-Lošo M, Haubold B. Alignment-free detection of horizontal gene transfer between closely related bacterial genomes. Mob Genet Elements 2011;1:230-5.
    • (2011) Mob Genet Elements , vol.1 , pp. 230-235
    • Domazet-Lošo, M.1    Haubold, B.2
  • 14
    • 84860842759 scopus 로고    scopus 로고
    • Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation
    • Berkman PJ, Skarshewski A, Manoli S, et al. Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation. TheorAppl Genet 2012;124:423-32.
    • (2012) TheorAppl Genet , vol.124 , pp. 423-432
    • Berkman, P.J.1    Skarshewski, A.2    Manoli, S.3
  • 15
    • 0032518266 scopus 로고    scopus 로고
    • DNA shuffling of a family of genes from diverse species accelerates directed evolution
    • Crameri A, Raillard S-A, Bermudez E, et al. DNA shuffling of a family of genes from diverse species accelerates directed evolution. Nature 1998;391:288-91.
    • (1998) Nature , vol.391 , pp. 288-291
    • Crameri, A.1    Raillard, S-A.2    Bermudez, E.3
  • 17
    • 3042739661 scopus 로고    scopus 로고
    • What is dynamic programming?
    • Eddy SR. What is dynamic programming? Nat Biotechnol 2004;22:909-10.
    • (2004) Nat Biotechnol , vol.22 , pp. 909-910
    • Eddy, S.R.1
  • 18
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith T, Waterman M. Identification of common molecular subsequences. JMol Biol 1981;147:195-7.
    • (1981) JMol Biol , vol.147 , pp. 195-197
    • Smith, T.1    Waterman, M.2
  • 19
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman S, Wunsch C. A general method applicable to the search for similarities in the amino acid sequence of two proteins. JMol Biol 1970;48:443-53.
    • (1970) JMol Biol , vol.48 , pp. 443-453
    • Needleman, S.1    Wunsch, C.2
  • 21
    • 0030801002 scopus 로고    scopus 로고
    • Gapped blast and psi-blast: a new generation of protein database search programs
    • Altschul SF, Madden TL, Schäffer AA, et al. Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schäffer, A.A.3
  • 23
    • 0036226603 scopus 로고    scopus 로고
    • Blatthe blast-like alignment tool
    • Kent WJ. Blatthe blast-like alignment tool. Genome Res 2002;12:656-64.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 24
    • 77955868506 scopus 로고    scopus 로고
    • Computational solutions to large-scale data management and analysis
    • Schadt EE, Linderman MD, Sorenson J, et al. Computational solutions to large-scale data management and analysis. Nat Rev Genet 2010;11:647-57.
    • (2010) Nat Rev Genet , vol.11 , pp. 647-657
    • Schadt, E.E.1    Linderman, M.D.2    Sorenson, J.3
  • 25
    • 0042121237 scopus 로고    scopus 로고
    • Multiple sequence alignment with the clustal series of programs
    • Chenna R, Sugawara H, Koike T, et al. Multiple sequence alignment with the clustal series of programs. Nucleic Acids Res 2003;31:3497-500.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3497-3500
    • Chenna, R.1    Sugawara, H.2    Koike, T.3
  • 26
    • 77955019084 scopus 로고    scopus 로고
    • Parallelization of the mafft multiple sequence alignment program
    • Katoh K, Toh H. Parallelization of the mafft multiple sequence alignment program. Bioinformatics 2010;26: 1899-900.
    • (2010) Bioinformatics , vol.26 , pp. 1899-1900
    • Katoh, K.1    Toh, H.2
  • 27
    • 80054099001 scopus 로고    scopus 로고
    • Abundance of ultramicro inversions within local alignments between human and chimpanzee genomes
    • Hara Y, Imanishi T. Abundance of ultramicro inversions within local alignments between human and chimpanzee genomes. BMC Evol Biol 2011;11:308.
    • (2011) BMC Evol Biol , vol.11 , pp. 308
    • Hara, Y.1    Imanishi, T.2
  • 28
    • 0037342499 scopus 로고    scopus 로고
    • Alignment-free sequence comparison-a review
    • Vinga S, Almeida J. Alignment-free sequence comparison-a review. Bioinformatics 2003;19:513-23.
    • (2003) Bioinformatics , vol.19 , pp. 513-523
    • Vinga, S.1    Almeida, J.2
  • 29
    • 36248953301 scopus 로고    scopus 로고
    • Distance measures for biological sequences: some recent approaches
    • Mantaci S, Restivo A, Sciortino M. Distance measures for biological sequences: some recent approaches. Int J Approx Reason 2008;47:109-24.
