DELIMINATE-a fast and efficient method for loss-less compression of genomic sequences

Bioinformatics

Volumn 28, Issue 19, 2012, Pages 2527-2529

  Mohammed, Monzoorul Haque ^a   Dutta, Anirban ^a   Bose, Tungadri ^a   Chadaram, Sudha ^a   Mande, Sharmila S ^a  

^a TATA CONSULTANCY SERVICES   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGY; DNA SEQUENCE; GENOMICS; INFORMATION PROCESSING; METHODOLOGY; NUCLEOTIDE SEQUENCE;

ALGORITHMS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; DATA COMPRESSION; GENOMICS; SEQUENCE ANALYSIS, DNA;

EID: 84867285232     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts467     Document Type: Article

References (5)

1. Cao, M.D. et al. (2007) A simple statistical algorithm for biological sequence compression. In: Proceedings of the IEEE Data Compression Conference (DCC), IEEE Computer Society, Los Alamitos, CA, USA, pp. 43-52.
2. Chen et al. (1999) A compression algorithm for DNA sequences and its applications in genome comparison. Genome Informatics Workshop on Genome Informatics, 10, 51-61.
3. Deorowicz, S. and Grabowski, S (2011) Robust relative compression of genomes with random access. Bioinformatics, 27, 2979-2986.
4. Giancarlo, R. et al. (2009) Textual data compression in computational biology: a synopsis. Bioinformatics, 25, 1575-1586.
5. Kuruppu, S. et al. (2011) Reference sequence construction for relative compression of genomes. In Grossi, R. et al. (ed.) String Processing and Information Retrieval. Springer Berlin Heidelberg, Berlin, Heidelberg, pp. 420-425.