    • (2008) Int J Approx Reason , vol.47 , pp. 109-124
    • Mantaci, S.1    Restivo, A.2    Sciortino, M.3
  • 30
    • 39549123618 scopus 로고    scopus 로고
    • A novel feature-based method for whole genome phylogenetic analysis without alignment: application to HEV genotyping and subtyping
    • Liu Z, Meng J, Sun X. A novel feature-based method for whole genome phylogenetic analysis without alignment: application to HEV genotyping and subtyping. Biochem Biophys Res Commun 2008;223:223-30.
    • (2008) Biochem Biophys Res Commun , vol.223 , pp. 223-230
    • Liu, Z.1    Meng, J.2    Sun, X.3
  • 31
    • 84901914434 scopus 로고    scopus 로고
    • Composition vector method based on maximum entropy principle for sequence comparison
    • Mar 3.
    • Chan RH, Chan TH, Yeung HM, et al. Composition vector method based on maximum entropy principle for sequence comparison. IEEE/ACM Trans Comput Biol Bioinform, 2011. Mar 3.
    • (2011) IEEE/ACM Trans Comput Biol Bioinform
    • Chan, R.H.1    Chan, T.H.2    Yeung, H.M.3
  • 32
    • 47249127227 scopus 로고    scopus 로고
    • An improved string composition method for sequence comparison
    • Lu G, Zhang S, Fang X. An improved string composition method for sequence comparison. BMC Bioinform 2008;9: S15.
    • (2008) BMC Bioinform , vol.9 , pp. S15
    • Lu, G.1    Zhang, S.2    Fang, X.3
  • 33
    • 34547630480 scopus 로고    scopus 로고
    • A simple statistical algorithm for biological sequence compression.
    • Cao MD, Dix TI, Allison L, et al. A simple statistical algorithm for biological sequence compression. In: Data CompressionConference, 2007. pp. 43-52.
    • (2007) Data CompressionConference , pp. 43-52
    • Cao, M.D.1    Dix, T.I.2    Allison, L.3
  • 34
    • 0242643741 scopus 로고    scopus 로고
    • A new sequence distance measure for phylogenetic tree construction
    • Out HH, Sayood K. A new sequence distance measure for phylogenetic tree construction. Bioinformatics 2003;19: 2111-30.
    • (2003) Bioinformatics , vol.19 , pp. 2111-2130
    • Out, H.H.1    Sayood, K.2
  • 35
    • 33646005790 scopus 로고    scopus 로고
    • The average common substring approach to phylogenomic reconstruction
    • Ulitsky I, Burstein D, Tuller T, et al. The average common substring approach to phylogenomic reconstruction. JComp Bio 2006;13:226-50.
    • (2006) JComp Bio , vol.13 , pp. 226-250
    • Ulitsky, I.1    Burstein, D.2    Tuller, T.3
  • 36
    • 79957873906 scopus 로고    scopus 로고
    • Alignment-free detection of local similarity among viral and bacterial genomes
    • Domazet-Lošo M, Haubold B. Alignment-free detection of local similarity among viral and bacterial genomes. Bioinformatics 2011;27:1466-72.
    • (2011) Bioinformatics , vol.27 , pp. 1466-1472
    • Domazet-Lošo, M.1    Haubold, B.2
  • 37
    • 84856043672 scopus 로고
    • The mathematical theory of communication
    • Shannon C. The mathematical theory of communication. Bell SystTechJ 1948;27:379-429.
    • (1948) Bell SystTechJ , vol.27 , pp. 379-429
    • Shannon, C.1
  • 38
    • 84861946771 scopus 로고    scopus 로고
    • Pattern clustering with statistical methods using a DNA-based algorithm
    • Kim I, Watada J, Pedrycz W, et al. Pattern clustering with statistical methods using a DNA-based algorithm. IEEE TransNanobioscience 2012;11:100-10.
    • (2012) IEEE TransNanobioscience , vol.11 , pp. 100-110
    • Kim, I.1    Watada, J.2    Pedrycz, W.3
  • 41
    • 27944434972 scopus 로고    scopus 로고
    • Optimal word sizes for dissimilarity measures and estimation of the degree of dissimilarity between DNA sequences
    • Wu T-J, Huang Y-H, Li L-A. Optimal word sizes for dissimilarity measures and estimation of the degree of dissimilarity between DNA sequences. Bioinformatics 2005; 21:4125-32.
    • (2005) Bioinformatics , vol.21 , pp. 4125-4132
    • Wu, T-J.1    Huang, Y-H.2    Li, L-A.3
  • 42
    • 80755176782 scopus 로고    scopus 로고
    • Integrating overlapping structures and background information of words significantly improves biological sequence comparison
    • Dai Q, Li L, Liu X, et al. Integrating overlapping structures and background information of words significantly improves biological sequence comparison. PLoS One 2011;6: e26779.
    • (2011) PLoS One , vol.6
    • Dai, Q.1    Li, L.2    Liu, X.3
  • 43
    • 77951213929 scopus 로고    scopus 로고
    • Fast comparison of DNA sequences by oligonucleotide profiling
    • Arnau V, Gallach M, Marín I. Fast comparison of DNA sequences by oligonucleotide profiling. BMC Res Notes 2008;1:5.
    • (2008) BMC Res Notes , vol.1 , pp. 5
    • Arnau, V.1    Gallach, M.2    Marín, I.3
  • 44
    • 62449130191 scopus 로고    scopus 로고
    • Alignment-free genome comparison with feature frequency profiles (ffp) and optimal resolutions
    • Sims GE, Jun SR, Kim SH. Alignment-free genome comparison with feature frequency profiles (ffp) and optimal resolutions. Proc Natl Acad Sci USA 2008;106:2677-82.
    • (2008) Proc Natl Acad Sci USA , vol.106 , pp. 2677-2682
    • Sims, G.E.1    Jun, S.R.2    Kim, S.H.3
  • 45
    • 0025952277 scopus 로고
    • Divergence measures based on the shannon entropy
    • Lin J. Divergence measures based on the shannon entropy. IEEETrans InfTheory 1991;37:145-51.
    • (1991) IEEETrans InfTheory , vol.37 , pp. 145-151
    • Lin, J.1
  • 46
    • 49749129961 scopus 로고    scopus 로고
    • Confirming the phylogeny of mammals by use of large comparative sequence data sets
    • Prasad AB, Allard MW, Green ED. Confirming the phylogeny of mammals by use of large comparative sequence data sets. Mol Biol Evol 2008;25:1795-808.
    • (2008) Mol Biol Evol , vol.25 , pp. 1795-1808
    • Prasad, A.B.1    Allard, M.W.2    Green, E.D.3
  • 47
    • 84867762948 scopus 로고    scopus 로고
    • Sequence comparison alignment- free approach based on suffix tree and l-words frequency
    • Soares I, Goios A, Amorim A. Sequence comparison alignment- free approach based on suffix tree and l-words frequency. SciWorldJ 2012;2012:450124.
    • (2012) SciWorldJ , vol.2012 , pp. 450124
    • Soares, I.1    Goios, A.2    Amorim, A.3
  • 48
    • 80054865121 scopus 로고    scopus 로고
    • Prokaryotic phylogeny based on complete genomes without sequence alignment
    • Hao B, Qi J, Wang B. Prokaryotic phylogeny based on complete genomes without sequence alignment. Mod Phys Lett B 2003;2:1-4.
    • (2003) Mod Phys Lett B , vol.2 , pp. 1-4
    • Hao, B.1    Qi, J.2    Wang, B.3
  • 49
    • 1242335920 scopus 로고    scopus 로고
    • Whole proteome prokaryote phylogeny without sequence alignment: a k-string composition approach
    • Qi J, Wang B, Hao B-I. Whole proteome prokaryote phylogeny without sequence alignment: a k-string composition approach. JMol Evol 2004;58:1-11.
    • (2004) JMol Evol , vol.58 , pp. 1-11
    • Qi, J.1    Wang, B.2    Hao, B-I.3
  • 50
    • 33748796945 scopus 로고    scopus 로고
    • Phylogenetic analysis using complete signature information of whole genomes and clustered neighbour-joining method
    • Wu X, Wan X, Wu G, et al. Phylogenetic analysis using complete signature information of whole genomes and clustered neighbour-joining method. Int J Bioinform Res Appl, 2006;2:219-48.
    • (2006) Int J Bioinform Res Appl , vol.2 , pp. 219-248
    • Wu, X.1    Wan, X.2    Wu, G.3
  • 51
    • 0022757813 scopus 로고
    • Linguistics of nucleotide sequences: morphology and comparison of vocabularies
    • Brendel V, Beckmann JS, Trifonov EN. Linguistics of nucleotide sequences: morphology and comparison of vocabularies. J Biomol StructDyn 1986;4:11-21.
    • (1986) J Biomol StructDyn , vol.4 , pp. 11-21
    • Brendel, V.1    Beckmann, J.S.2    Trifonov, E.N.3
  • 52
    • 3242889314 scopus 로고    scopus 로고
    • Prokaryote phylogeny without sequence alignment: from avoidance signature to composition distance
    • Hao B, Qi J. Prokaryote phylogeny without sequence alignment: from avoidance signature to composition distance. J Bioinform Comput Biol 2004;2:1-19.
    • (2004) J Bioinform Comput Biol , vol.2 , pp. 1-19
    • Hao, B.1    Qi, J.2
  • 53
    • 0024565780 scopus 로고
    • The distribution of the frequency of occurrence of nucleotide subsequences, based on their overlap capability
    • Gentleman J, Mullin R. The distribution of the frequency of occurrence of nucleotide subsequences, based on their overlap capability. Biometrics 1989;45:35-52.
    • (1989) Biometrics , vol.45 , pp. 35-52
    • Gentleman, J.1    Mullin, R.2
  • 54
    • 0035253064 scopus 로고    scopus 로고
    • Statistically significant strings are related to regulatory elements in the promoter regions of saccharomyces cerevisiae
    • Hua R, Wanga B. Statistically significant strings are related to regulatory elements in the promoter regions of saccharomyces cerevisiae. Physica A 2001;290:464-74.
    • (2001) Physica A , vol.290 , pp. 464-474
    • Hua, R.1    Wanga, B.2
  • 55
    • 19944366976 scopus 로고    scopus 로고
    • Phylogeny of prokaryotes and chloroplasts revealed by a simple composition approach on all protein sequences from complete genomes without sequence alignment
    • Yu Z-G, Zhou L-Q, Anh VV, et al. Phylogeny of prokaryotes and chloroplasts revealed by a simple composition approach on all protein sequences from complete genomes without sequence alignment. J Mol Evol 2005;60: 538-45.
    • (2005) J Mol Evol , vol.60 , pp. 538-545
    • Yu, Z-G.1    Zhou, L-Q.2    Anh, V.V.3
  • 56
    • 72049114999 scopus 로고    scopus 로고
    • Characterizing the d2 statistic: word matches in biological sequences
    • Forêt S, Wilson SR, Burden CJ. Characterizing the d2 statistic: word matches in biological sequences. Stat Appl Genet Mol Biol 2009;8:1-21.
    • (2009) Stat Appl Genet Mol Biol , vol.8 , pp. 1-21
    • Forêt, S.1    Wilson, S.R.2    Burden, C.J.3
  • 58
    • 34247563994 scopus 로고    scopus 로고
    • Asymptotic behavior of k-word matches between two uniformly distributed sequences
    • Forêt S, Kantorovitz M, Burden CJ. Asymptotic behavior of k-word matches between two uniformly distributed sequences. BMC Bioinform 2006;7:S21.
    • (2006) BMC Bioinform , vol.7 , pp. S21
    • Forêt, S.1    Kantorovitz, M.2    Burden, C.J.3
  • 59
    • 0037195172 scopus 로고    scopus 로고
    • Distributional regimes for the number of k-word matches between two random sequences
    • Lippert R, Huang H, Waterman M. Distributional regimes for the number of k-word matches between two random sequences. Proc Natl Acad Sci USA 2002;99:13980-9.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 13980-13989
    • Lippert, R.1    Huang, H.2    Waterman, M.3
  • 60
    • 75149164526 scopus 로고    scopus 로고
    • Alignment-free sequence comparison (i): Statistics and power
    • Reinert G, Chew D, Sun F, et al. Alignment-free sequence comparison (i): Statistics and power. JComput Biol 2009;16: 1615-34.
    • (2009) JComput Biol , vol.16 , pp. 1615-1634
    • Reinert, G.1    Chew, D.2    Sun, F.3
  • 61
    • 34547844142 scopus 로고    scopus 로고
    • A statistical method for alignment-free comparison of regulatory sequences
    • Kantorovitz MR, Robinson GE, Sinha S. A statistical method for alignment-free comparison of regulatory sequences. Bioinformatics 2007;23:i249-55.
    • (2007) Bioinformatics , vol.23 , pp. i249-i255
    • Kantorovitz, M.R.1    Robinson, G.E.2    Sinha, S.3
  • 62
    • 78349292948 scopus 로고    scopus 로고
    • Alignment-free sequence comparison (ii): theoretical power of comparison statistics
    • Wan L, Reinert G, Sun F, et al. Alignment-free sequence comparison (ii): theoretical power of comparison statistics. JComputBiol 2010;17:1467-90.
    • (2010) JComputBiol , vol.17 , pp. 1467-1490
    • Wan, L.1    Reinert, G.2    Sun, F.3
  • 63
    • 84860824987 scopus 로고    scopus 로고
    • Alignment-free sequence comparison based on next generation sequencing reads
    • Springer
    • Song K, Ren J, Zhai Z, et al. Alignment-free sequence comparison based on next generation sequencing reads. In: Research in Computational Molecular Biology. Springer, 2012. pp. 272-85.
    • (2012) Research in Computational Molecular Biology. , pp. 272-285
    • Song, K.1    Ren, J.2    Zhai, Z.3
  • 64
    • 79959929795 scopus 로고    scopus 로고
    • New powerful statistics for alignment- free sequence comparison under a pattern transfer model
    • Liu X, Wan L, Li J, et al. New powerful statistics for alignment- free sequence comparison under a pattern transfer model. JTheor Biol 2011;284:106-16.
    • (2011) JTheor Biol , vol.284 , pp. 106-116
    • Liu, X.1    Wan, L.2    Li, J.3
  • 65
    • 0017493286 scopus 로고
    • A universal algorithm for sequential data compression
    • Ziv J, Lempel A. A universal algorithm for sequential data compression. IEEETrans InfTheory 1977;23:337-43.
    • (1977) IEEETrans InfTheory , vol.23 , pp. 337-343
    • Ziv, J.1    Lempel, A.2
  • 66
    • 84867285232 scopus 로고    scopus 로고
    • Deliminate-a fast and efficient method for loss-less compression of genomic sequences
    • Mohammed MH, Dutta A, Bose T, et al. Deliminate-a fast and efficient method for loss-less compression of genomic sequences. Bioinformatics 2012;28:2527-9.
    • (2012) Bioinformatics , vol.28 , pp. 2527-2529
    • Mohammed, M.H.1    Dutta, A.2    Bose, T.3
  • 67
    • 84861760100 scopus 로고    scopus 로고
    • Large-scale compression of genomic sequence databases with the burrows-wheeler transform
    • Cox AJ, Bauer MJ, Jakobi T, et al. Large-scale compression of genomic sequence databases with the burrows-wheeler transform. Bioinformatics 2012;28:1415-9.
    • (2012) Bioinformatics , vol.28 , pp. 1415-1419
    • Cox, A.J.1    Bauer, M.J.2    Jakobi, T.3
  • 68
    • 79952410480 scopus 로고    scopus 로고
    • Compressing genomic sequence fragments using slimgene
    • Kozanitis C, Saunders C, Kruglyak S, et al. Compressing genomic sequence fragments using slimgene. J Comput Biol 2011;18:401-13.
    • (2011) J Comput Biol , vol.18 , pp. 401-413
    • Kozanitis, C.1    Saunders, C.2    Kruglyak, S.3
  • 70
    • 84913597792 scopus 로고    scopus 로고
    • A meta-genome sequencing and assembly preprocessing algorithm inspired by restriction site base composition
    • Bonham-Carter O, Ali H, Bastola DK. A meta-genome sequencing and assembly preprocessing algorithm inspired by restriction site base composition. BMC Bioinformatics 2013.
    • (2013) BMC Bioinformatics
    • Bonham-Carter, O.1    Ali, H.2    Bastola, D.K.3
  • 72
    • 84870200615 scopus 로고    scopus 로고
    • Evolutionary implications of horizontal gene transfer
    • Syvanen M. Evolutionary implications of horizontal gene transfer. AnnuRev Genet 2012;46:341-58.
    • (2012) AnnuRev Genet , vol.46 , pp. 341-358
    • Syvanen, M.1
  • 73
    • 84864366710 scopus 로고    scopus 로고
    • Parallel evolution and horizontal gene transfer of the pst operon in firmicutes from oligotrophic environments
    • Moreno-Letelier A, Olmedo G, Eguiarte LE, et al. "Parallel evolution and horizontal gene transfer of the pst operon in firmicutes from oligotrophic environments. Int J Evol Biol. vol. 2011;2011.
    • (2011) Int J Evol Biol. , vol.2011
    • Moreno-Letelier, A.1    Olmedo, G.2    Eguiarte, L.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.